Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08325

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,879,754	+				-0.2
1,879,755	-				+0.8
1,879,761	+				+0.6
1,879,762	-				-2.3
1,879,765	+				-2.0
1,879,766	-				-0.6
1,879,766	-				+1.8
1,879,766	-				-0.6
1,879,766	-				-2.1
1,879,766	-				-1.9
1,879,769	+				+0.0
1,879,769	+				+1.4
1,879,769	+				-1.8
1,879,769	+				+0.5
1,879,769	+				+0.2
1,879,769	+				-2.5
1,879,769	+				-0.2
1,879,770	-				+1.3
1,879,770	-				-0.2
1,879,799	+				+0.8
1,879,799	+				-0.2
1,879,800	-				-1.1
1,879,800	-				-0.8
1,879,800	-				-0.5
1,879,827	+				-0.5
1,879,827	+				-0.8
1,879,828	-				-0.9
1,879,828	-				-0.4
1,879,828	-				+0.7
1,879,850	+				+0.5
1,879,850	+				+0.8
1,879,886	-				+0.7
1,879,886	-				-1.8
1,879,886	-				+1.2
1,879,886	-				-1.2
1,879,886	-				+2.5
1,879,886	-				+0.6
1,879,887	+				+1.3
1,879,887	+				-2.2
1,879,887	+				-1.8
1,879,887	+				-2.6
1,879,888	-				+0.1
1,879,888	-				-2.3
1,879,888	-				+0.8
1,879,888	-				-0.2
1,879,888	-				-2.3
1,879,888	-				-1.5
1,879,888	-				+0.6
1,879,934	-				+0.2
1,879,934	-				+0.6
1,879,997	+		DDA3937_RS08320	0.16	+0.1
1,880,014	+				-0.2
1,880,014	+		DDA3937_RS08320	0.18	-2.4
1,880,015	-		DDA3937_RS08320	0.18	-1.6
1,880,015	-		DDA3937_RS08320	0.18	-1.6
1,880,015	-		DDA3937_RS08320	0.18	+0.9
1,880,015	-		DDA3937_RS08320	0.18	-1.2
1,880,061	+		DDA3937_RS08320	0.25	-0.2
1,880,061	+		DDA3937_RS08320	0.25	-0.4
1,880,062	-		DDA3937_RS08320	0.25	+0.6
1,880,062	-		DDA3937_RS08320	0.25	-1.3
1,880,062	-		DDA3937_RS08320	0.25	-2.0
1,880,070	+		DDA3937_RS08320	0.26	+1.0
1,880,103	-		DDA3937_RS08320	0.30	-0.0
1,880,103	-		DDA3937_RS08320	0.30	-1.0
1,880,110	+		DDA3937_RS08320	0.31	-2.0
1,880,110	+		DDA3937_RS08320	0.31	-0.3
1,880,110	+		DDA3937_RS08320	0.31	-1.3
1,880,110	+		DDA3937_RS08320	0.31	-0.2
1,880,110	+		DDA3937_RS08320	0.31	+1.8
1,880,110	+		DDA3937_RS08320	0.31	-0.5
1,880,110	+		DDA3937_RS08320	0.31	+3.2
1,880,111	-		DDA3937_RS08320	0.32	-0.2
1,880,160	+		DDA3937_RS08320	0.38	+0.8
1,880,160	+		DDA3937_RS08320	0.38	+0.2
1,880,161	-		DDA3937_RS08320	0.38	-0.2
1,880,161	-		DDA3937_RS08320	0.38	-0.8
1,880,161	-		DDA3937_RS08320	0.38	-0.3
1,880,202	+				+1.8
1,880,202	+		DDA3937_RS08320	0.44	-0.2
1,880,202	+		DDA3937_RS08320	0.44	+0.2
1,880,203	-		DDA3937_RS08320	0.44	-1.8
1,880,203	-		DDA3937_RS08320	0.44	+0.5
1,880,203	-		DDA3937_RS08320	0.44	-2.3
1,880,250	+		DDA3937_RS08320	0.51	+0.1
1,880,251	-		DDA3937_RS08320	0.51	-0.8
1,880,365	+		DDA3937_RS08320	0.67	+1.6
1,880,366	-		DDA3937_RS08320	0.67	-0.5
1,880,366	-		DDA3937_RS08320	0.67	-1.7
1,880,366	-				+0.8
1,880,379	+		DDA3937_RS08320	0.68	-1.5
1,880,379	+		DDA3937_RS08320	0.68	-1.1
1,880,379	+		DDA3937_RS08320	0.68	-0.2
