Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS08690 and DDA3937_RS08695 are separated by 59 nucleotides DDA3937_RS08695 and DDA3937_RS08700 are separated by 132 nucleotides
DDA3937_RS08690: DDA3937_RS08690 - helix-turn-helix domain-containing protein, at 1,962,020 to 1,962,784
_RS08690
DDA3937_RS08695: DDA3937_RS08695 - DMT family transporter, at 1,962,844 to 1,963,806
_RS08695
DDA3937_RS08700: DDA3937_RS08700 - helix-turn-helix domain-containing protein, at 1,963,939 to 1,964,814
_RS08700
Position (kb) 1962
1963
1964 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1961.859 kb on + strand at 1961.888 kb on + strand at 1961.888 kb on + strand at 1961.888 kb on + strand at 1961.888 kb on + strand at 1961.888 kb on + strand at 1961.889 kb on - strand at 1961.889 kb on - strand at 1961.889 kb on - strand at 1961.889 kb on - strand at 1961.891 kb on + strand at 1961.891 kb on + strand at 1961.891 kb on + strand at 1961.891 kb on + strand at 1961.891 kb on + strand at 1961.892 kb on - strand at 1961.908 kb on - strand at 1961.908 kb on - strand at 1961.914 kb on + strand at 1961.915 kb on - strand at 1961.915 kb on - strand at 1961.923 kb on + strand at 1961.937 kb on - strand at 1961.937 kb on - strand at 1961.937 kb on - strand at 1961.985 kb on + strand at 1961.986 kb on - strand at 1961.994 kb on + strand at 1961.994 kb on + strand at 1961.994 kb on + strand at 1961.994 kb on + strand at 1961.995 kb on - strand at 1961.995 kb on - strand at 1961.995 kb on - strand at 1961.995 kb on - strand at 1962.025 kb on + strand at 1962.026 kb on - strand at 1962.026 kb on - strand at 1962.027 kb on + strand at 1962.027 kb on + strand at 1962.027 kb on + strand at 1962.027 kb on + strand at 1962.027 kb on + strand at 1962.028 kb on - strand at 1962.028 kb on - strand at 1962.028 kb on - strand at 1962.028 kb on - strand at 1962.028 kb on - strand at 1962.028 kb on - strand at 1962.028 kb on - strand at 1962.028 kb on - strand at 1962.028 kb on - strand at 1962.031 kb on + strand at 1962.031 kb on + strand at 1962.031 kb on + strand at 1962.032 kb on - strand at 1962.032 kb on - strand at 1962.130 kb on + strand, within DDA3937_RS08690 at 1962.130 kb on + strand, within DDA3937_RS08690 at 1962.130 kb on + strand, within DDA3937_RS08690 at 1962.136 kb on + strand, within DDA3937_RS08690 at 1962.136 kb on + strand, within DDA3937_RS08690 at 1962.136 kb on + strand, within DDA3937_RS08690 at 1962.136 kb on + strand, within DDA3937_RS08690 at 1962.136 kb on + strand, within DDA3937_RS08690 at 1962.137 kb on - strand, within DDA3937_RS08690 at 1962.137 kb on - strand, within DDA3937_RS08690 at 1962.137 kb on - strand, within DDA3937_RS08690 at 1962.137 kb on - strand at 1962.137 kb on - strand, within DDA3937_RS08690 at 1962.137 kb on - strand, within DDA3937_RS08690 at 1962.179 kb on + strand, within DDA3937_RS08690 at 1962.180 kb on - strand, within