Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08905

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,009,679	-		DDA3937_RS22775	0.31	+0.0
2,009,679	-		DDA3937_RS22775	0.31	-0.2
2,009,740	-		DDA3937_RS22775	0.36	-1.9
2,009,757	+		DDA3937_RS22775	0.38	-0.7
2,009,757	+		DDA3937_RS22775	0.38	+0.3
2,009,757	+		DDA3937_RS22775	0.38	-0.9
2,009,758	-		DDA3937_RS22775	0.38	-0.1
2,009,758	-				-0.4
2,009,758	-		DDA3937_RS22775	0.38	+1.9
2,009,758	-		DDA3937_RS22775	0.38	-0.4
2,009,758	-		DDA3937_RS22775	0.38	-1.7
2,009,847	-		DDA3937_RS22775	0.45	+0.3
2,009,847	-		DDA3937_RS22775	0.45	+0.9
2,009,873	-		DDA3937_RS22775	0.48	-0.0
2,009,900	+		DDA3937_RS22775	0.50	+1.9
2,009,900	+		DDA3937_RS22775	0.50	+0.9
2,009,900	+		DDA3937_RS22775	0.50	-0.9
2,009,901	-		DDA3937_RS22775	0.50	-0.1
2,009,901	-		DDA3937_RS22775	0.50	+3.4
2,009,901	-		DDA3937_RS22775	0.50	-2.3
2,009,901	-		DDA3937_RS22775	0.50	+1.6
2,009,901	-		DDA3937_RS22775	0.50	-0.7
2,009,901	-		DDA3937_RS22775	0.50	+0.6
2,009,964	+		DDA3937_RS22775	0.55	-0.4
2,009,964	+		DDA3937_RS22775	0.55	-0.9
2,009,965	-		DDA3937_RS22775	0.55	+0.2
2,009,965	-		DDA3937_RS22775	0.55	-0.4
2,009,965	-		DDA3937_RS22775	0.55	-0.7
2,009,968	+		DDA3937_RS22775	0.56	-2.1
2,009,968	+		DDA3937_RS22775	0.56	-1.1
2,009,968	+		DDA3937_RS22775	0.56	+1.1
2,009,968	+		DDA3937_RS22775	0.56	-0.0
2,009,968	+		DDA3937_RS22775	0.56	-0.6
2,009,968	+		DDA3937_RS22775	0.56	-0.8
2,009,968	+		DDA3937_RS22775	0.56	+0.9
2,009,969	-		DDA3937_RS22775	0.56	-2.5
2,009,969	-		DDA3937_RS22775	0.56	+0.9
2,009,969	-				-0.1
2,009,969	-				+0.3
2,009,969	-		DDA3937_RS22775	0.56	+1.2
2,009,969	-		DDA3937_RS22775	0.56	-2.0
2,009,969	-		DDA3937_RS22775	0.56	-0.9
2,009,969	-		DDA3937_RS22775	0.56	-1.6
2,010,227	+		DDA3937_RS22775	0.78	+1.0
2,010,339	+		DDA3937_RS22775	0.87	-2.8
2,010,340	-		DDA3937_RS22775	0.87	-1.6
2,010,340	-		DDA3937_RS22775	0.87	-0.7
2,010,342	-		DDA3937_RS22775	0.87	+0.5
2,010,342	-		DDA3937_RS22775	0.87	+1.3
2,010,413	-				-0.6
2,010,478	+				+1.5
2,010,478	+				+0.2
2,010,478	+				-1.9
2,010,479	-				-1.6
2,010,499	+				-2.6
2,010,499	+				+0.6
2,010,500	-				-0.4
2,010,500	-				-2.0
2,010,578	+				+0.3
2,010,579	-				-0.8
2,010,636	+		DDA3937_RS08905	0.11	+0.5
2,010,636	+		DDA3937_RS08905	0.11	-1.3
2,010,637	-		DDA3937_RS08905	0.11	-3.5
2,010,637	-		DDA3937_RS08905	0.11	-1.8
2,010,637	-		DDA3937_RS08905	0.11	+0.5
2,010,637	-		DDA3937_RS08905	0.11	-2.1
2,010,637	-		DDA3937_RS08905	0.11	+0.3
2,010,637	-		DDA3937_RS08905	0.11	+2.5