1,880,380	-		DDA3937_RS08320	0.69	+1.1
1,880,380	-		DDA3937_RS08320	0.69	-1.5
1,880,458	+				+0.8
1,880,459	-		DDA3937_RS08320	0.79	+0.5
1,880,525	-		DDA3937_RS08320	0.89	-2.2
1,880,525	-		DDA3937_RS08320	0.89	+0.3
1,880,592	+				+0.2
1,880,593	-				-1.2
1,880,593	-				+0.9
1,880,599	+				-0.8
1,880,600	-				+0.2
1,880,607	+				+0.2
1,880,607	+				-0.4
1,880,608	-				-0.2
1,880,608	-				-2.1
1,880,613	+				-1.0
1,880,613	+				-0.8
1,880,613	+				+0.6
1,880,613	+				+0.2
1,880,613	+				-2.6
1,880,613	+				+0.2
1,880,613	+				+1.2
1,880,613	+				+2.4
1,880,613	+				+1.1
1,880,613	+				+0.9
1,880,613	+				+0.5
1,880,613	+				-1.3
1,880,613	+				-2.4
1,880,613	+				-2.0
1,880,613	+				-1.4
1,880,613	+				-0.2
1,880,613	+				-1.4
1,880,614	-				-1.2
1,880,614	-				-0.8
1,880,614	-				-2.0
1,880,614	-				-0.3
1,880,614	-				-0.2
1,880,614	-				-0.5
1,880,614	-				-2.4
1,880,614	-				-0.8
1,880,614	-				-2.9
1,880,614	-				+0.7
1,880,614	-				-1.0
1,880,614	-				+1.0
1,880,614	-				-2.0
1,880,615	+				+0.2
1,880,615	+				+0.9
1,880,615	+				+2.2
1,880,616	-				-0.9
1,880,616	-				-0.5
1,880,633	+				-2.6
1,880,633	+				-0.5
1,880,634	-				+0.8
1,880,634	-				-1.2
1,880,637	+				-0.1
1,880,637	+				-1.1
1,880,638	-				-0.3
1,880,638	-				-1.0
1,880,640	+				-1.0
1,880,640	+				-1.0
1,880,640	+				-1.9
1,880,641	-				-0.2
1,880,641	-				-1.6
1,880,641	-				-0.0
1,880,641	-				+0.8
1,880,700	+				+0.2
1,880,730	+				-1.3
1,880,823	-		DDA3937_RS08325	0.13	-0.3
1,880,934	+		DDA3937_RS08325	0.27	-0.1
1,880,934	+		DDA3937_RS08325	0.27	-0.2
1,880,934	+		DDA3937_RS08325	0.27	-1.6
1,880,934	+		DDA3937_RS08325	0.27	-1.0
1,880,934	+		DDA3937_RS08325	0.27	-0.2
1,880,935	-		DDA3937_RS08325	0.28	+0.3
1,880,935	-		DDA3937_RS08325	0.28	+0.8
1,880,935	-		DDA3937_RS08325	0.28	-0.8
1,880,945	+		DDA3937_RS08325	0.29	+1.8
1,880,946	-		DDA3937_RS08325	0.29	-1.1
1,880,946	-		DDA3937_RS08325	0.29	-0.4
1,880,946	-		DDA3937_RS08325	0.29	-1.3
1,880,982	-		DDA3937_RS08325	0.34	+0.5
1,881,036	+		DDA3937_RS08325	0.41	-0.8
1,881,037	-		DDA3937_RS08325	0.41	-0.2
1,881,037	-		DDA3937_RS08325	0.41	+0.9
1,881,037	-		DDA3937_RS08325	0.41	-1.8
1,881,037	-		DDA3937_RS08325	0.41	+1.7
1,881,075	+		DDA3937_RS08325	0.46	-0.6
1,881,075	+		DDA3937_RS08325	0.46	-0.5
1,881,075	+		DDA3937_RS08325	0.46	+0.0
1,881,076	-		DDA3937_RS08325	0.46	+2.7
1,881,076	-		DDA3937_RS08325	0.46	-1.2
1,881,090	+		DDA3937_RS08325	0.48	-0.5
1,881,133	-		DDA3937_RS08325	0.53	+1.7
1,881,178	-		DDA3937_RS08325	0.59	+1.0
1,881,178	-		DDA3937_RS08325	0.59	-0.5
1,881,202	-		DDA3937_RS08325	0.62	-3.7
1,881,213	+		DDA3937_RS08325	0.64	+1.6
1,881,214	-		DDA3937_RS08325	0.64	-0.8
1,881,270	+		DDA3937_RS08325	0.71	+1.4
1,881,270	+		DDA3937_RS08325	0.71	-0.8
