Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08030

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,819,153	+		DDA3937_RS08025	0.10	+1.5
1,819,163	+		DDA3937_RS08025	0.11	-2.1
1,819,164	-		DDA3937_RS08025	0.11	-0.5
1,819,227	+		DDA3937_RS08025	0.18	-0.9
1,819,252	+		DDA3937_RS08025	0.21	+0.8
1,819,253	-		DDA3937_RS08025	0.21	+1.5
1,819,380	+		DDA3937_RS08025	0.35	+1.8
1,819,381	-		DDA3937_RS08025	0.35	-1.1
1,819,388	+		DDA3937_RS08025	0.36	-1.8
1,819,510	-		DDA3937_RS08025	0.50	-0.5
1,819,510	-		DDA3937_RS08025	0.50	-0.8
1,819,519	-		DDA3937_RS08025	0.51	-3.6
1,819,532	+		DDA3937_RS08025	0.52	-2.2
1,819,532	+		DDA3937_RS08025	0.52	-0.8
1,819,533	-		DDA3937_RS08025	0.52	+0.6
1,819,533	-		DDA3937_RS08025	0.52	-3.1
1,819,533	-		DDA3937_RS08025	0.52	-1.3
1,819,584	+		DDA3937_RS08025	0.58	-0.2
1,819,584	+		DDA3937_RS08025	0.58	-1.8
1,819,584	+		DDA3937_RS08025	0.58	-0.2
1,819,584	+		DDA3937_RS08025	0.58	+0.0
1,819,585	-		DDA3937_RS08025	0.58	-1.3
1,819,585	-		DDA3937_RS08025	0.58	+0.6
1,819,683	+		DDA3937_RS08025	0.69	-2.8
1,819,739	+		DDA3937_RS08025	0.75	-0.7
1,819,740	-		DDA3937_RS08025	0.75	+0.1
1,819,740	-		DDA3937_RS08025	0.75	-0.5
1,819,740	-		DDA3937_RS08025	0.75	-0.3
1,819,767	+		DDA3937_RS08025	0.78	+1.3
1,819,767	+		DDA3937_RS08025	0.78	-1.1
1,819,768	-		DDA3937_RS08025	0.78	-2.9
1,819,768	-		DDA3937_RS08025	0.78	+0.8
1,819,768	-		DDA3937_RS08025	0.78	-2.4
1,819,819	+		DDA3937_RS08025	0.84	-1.9
1,819,820	-		DDA3937_RS08025	0.84	+1.8
1,819,875	+				-2.6
1,819,875	+				+0.8
1,819,876	-				-0.5
1,819,876	-				-1.3
1,819,884	+				-0.6
1,819,945	+				-0.5
1,819,946	-				+0.7
1,819,953	+				+0.3
1,819,962	+				-0.8
1,819,962	+				+0.5
1,819,963	-				-0.4
1,819,963	-				-3.0
1,819,963	-				-2.3
1,819,963	-				+0.5
1,819,963	-				-0.8
1,819,963	-				+0.7
1,819,986	-				-0.4
1,820,025	+				+2.3
1,820,036	+				+1.7
1,820,036	+				+3.8
1,820,036	+				+2.5
1,820,036	+				+1.0
1,820,036	+				+1.4
1,820,036	+				-1.6
1,820,036	+				-0.6
1,820,037	-				-2.0
1,820,037	-				-2.1
1,820,037	-				-1.5
1,820,037	-				-1.9
1,820,037	-				+1.8
1,820,037	-				-1.2
1,820,055	+				+0.7
1,820,067	+				-0.1
1,820,067	+				+2.2
1,820,116	+				-3.0
1,820,116	+				+2.6
1,820,124	+				+0.1
1,820,125	-				+0.2
1,820,125	-				-0.5
1,820,125	-				-0.8
1,820,125	-				-0.5
1,820,142	+				-2.2
1,820,142	+				-3.8
1,820,142	+				+2.8
1,820,142	+				-0.3
1,820,143	-				-1.4
1,820,143	-				-3.5
1,820,241	-				-1.5
1,820,241	-				-2.0
1,820,241	-				-1.3
1,820,241	-				-1.2
1,820,257	+				-0.5
1,820,317	+				+1.8
1,820,318	-		DDA3937_RS08030	0.12	+1.4
1,820,371	+		DDA3937_RS08030	0.16	+0.6
1,820,371	+		DDA3937_RS08030	0.16	+1.4
1,820,371	+		DDA3937_RS08030	0.16	-2.8
1,820,371	+		DDA3937_RS08030	0.16	-2.8
1,820,371	+				+1.8
1,820,372	-		DDA3937_RS08030	0.16	-2.3
1,820,372	-		DDA3937_RS08030	0.16	-0.3
1,820,414	-		DDA3937_RS08030	0.19	+0.5
1,820,481	-		DDA3937_RS08030	0.23	+0.7
1,820,489	+		DDA3937_RS08030	0.23	+0.3
1,820,489	+		DDA3937_RS08030	0.23	-1.6
1,820,489	+		DDA3937_RS08030	0.23	-0.5