DDA3937_RS08690 at 1962.281 kb on + strand, within DDA3937_RS08690 at 1962.322 kb on + strand, within DDA3937_RS08690 at 1962.322 kb on + strand, within DDA3937_RS08690 at 1962.323 kb on - strand, within DDA3937_RS08690 at 1962.338 kb on + strand, within DDA3937_RS08690 at 1962.338 kb on + strand, within DDA3937_RS08690 at 1962.338 kb on + strand, within DDA3937_RS08690 at 1962.339 kb on - strand, within DDA3937_RS08690 at 1962.339 kb on - strand, within DDA3937_RS08690 at 1962.339 kb on - strand, within DDA3937_RS08690 at 1962.339 kb on - strand, within DDA3937_RS08690 at 1962.339 kb on - strand, within DDA3937_RS08690 at 1962.543 kb on + strand, within DDA3937_RS08690 at 1962.544 kb on - strand, within DDA3937_RS08690 at 1962.544 kb on - strand, within DDA3937_RS08690 at 1962.572 kb on - strand, within DDA3937_RS08690 at 1962.601 kb on - strand, within DDA3937_RS08690 at 1962.674 kb on + strand, within DDA3937_RS08690 at 1962.675 kb on - strand, within DDA3937_RS08690 at 1962.766 kb on + strand at 1962.767 kb on - strand at 1962.783 kb on - strand at 1962.800 kb on + strand at 1962.801 kb on - strand at 1962.801 kb on - strand at 1962.801 kb on - strand at 1962.801 kb on - strand at 1962.801 kb on - strand at 1962.812 kb on + strand at 1962.843 kb on + strand at 1962.855 kb on + strand at 1962.856 kb on - strand at 1962.973 kb on + strand, within DDA3937_RS08695 at 1962.974 kb on - strand, within DDA3937_RS08695 at 1962.976 kb on - strand, within DDA3937_RS08695 at 1962.976 kb on - strand, within DDA3937_RS08695 at 1962.976 kb on - strand, within DDA3937_RS08695 at 1962.983 kb on - strand, within DDA3937_RS08695 at 1963.096 kb on + strand, within DDA3937_RS08695 at 1963.096 kb on + strand at 1963.096 kb on + strand, within DDA3937_RS08695 at 1963.096 kb on + strand, within DDA3937_RS08695 at 1963.096 kb on + strand, within DDA3937_RS08695 at 1963.100 kb on - strand, within DDA3937_RS08695 at 1963.100 kb on - strand, within DDA3937_RS08695 at 1963.100 kb on - strand, within DDA3937_RS08695 at 1963.165 kb on - strand, within DDA3937_RS08695 at 1963.165 kb on - strand, within DDA3937_RS08695 at 1963.374 kb on - strand, within DDA3937_RS08695 at 1963.440 kb on + strand, within DDA3937_RS08695 at 1963.492 kb on - strand at 1963.492 kb on - strand, within DDA3937_RS08695 at 1963.663 kb on + strand, within DDA3937_RS08695 at 1963.696 kb on + strand, within DDA3937_RS08695 at 1963.696 kb on + strand, within DDA3937_RS08695 at 1963.716 kb on + strand at 1963.816 kb on - strand at 1963.899 kb on + strand at 1963.900 kb on - strand at 1963.900 kb on - strand at 1963.900 kb on - strand at 1963.949 kb on - strand at 1963.964 kb on + strand at 1963.964 kb on + strand at 1963.965 kb on - strand at 1963.965 kb on - strand at 1963.967 kb on + strand at 1963.967 kb on + strand at 1963.967 kb on + strand at 1963.968 kb on - strand at 1963.968 kb on - strand at 1963.968 kb