Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08065

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,827,683	+		DDA3937_RS08060	0.55	-0.2
1,827,683	+		DDA3937_RS08060	0.55	+0.9
1,827,684	-		DDA3937_RS08060	0.55	-2.0
1,828,063	+		DDA3937_RS08060	0.76	+0.5
1,828,064	-		DDA3937_RS08060	0.76	+0.3
1,828,197	+				-0.2
1,828,198	-		DDA3937_RS08060	0.84	-0.8
1,828,198	-		DDA3937_RS08060	0.84	-0.5
1,828,198	-		DDA3937_RS08060	0.84	-1.0
1,828,260	+		DDA3937_RS08060	0.87	+0.2
1,828,260	+		DDA3937_RS08060	0.87	-1.4
1,828,260	+		DDA3937_RS08060	0.87	+0.7
1,828,260	+		DDA3937_RS08060	0.87	-1.9
1,828,260	+		DDA3937_RS08060	0.87	-2.0
1,828,260	+		DDA3937_RS08060	0.87	-2.0
1,828,260	+		DDA3937_RS08060	0.87	-1.1
1,828,260	+		DDA3937_RS08060	0.87	-1.3
1,828,260	+		DDA3937_RS08060	0.87	+0.1
1,828,260	+		DDA3937_RS08060	0.87	-0.5
1,828,260	+		DDA3937_RS08060	0.87	+1.0
1,828,261	-		DDA3937_RS08060	0.87	-1.6
1,828,261	-		DDA3937_RS08060	0.87	-1.0
1,828,323	+				-0.3
1,828,402	+				-0.8
1,828,402	+				-1.9
1,828,403	-				-0.2
1,828,403	-				-0.2
1,828,428	+				-0.8
1,828,428	+				+0.1
1,828,428	+				+0.7
1,828,480	+				+0.0
1,828,480	+				-1.9
1,828,480	+				-2.0
1,828,480	+				+1.8
1,828,480	+				-1.2
1,828,481	-				-1.0
1,828,481	-				-0.3
1,828,481	-				-2.3
1,828,481	-				+1.1
1,828,481	-				+0.2
1,828,483	+				-0.3
1,828,536	+				-3.7
1,828,536	+				+1.0
1,828,536	+				+3.0
1,828,536	+				+3.7
1,828,537	-				-0.5
1,828,537	-				-1.4
1,828,539	+				-0.9
1,828,539	+				-0.6
1,828,539	+				-2.3
1,828,540	-				-0.8
1,828,540	-				-2.4
1,828,540	-				+1.0
1,828,542	+				-1.5
1,828,542	+				-2.5
1,828,542	+				-2.4
1,828,542	+				+0.2
1,828,542	+				-0.9
1,828,543	-				-0.2
1,828,543	-				+0.2
1,828,543	-				-1.2
1,828,543	-				-0.8
1,828,543	-				-0.5
1,828,543	-				+0.3
1,828,543	-				+1.2
1,828,543	-				+1.4
1,828,543	-				-3.1
1,828,543	-				+0.2
1,828,545	+				+0.5
1,828,545	+				+0.3
1,828,545	+				-2.3
1,828,545	+				-1.2
1,828,545	+				-1.2
1,828,546	-				-1.3
1,828,546	-				+2.2
1,828,546	-				-2.6
1,828,546	-				-1.5
1,828,546	-				-1.2
1,828,546	-				+1.0
1,828,548	+				-0.4
1,828,548	+				-2.3
1,828,549	-				-1.1
1,828,549	-				+0.1
1,828,549	-				-0.8
1,828,549	-				-1.9
1,828,549	-				+2.1
1,828,549	-				+1.1
1,828,551	+				-1.0
1,828,551	+				+0.1
1,828,551	+				-1.3
1,828,552	-				-1.0
1,828,552	-				-0.5
1,828,552	-				-1.9
1,828,552	-				-0.2
1,828,552	-				-1.7
1,828,552	-				-0.5
1,828,554	+				-0.3
1,828,554	+				-1.0
1,828,554	+				+0.6
1,828,554	+				-1.0
1,828,554	+				-0.2
1,828,554	+				-2.3
1,828,555	-				-0.8
1,828,555	-				-0.8
1,828,555	-				-1.2
1,828,557	+				-2.0
1,828,557	+				-2.9
1,828,557	+				+1.2
1,828,557	+				+1.2
1,828,557	+				-0.5
1,828,557	+				+1.4
1,828,557	+				-0.7
1,828,558	-				-1.8
1,828,558	-				-1.8
1,828,558	-				+0.2
1,828,558	-				-0.5
1,828,558	-				+0.1
1,828,558	-				-2.1
1,828,560	+				-3.4
1,828,560	+				+1.4
1,828,561	-				+0.7
1,828,563	+				+0.2
1,828,563	+				-0.2
1,828,563	+				-0.1
1,828,563	+				-1.4
1,828,564	-				-1.0
1,828,577	+				-0.2
1,828,578	-				+1.0
1,828,790	-		DDA3937_RS08065	0.21	-1.8