2,010,637	-		DDA3937_RS08905	0.11	-0.1
2,010,639	+		DDA3937_RS08905	0.11	-0.1
2,010,737	-		DDA3937_RS08905	0.18	+1.1
2,010,847	+		DDA3937_RS08905	0.25	+0.9
2,010,847	+		DDA3937_RS08905	0.25	-0.9
2,010,847	+		DDA3937_RS08905	0.25	-1.1
2,010,848	-		DDA3937_RS08905	0.25	-0.7
2,010,848	-		DDA3937_RS08905	0.25	+1.0
2,010,917	+		DDA3937_RS08905	0.30	-2.2
2,010,917	+		DDA3937_RS08905	0.30	+1.6
2,010,939	+		DDA3937_RS08905	0.32	-2.7
2,010,939	+		DDA3937_RS08905	0.32	-1.1
2,010,940	-		DDA3937_RS08905	0.32	-2.0
2,011,020	+		DDA3937_RS08905	0.37	-1.9
2,011,030	-		DDA3937_RS08905	0.38	-0.9
2,011,039	+		DDA3937_RS08905	0.39	+0.6
2,011,039	+		DDA3937_RS08905	0.39	-2.3
2,011,039	+		DDA3937_RS08905	0.39	+0.5
2,011,039	+		DDA3937_RS08905	0.39	-0.7
2,011,039	+		DDA3937_RS08905	0.39	-0.4
2,011,040	-		DDA3937_RS08905	0.39	-0.7
2,011,040	-		DDA3937_RS08905	0.39	-0.7
2,011,042	+		DDA3937_RS08905	0.39	-1.4
2,011,042	+		DDA3937_RS08905	0.39	+0.5
2,011,043	-		DDA3937_RS08905	0.39	-1.5
2,011,182	+		DDA3937_RS08905	0.48	-1.1
2,011,182	+		DDA3937_RS08905	0.48	+1.7
2,011,183	-		DDA3937_RS08905	0.48	-0.5
2,011,183	-		DDA3937_RS08905	0.48	-0.1
2,011,184	+		DDA3937_RS08905	0.49	+1.9
2,011,184	+		DDA3937_RS08905	0.49	+0.7
2,011,185	-		DDA3937_RS08905	0.49	+1.6
2,011,185	-		DDA3937_RS08905	0.49	-1.6
2,011,185	-		DDA3937_RS08905	0.49	+0.6
2,011,185	-		DDA3937_RS08905	0.49	-2.4
2,011,200	-		DDA3937_RS08905	0.50	-0.5
2,011,200	-		DDA3937_RS08905	0.50	-1.2
2,011,307	+		DDA3937_RS08905	0.57	-0.7
2,011,307	+		DDA3937_RS08905	0.57	-1.1
2,011,307	+		DDA3937_RS08905	0.57	+0.9
2,011,307	+		DDA3937_RS08905	0.57	+1.5
2,011,308	-		DDA3937_RS08905	0.57	-1.2
2,011,369	+		DDA3937_RS08905	0.61	+2.3
2,011,370	-		DDA3937_RS08905	0.61	-0.7
2,011,370	-		DDA3937_RS08905	0.61	-1.8
2,011,408	+		DDA3937_RS08905	0.64	-1.7
2,011,409	-		DDA3937_RS08905	0.64	-0.2
2,011,409	-		DDA3937_RS08905	0.64	-2.2
2,011,491	+		DDA3937_RS08905	0.70	-0.0
2,011,491	+		DDA3937_RS08905	0.70	-1.3
2,011,491	+		DDA3937_RS08905	0.70	-0.4
2,011,522	+		DDA3937_RS08905	0.72	+0.9
2,011,522	+		DDA3937_RS08905	0.72	+2.5
2,011,522	+		DDA3937_RS08905	0.72	+0.9
2,011,523	-		DDA3937_RS08905	0.72	+1.3
2,011,523	-		DDA3937_RS08905	0.72	-0.7
2,011,523	-		DDA3937_RS08905	0.72	-1.3
2,011,604	+		DDA3937_RS08905	0.78	+0.1
2,011,604	+		DDA3937_RS08905	0.78	+1.0
2,011,605	-		DDA3937_RS08905	0.78	+0.5
2,011,605	-		DDA3937_RS08905	0.78	+1.1
2,011,605	-		DDA3937_RS08905	0.78	-0.9
2,011,605	-		DDA3937_RS08905	0.78	-0.3
2,011,610	+		DDA3937_RS08905	0.78	-1.3
2,011,610	+		DDA3937_RS08905	0.78	-0.3