1,820,490	-		DDA3937_RS08030	0.23	-0.2
1,820,644	+		DDA3937_RS08030	0.33	+1.1
1,820,652	+				+2.3
1,820,652	+		DDA3937_RS08030	0.34	-2.0
1,820,652	+				+0.2
1,820,652	+		DDA3937_RS08030	0.34	+3.0
1,820,652	+		DDA3937_RS08030	0.34	+0.3
1,820,652	+		DDA3937_RS08030	0.34	-1.5
1,820,652	+		DDA3937_RS08030	0.34	+0.7
1,820,652	+		DDA3937_RS08030	0.34	-1.1
1,820,653	-		DDA3937_RS08030	0.34	-0.2
1,820,653	-		DDA3937_RS08030	0.34	-1.8
1,820,653	-		DDA3937_RS08030	0.34	-1.2
1,820,653	-		DDA3937_RS08030	0.34	-1.6
1,820,653	-		DDA3937_RS08030	0.34	-1.3
1,820,684	+		DDA3937_RS08030	0.36	+0.2
1,820,684	+		DDA3937_RS08030	0.36	-0.8
1,820,684	+		DDA3937_RS08030	0.36	-1.2
1,820,684	+		DDA3937_RS08030	0.36	+1.6
1,820,685	-		DDA3937_RS08030	0.36	-0.8
1,820,685	-		DDA3937_RS08030	0.36	+0.7
1,820,686	+		DDA3937_RS08030	0.36	-0.3
1,820,686	+		DDA3937_RS08030	0.36	-0.7
1,820,726	+		DDA3937_RS08030	0.39	-2.7
1,820,726	+		DDA3937_RS08030	0.39	-1.9
1,820,727	-		DDA3937_RS08030	0.39	+0.3
1,820,912	+		DDA3937_RS08030	0.51	+2.3
1,820,912	+		DDA3937_RS08030	0.51	+2.2
1,820,913	-		DDA3937_RS08030	0.51	-0.8
1,820,913	-		DDA3937_RS08030	0.51	+2.7
1,820,913	-		DDA3937_RS08030	0.51	+0.0
1,821,102	-		DDA3937_RS08030	0.63	-2.3
1,821,128	+		DDA3937_RS08030	0.65	+1.4
1,821,308	+		DDA3937_RS08030	0.77	+0.3
1,821,309	-		DDA3937_RS08030	0.77	-1.3
1,821,309	-				+0.8
1,821,586	+				-1.3
1,821,610	+				+0.0
1,821,610	+				+1.8
1,821,610	+				-1.8
1,821,610	+				-2.0
1,821,610	+				+0.3
1,821,610	+				-0.5
1,821,610	+				+2.2
1,821,610	+				+1.2
1,821,610	+				+0.1
1,821,611	-				-2.9
1,821,611	-				-2.8
1,821,611	-				-3.3
1,821,611	-				-1.9
1,821,614	+				-1.5
1,821,614	+				-0.2
1,821,614	+				+0.8
1,821,614	+				+0.6
1,821,614	+				-1.2
1,821,614	+				+3.3
1,821,614	+				+0.1
1,821,614	+				-2.1
1,821,615	-				-0.2
1,821,615	-				-0.6
1,821,636	-				-2.3
1,821,648	-				-2.1
1,821,665	+				-1.2
1,821,666	-				-1.5
1,821,710	+				+0.1
1,821,711	-				-2.2
1,821,721	+				+2.7
1,821,779	+				-0.8
1,821,780	-				-0.8
1,821,790	+				+2.4
1,821,803	-				-0.6
1,821,908	+				-2.9
1,821,917	-				+0.6
1,821,987	+		DDA3937_RS08035	0.11	-2.3
1,822,137	+		DDA3937_RS08035	0.28	-1.3
1,822,138	-		DDA3937_RS08035	0.28	-0.8
1,822,214	-		DDA3937_RS08035	0.37	-1.9
1,822,247	-		DDA3937_RS08035	0.40	+1.1
1,822,247	-		DDA3937_RS08035	0.40	-0.8
1,822,247	-		DDA3937_RS08035	0.40	-1.8
1,822,247	-		DDA3937_RS08035	0.40	-1.3
1,822,247	-		DDA3937_RS08035	0.40	+0.2
1,822,295	-		DDA3937_RS08035	0.46	-0.5
1,822,295	-		DDA3937_RS08035	0.46	-0.4
1,822,295	-		DDA3937_RS08035	0.46	-1.6
1,822,295	-		DDA3937_RS08035	0.46	-1.0
1,822,349	+		DDA3937_RS08035	0.52	-2.3
1,822,372	+		DDA3937_RS08035	0.55	+0.0
1,822,372	+		DDA3937_RS08035	0.55	-2.9
1,822,373	-		DDA3937_RS08035	0.55	+0.9
1,822,464	+		DDA3937_RS08035	0.65	+0.9
1,822,521	+		DDA3937_RS08035	0.71	+0.0
1,822,550	-		DDA3937_RS08035	0.75	+1.2
1,822,550	-		DDA3937_RS08035	0.75	+0.8
1,822,633	+		DDA3937_RS08035	0.84	+0.2
1,822,633	+		DDA3937_RS08035	0.84	-2.1
1,822,633	+		DDA3937_RS08035	0.84	-1.0
1,822,634	-		DDA3937_RS08035	0.84	-1.2