on - strand at 1963.968 kb on - strand at 1963.968 kb on - strand at 1963.968 kb on - strand at 1963.975 kb on + strand at 1963.975 kb on + strand at 1963.977 kb on + strand at 1963.978 kb on - strand at 1963.978 kb on - strand at 1963.978 kb on - strand at 1964.010 kb on + strand at 1964.092 kb on + strand, within DDA3937_RS08700 at 1964.092 kb on + strand, within DDA3937_RS08700 at 1964.092 kb on + strand, within DDA3937_RS08700 at 1964.092 kb on + strand, within DDA3937_RS08700 at 1964.093 kb on - strand, within DDA3937_RS08700 at 1964.093 kb on - strand, within DDA3937_RS08700 at 1964.093 kb on - strand, within DDA3937_RS08700 at 1964.093 kb on - strand, within DDA3937_RS08700 at 1964.093 kb on - strand, within DDA3937_RS08700 at 1964.093 kb on - strand, within DDA3937_RS08700 at 1964.093 kb on - strand, within DDA3937_RS08700 at 1964.116 kb on + strand, within DDA3937_RS08700 at 1964.117 kb on - strand, within DDA3937_RS08700 at 1964.117 kb on - strand, within DDA3937_RS08700 at 1964.202 kb on + strand, within DDA3937_RS08700 at 1964.233 kb on + strand, within DDA3937_RS08700 at 1964.233 kb on + strand, within DDA3937_RS08700 at 1964.234 kb on - strand, within DDA3937_RS08700 at 1964.239 kb on - strand, within DDA3937_RS08700 at 1964.313 kb on + strand, within DDA3937_RS08700 at 1964.314 kb on - strand, within DDA3937_RS08700 at 1964.314 kb on - strand, within DDA3937_RS08700 at 1964.348 kb on - strand, within DDA3937_RS08700 at 1964.433 kb on + strand, within DDA3937_RS08700 at 1964.433 kb on + strand, within DDA3937_RS08700 at 1964.434 kb on - strand, within DDA3937_RS08700 at 1964.446 kb on + strand, within DDA3937_RS08700 at 1964.449 kb on - strand, within DDA3937_RS08700 at 1964.449 kb on - strand, within DDA3937_RS08700 at 1964.449 kb on - strand, within DDA3937_RS08700 at 1964.513 kb on + strand, within DDA3937_RS08700 at 1964.514 kb on - strand, within DDA3937_RS08700 at 1964.550 kb on + strand, within DDA3937_RS08700 at 1964.550 kb on + strand, within DDA3937_RS08700 at 1964.550 kb on + strand, within DDA3937_RS08700 at 1964.583 kb on + strand, within DDA3937_RS08700 at 1964.584 kb on - strand, within DDA3937_RS08700 at 1964.641 kb on + strand, within DDA3937_RS08700 at 1964.641 kb on + strand, within DDA3937_RS08700 at 1964.641 kb on + strand, within DDA3937_RS08700 at 1964.641 kb on + strand, within DDA3937_RS08700 at 1964.641 kb on + strand, within DDA3937_RS08700 at 1964.641 kb on + strand, within DDA3937_RS08700 at 1964.642 kb on - strand, within DDA3937_RS08700 at 1964.642 kb on - strand, within DDA3937_RS08700 at 1964.642 kb on - strand, within DDA3937_RS08700 at 1964.642 kb on - strand, within DDA3937_RS08700 at 1964.642 kb on - strand, within DDA3937_RS08700 at 1964.642 kb on - strand, within DDA3937_RS08700 at 1964.642 kb on - strand, within DDA3937_RS08700 at 1964.642 kb on - strand, within DDA3937_RS08700