1,828,918	+		DDA3937_RS08065	0.35	+0.2
1,828,919	-		DDA3937_RS08065	0.35	-0.2
1,828,921	-		DDA3937_RS08065	0.35	-2.3
1,828,927	+		DDA3937_RS08065	0.35	-0.8
1,828,928	-		DDA3937_RS08065	0.36	-2.0
1,829,165	-		DDA3937_RS08065	0.61	-0.8
1,829,165	-		DDA3937_RS08065	0.61	-1.0
1,829,165	-		DDA3937_RS08065	0.61	-1.6
1,829,175	+		DDA3937_RS08065	0.62	-1.2
1,829,175	+		DDA3937_RS08065	0.62	-0.6
1,829,176	-		DDA3937_RS08065	0.62	-1.6
1,829,176	-		DDA3937_RS08065	0.62	-1.2
1,829,191	+		DDA3937_RS08065	0.64	+0.0
1,829,199	+		DDA3937_RS08065	0.64	-2.3
1,829,272	+		DDA3937_RS08065	0.72	+1.2
1,829,272	+		DDA3937_RS08065	0.72	-0.5
1,829,272	+		DDA3937_RS08065	0.72	-1.3
1,829,470	+				+0.7
1,829,470	+				+0.2
1,829,470	+				+0.2
1,829,470	+				-1.9
1,829,470	+				-1.2
1,829,470	+				-1.7
1,829,471	-				+1.6
1,829,471	-				-0.5
1,829,471	-				+0.2
1,829,525	+				-1.8
1,829,525	+				-3.7
1,829,525	+				-0.5
1,829,525	+				-1.5
1,829,525	+				+0.1
1,829,526	-				+0.2
1,829,526	-				-1.0
1,829,526	-				-2.5
1,829,526	-				+0.6
1,829,526	-				-0.2
1,829,526	-				+0.6
1,829,526	-				-2.3
1,829,526	-				-0.8
1,829,526	-				-0.4
1,829,723	+		DDA3937_RS08070	0.19	+0.1
1,829,723	+		DDA3937_RS08070	0.19	-2.1
1,829,724	-		DDA3937_RS08070	0.19	-0.4
1,829,724	-		DDA3937_RS08070	0.19	-0.0
1,829,724	-		DDA3937_RS08070	0.19	+0.2
1,829,724	-		DDA3937_RS08070	0.19	+0.4
1,829,741	+		DDA3937_RS08070	0.20	-1.0
1,829,742	-		DDA3937_RS08070	0.20	-1.0
1,829,745	+		DDA3937_RS08070	0.21	-0.1
1,829,745	+		DDA3937_RS08070	0.21	-0.2
1,829,746	-		DDA3937_RS08070	0.21	-0.4
1,829,746	-		DDA3937_RS08070	0.21	-3.7
1,829,746	-		DDA3937_RS08070	0.21	+0.6
1,829,746	-		DDA3937_RS08070	0.21	+0.8
1,829,746	-		DDA3937_RS08070	0.21	+0.0
1,829,781	+		DDA3937_RS08070	0.24	+1.0
1,829,781	+		DDA3937_RS08070	0.24	-1.3
1,829,782	-		DDA3937_RS08070	0.24	-1.8
1,829,782	-		DDA3937_RS08070	0.24	-1.3
1,829,782	-		DDA3937_RS08070	0.24	-1.2
1,829,850	+		DDA3937_RS08070	0.31	+1.2
1,829,850	+		DDA3937_RS08070	0.31	-0.4
1,829,875	-		DDA3937_RS08070	0.33	-1.0
1,829,895	-				+0.2
1,829,895	-		DDA3937_RS08070	0.35	-0.5
1,830,062	+		DDA3937_RS08070	0.51	-0.8
1,830,063	-				+0.2
1,830,155	-		DDA3937_RS08070	0.60	-1.3
1,830,225	+		DDA3937_RS08070	0.66	-0.7
1,830,225	+		DDA3937_RS08070	0.66	-0.2
1,830,225	+		DDA3937_RS08070	0.66	-0.8
1,830,226	-		DDA3937_RS08070	0.67	-0.3
1,830,226	-		DDA3937_RS08070	0.67	+0.6
1,830,226	-		DDA3937_RS08070	0.67	-1.2
1,830,234	+		DDA3937_RS08070	0.67	-1.5
1,830,234	+		DDA3937_RS08070	0.67	+3.2
1,830,234	+		DDA3937_RS08070	0.67	+0.5
1,830,234	+		DDA3937_RS08070	0.67	-2.3
1,830,234	+		DDA3937_RS08070	0.67	-0.2
1,830,234	+		DDA3937_RS08070	0.67	+0.8
1,830,234	+		DDA3937_RS08070	0.67	-1.0
1,830,235	-		DDA3937_RS08070	0.67	-0.0
1,830,235	-		DDA3937_RS08070	0.67	+0.3
1,830,347	+		DDA3937_RS08070	0.78	-2.0
1,830,347	+		DDA3937_RS08070	0.78	-1.5
1,830,348	-		DDA3937_RS08070	0.78	-1.3
1,830,348	-		DDA3937_RS08070	0.78	-0.8
1,830,354	+		DDA3937_RS08070	0.79	-2.0
1,830,355	-		DDA3937_RS08070	0.79	-2.8
1,830,451	+		DDA3937_RS08070	0.88	+0.5
1,830,451	+		DDA3937_RS08070	0.88	-1.5
1,830,480	+				-1.3
1,830,528	-				+0.8