2,011,610	+		DDA3937_RS08905	0.78	-0.9
2,011,611	-		DDA3937_RS08905	0.78	-0.2
2,011,611	-		DDA3937_RS08905	0.78	+1.3
2,011,611	-		DDA3937_RS08905	0.78	-1.1
2,011,611	-		DDA3937_RS08905	0.78	+0.3
2,011,611	-				+4.5
2,011,611	-		DDA3937_RS08905	0.78	-2.3
2,011,613	+				-0.1
2,011,613	+		DDA3937_RS08905	0.78	-0.1
2,011,614	-		DDA3937_RS08905	0.78	-0.1
2,011,614	-		DDA3937_RS08905	0.78	-1.3
2,011,614	-		DDA3937_RS08905	0.78	+0.9
2,011,614	-		DDA3937_RS08905	0.78	+2.3
2,011,677	+		DDA3937_RS08905	0.83	+1.5
2,011,677	+		DDA3937_RS08905	0.83	+2.1
2,011,677	+		DDA3937_RS08905	0.83	-1.5
2,011,678	-		DDA3937_RS08905	0.83	+1.7
2,011,678	-		DDA3937_RS08905	0.83	-1.6
2,011,795	+				+0.1
2,011,796	-				-2.0
2,011,911	-				-1.1
2,011,911	-				+0.9
2,011,966	-				+1.6
2,011,971	+				-0.7
2,011,972	-				-0.7
2,011,972	-				+0.9
2,012,074	+		DDA3937_RS08910	0.12	-0.1
2,012,075	-		DDA3937_RS08910	0.12	-2.5
2,012,077	+		DDA3937_RS08910	0.12	-1.8
2,012,077	+		DDA3937_RS08910	0.12	-0.1
2,012,078	-		DDA3937_RS08910	0.13	-0.9
2,012,111	+		DDA3937_RS08910	0.15	-1.3
2,012,112	-		DDA3937_RS08910	0.15	-0.1
2,012,140	+		DDA3937_RS08910	0.17	+0.0
2,012,140	+		DDA3937_RS08910	0.17	+1.3
2,012,179	+		DDA3937_RS08910	0.20	-2.3
2,012,390	+		DDA3937_RS08910	0.37	-0.5
2,012,391	-		DDA3937_RS08910	0.37	+0.7
2,012,404	+		DDA3937_RS08910	0.38	-1.2
2,012,404	+		DDA3937_RS08910	0.38	+0.9
2,012,562	+		DDA3937_RS08910	0.51	-1.4
2,012,563	-		DDA3937_RS08910	0.51	+0.9
2,012,563	-		DDA3937_RS08910	0.51	-0.4
2,012,600	+		DDA3937_RS08910	0.54	-0.9
2,012,600	+		DDA3937_RS08910	0.54	-1.1
2,012,630	-		DDA3937_RS08910	0.56	-0.9
2,012,631	+		DDA3937_RS08910	0.56	-1.5
2,012,650	+		DDA3937_RS08910	0.58	-0.7
2,012,650	+		DDA3937_RS08910	0.58	-1.6
2,012,650	+		DDA3937_RS08910	0.58	-0.1
2,012,650	+		DDA3937_RS08910	0.58	+0.9
2,012,651	-		DDA3937_RS08910	0.58	-2.5
2,012,655	+		DDA3937_RS08910	0.58	+0.3
2,012,794	+		DDA3937_RS08910	0.69	-0.1
2,012,861	+		DDA3937_RS08910	0.74	+1.4
2,012,861	+		DDA3937_RS08910	0.74	-0.6
2,012,885	-		DDA3937_RS08910	0.76	-2.1
2,012,888	+		DDA3937_RS08910	0.76	-0.3
2,012,888	+		DDA3937_RS08910	0.76	-0.1
2,012,888	+		DDA3937_RS08910	0.76	+1.1
2,012,888	+		DDA3937_RS08910	0.76	-1.3
2,012,888	+		DDA3937_RS08910	0.76	+1.3
2,012,888	+		DDA3937_RS08910	0.76	+1.5
2,012,889	-		DDA3937_RS08910	0.76	-1.3
2,012,889	-		DDA3937_RS08910	0.76	-2.4
2,012,889	-		DDA3937_RS08910	0.76	-2.5
2,012,889	-		DDA3937_RS08910	0.76	-1.1
2,012,889	-		DDA3937_RS08910	0.76	+0.9
2,012,889	-		DDA3937_RS08910	0.76	-1.1