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 1,961,859 + -0.4 1,961,888 + -3.0 1,961,888 + +1.1 1,961,888 + +0.9 1,961,888 + -1.1 1,961,888 + -0.6 1,961,889 - -1.1 1,961,889 - -1.1 1,961,889 - -1.5 1,961,889 - -1.1 1,961,891 + -0.4 1,961,891 + -0.4 1,961,891 + -0.5 1,961,891 + -0.7 1,961,891 + +0.1 1,961,892 - -1.3 1,961,908 - -1.9 1,961,908 - -1.4 1,961,914 + +2.3 1,961,915 - +0.5 1,961,915 - -0.1 1,961,923 + -2.3 1,961,937 - -2.0 1,961,937 - -0.1 1,961,937 - +0.6 1,961,985 + -0.7 1,961,986 - -0.4 1,961,994 + +0.6 1,961,994 + -0.6 1,961,994 + +0.5 1,961,994 + +0.5 1,961,995 - -0.7 1,961,995 - -1.5 1,961,995 - -1.3 1,961,995 - -0.4 1,962,025 + -2.6 1,962,026 - -0.1 1,962,026 - -1.7 1,962,027 + -1.8 1,962,027 + -0.3 1,962,027 + -1.4 1,962,027 + +0.3 1,962,027 + -0.4 1,962,028 - -1.1 1,962,028 - -1.4 1,962,028 - +2.4 1,962,028 - -0.1 1,962,028 - +0.3 1,962,028 - +1.1 1,962,028 - -1.7 1,962,028 - +1.8 1,962,028 - +1.5 1,962,031 + +2.1 1,962,031 + +1.6 1,962,031 + -0.3 1,962,032 - -0.9 1,962,032 - +2.5 1,962,130 + DDA3937_RS08690 0.14 +1.1 1,962,130 + DDA3937_RS08690 0.14 +0.3 1,962,130 + DDA3937_RS08690 0.14 -2.3 1,962,136 + DDA3937_RS08690 0.15 -0.2 1,962,136 + DDA3937_RS08690 0.15 -0.1 1,962,136 + DDA3937_RS08690 0.15 +0.9 1,962,136 + DDA3937_RS08690 0.15 -0.8 1,962,136 + DDA3937_RS08690 0.15 -2.4 1,962,137 - DDA3937_RS08690 0.15 -1.3 1,962,137 - DDA3937_RS08690 0.15 -3.0 1,962,137 - DDA3937_RS08690 0.15 -1.7 1,962,137 - +0.3 1,962,137 - DDA3937_RS08690 0.15 +0.9 1,962,137 - DDA3937_RS08690 0.15 -1.7 1,962,179 + DDA3937_RS08690 0.21 -1.3 1,962,180 - DDA3937_RS08690 0.21 -1.3 1,962,281 + DDA3937_RS08690 0.34 -2.9 1,962,322 + DDA3937_RS08690 0.39 +1.9 1,962,322 + DDA3937_RS08690 0.39 +0.5 1,962,323 - DDA3937_RS08690 0.40 +0.6 1,962,338 + DDA3937_RS08690 0.42 +0.4 1,962,338 + DDA3937_RS08690 0.42 -0.3 1,962,338 + DDA3937_RS08690 0.42 -0.1 1,962,339 - DDA3937_RS08690 0.42 -0.4 1,962,339 - DDA3937_RS08690 0.42 -0.9 1,962,339 - DDA3937_RS08690 0.42 -1.3 1,962,339 - DDA3937_RS08690 0.42 +0.2 1,962,339 - DDA3937_RS08690 0.42 +1.3 1,962,543 + DDA3937_RS08690 0.68 +0.5 1,962,544 - DDA3937_RS08690 0.68 -0.6 1,962,544 - DDA3937_RS08690 0.68 +2.3 1,962,572 - DDA3937_RS08690 0.72 -1.1 1,962,601 - DDA3937_RS08690 0.76 +0.0 1,962,674 + DDA3937_RS08690 0.85 -1.4 1,962,675 - DDA3937_RS08690 0.86 -1.5 1,962,766 + +0.3 1,962,767 - +0.4 1,962,783 - -1.3 1,962,800 + -2.0 1,962,801 - +1.6 1,962,801 - -1.1 1,962,801 - +1.0 1,962,801 - -2.7 1,962,801 - +3.2 1,962,812 + -3.6 1,962,843 + +0.7 1,962,855 + -0.4 1,962,856 - -1.3 1,962,973 + DDA3937_RS08695 0.13 -1.0 1,962,974 - DDA3937_RS08695 0.13 +2.5 1,962,976 - DDA3937_RS08695 0.14 +0.1 1,962,976 - DDA3937_RS08695 0.14 -1.4 1,962,976 - DDA3937_RS08695 0.14 +1.5 1,962,983 - DDA3937_RS08695 0.14 -1.0 1,963,096 + DDA3937_RS08695 0.26 +1.2 1,963,096 + -0.9 1,963,096 + DDA3937_RS08695 0.26 +0.5 1,963,096 + DDA3937_RS08695 0.26 +0.6 1,963,096 + DDA3937_RS08695 0.26 -1.4 1,963,100 - DDA3937_RS08695 0.27 +0.2 1,963,100 - DDA3937_RS08695 0.27 +1.6 1,963,100 - DDA3937_RS08695 0.27 +1.3 1,963,165 - DDA3937_RS08695 0.33 +0.2 1,963,165 - DDA3937_RS08695 0.33 +1.4 1,963,374 - DDA3937_RS08695 0.55 -1.1 1,963,440 + DDA3937_RS08695 0.62 -0.1 1,963,492 - +3.2 1,963,492 - DDA3937_RS08695 0.67 -1.3 1,963,663 + DDA3937_RS08695 0.85 +0.9 1,963,696 + DDA3937_RS08695 0.88 +3.2 1,963,696 + DDA3937_RS08695 0.88 -2.3 1,963,716 + -1.5 1,963,816 - -1.8 1,963,899 + +0.5 1,963,900 - +0.9 1,963,900 - -0.7 1,963,900 - +1.5 1,963,949 - -0.9 1,963,964 + -2.6 1,963,964 + -1.3 1,963,965 - +1.3 1,963,965 - -1.1 1,963,967 + -1.8 1,963,967 + +0.4 1,963,967 + +2.1 1,963,968 - -2.2 1,963,968 - -0.1 1,963,968 - +0.9 1,963,968 - -2.3 1,963,968 - -1.9 1,963,968 - +0.9 1,963,975 + -1.3 1,963,975 + -1.2 1,963,977 + +1.2 1,963,978 - -0.1 1,963,978 - -2.5 1,963,978 - +0.8 1,964,010 + -0.5 1,964,092 + DDA3937_RS08700 0.17 -1.7 1,964,092 + DDA3937_RS08700 0.17 -0.9 1,964,092 + DDA3937_RS08700 0.17 -1.9 1,964,092 + DDA3937_RS08700 0.17 -2.2 1,964,093 - DDA3937_RS08700 0.18 -1.4 1,964,093 - DDA3937_RS08700 0.18 +0.1 1,964,093 - DDA3937_RS08700 0.18 +0.9 1,964,093 - DDA3937_RS08700 0.18 -0.4 1,964,093 - DDA3937_RS08700 0.18 +1.4 1,964,093 - DDA3937_RS08700 0.18 -2.2 1,964,093 - DDA3937_RS08700 0.18 -2.5 1,964,116 + DDA3937_RS08700 0.20 -0.2 1,964,117 - DDA3937_RS08700 0.20 -0.7 1,964,117 - DDA3937_RS08700 0.20 -0.7 1,964,202 + DDA3937_RS08700 0.30 -1.0 1,964,233 + DDA3937_RS08700 0.34 +0.9 1,964,233 + DDA3937_RS08700 0.34 -0.7 1,964,234 - DDA3937_RS08700 0.34 +0.5 1,964,239 - DDA3937_RS08700 0.34 -1.5 1,964,313 + DDA3937_RS08700 0.43 -0.3 1,964,314 - DDA3937_RS08700 0.43 +1.5 1,964,314 - DDA3937_RS08700 0.43 -0.1 1,964,348 - DDA3937_RS08700 0.47 -0.8 1,964,433 + DDA3937_RS08700 0.56 +3.3 1,964,433 + DDA3937_RS08700 0.56 +0.0 1,964,434 - DDA3937_RS08700 0.57 -1.1 1,964,446 + DDA3937_RS08700 0.58 -2.3 1,964,449 - DDA3937_RS08700 0.58 -0.9 1,964,449 - DDA3937_RS08700 0.58 +0.8 1,964,449 - DDA3937_RS08700 0.58 -0.5 1,964,513 + DDA3937_RS08700 0.66 -0.0 1,964,514 - DDA3937_RS08700 0.66 -0.9 1,964,550 + DDA3937_RS08700 0.70 -2.4 1,964,550 + DDA3937_RS08700 0.70 +0.3 1,964,550 + DDA3937_RS08700 0.70 -1.8 1,964,583 + DDA3937_RS08700 0.74 -0.9 1,964,584 - DDA3937_RS08700 0.74 +0.9 1,964,641 + DDA3937_RS08700 0.80 -0.5 1,964,641 + DDA3937_RS08700 0.80 +0.6 1,964,641 + DDA3937_RS08700 0.80 -1.5 1,964,641 + DDA3937_RS08700 0.80 -1.8 1,964,641 + DDA3937_RS08700 0.80 -1.8 1,964,641 + DDA3937_RS08700 0.80 -0.4 1,964,642 - DDA3937_RS08700 0.80 -0.8 1,964,642 - DDA3937_RS08700 0.80 -0.7 1,964,642 - DDA3937_RS08700 0.80 +0.3 1,964,642 - DDA3937_RS08700 0.80 -1.1 1,964,642 - DDA3937_RS08700 0.80 -0.8 1,964,642 - DDA3937_RS08700 0.80 -1.9 1,964,642 - DDA3937_RS08700 0.80 +1.9 1,964,642 - DDA3937_RS08700 0.80 +1.0
Or see this region's nucleotide sequence