1,881,270	+		DDA3937_RS08325	0.71	-2.2
1,881,270	+		DDA3937_RS08325	0.71	-0.9
1,881,271	-		DDA3937_RS08325	0.71	-0.8
1,881,271	-		DDA3937_RS08325	0.71	+0.1
1,881,357	+		DDA3937_RS08325	0.83	+1.0
1,881,357	+		DDA3937_RS08325	0.83	-2.3
1,881,358	-		DDA3937_RS08325	0.83	-1.0
1,881,359	+		DDA3937_RS08325	0.83	-1.9
1,881,359	+		DDA3937_RS08325	0.83	+1.0
1,881,360	-		DDA3937_RS08325	0.83	+0.7
1,881,360	-		DDA3937_RS08325	0.83	-0.1
1,881,360	-		DDA3937_RS08325	0.83	+2.2
1,881,360	-		DDA3937_RS08325	0.83	-2.3
1,881,360	-		DDA3937_RS08325	0.83	-0.0
1,881,360	-		DDA3937_RS08325	0.83	-1.2
1,881,360	-		DDA3937_RS08325	0.83	-1.6
1,881,390	+		DDA3937_RS08325	0.87	-1.6
1,881,391	-		DDA3937_RS08325	0.87	+0.2
1,881,398	-		DDA3937_RS08325	0.88	+1.2
1,881,528	+				-1.5
1,881,614	+				-0.9
1,881,680	+				-1.5
1,881,680	+				-2.1
1,881,680	+				-1.2
1,881,680	+				-1.3
1,881,680	+				-2.2
1,881,756	+		DDA3937_RS08330	0.21	+0.2
1,881,769	-		DDA3937_RS08330	0.24	-0.9
1,881,811	-		DDA3937_RS08330	0.32	-0.6
1,881,836	+		DDA3937_RS08330	0.38	-0.2
1,881,846	-		DDA3937_RS08330	0.40	-0.8
1,881,912	+		DDA3937_RS08330	0.54	+1.2
1,881,952	+		DDA3937_RS08330	0.62	-0.8
1,881,952	+		DDA3937_RS08330	0.62	-0.8
1,881,952	+		DDA3937_RS08330	0.62	+0.2
1,881,952	+		DDA3937_RS08330	0.62	-2.2
1,881,952	+		DDA3937_RS08330	0.62	+0.1
1,881,952	+		DDA3937_RS08330	0.62	-1.6
1,881,952	+		DDA3937_RS08330	0.62	+1.2
1,881,952	+		DDA3937_RS08330	0.62	+3.3
1,881,952	+		DDA3937_RS08330	0.62	-1.5
1,881,952	+		DDA3937_RS08330	0.62	+0.7
1,881,953	-		DDA3937_RS08330	0.63	-0.4
1,882,048	+		DDA3937_RS08330	0.83	-0.8
1,882,049	-		DDA3937_RS08330	0.83	-1.3
1,882,049	-				+0.2
1,882,049	-		DDA3937_RS08330	0.83	-0.7
1,882,049	-		DDA3937_RS08330	0.83	-0.8
1,882,074	+		DDA3937_RS08330	0.88	-1.4
1,882,145	-				+0.8
1,882,149	-				-0.2
1,882,191	+		DDA3937_RS22075	0.10	+0.6
1,882,192	-		DDA3937_RS22075	0.10	+1.1
1,882,192	-		DDA3937_RS22075	0.10	-1.9
1,882,271	+		DDA3937_RS22075	0.33	-0.6
1,882,271	+		DDA3937_RS22075	0.33	+0.2
1,882,271	+		DDA3937_RS22075	0.33	-0.5
1,882,272	-		DDA3937_RS22075	0.33	+1.4
1,882,272	-		DDA3937_RS22075	0.33	-3.0
1,882,339	-		DDA3937_RS22075	0.53	-1.1
1,882,342	-		DDA3937_RS22075	0.53	-2.1
1,882,342	-		DDA3937_RS22075	0.53	-2.3
1,882,442	+		DDA3937_RS22075	0.82	-0.5
1,882,442	+		DDA3937_RS22075	0.82	-1.1
1,882,442	+		DDA3937_RS22075	0.82	-1.3
1,882,442	+		DDA3937_RS22075	0.82	-2.4
1,882,443	-		DDA3937_RS22075	0.82	-0.8
1,882,443	-		DDA3937_RS22075	0.82	-1.6
1,882,444	+		DDA3937_RS22075	0.83	+1.2
1,882,444	+		DDA3937_RS22075	0.83	-0.8
1,882,444	+		DDA3937_RS22075	0.83	-0.8
1,882,445	-		DDA3937_RS22075	0.83	-0.8
1,882,445	-		DDA3937_RS22075	0.83	+1.2
1,882,470	+				-0.2
1,882,470	+				+2.6
1,882,471	-				-2.3