Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07800

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,760,689	+				+1.3
1,760,719	-				-1.5
1,760,719	-				-0.5
1,760,719	-				-0.8
1,760,751	-				-0.1
1,760,751	-				+1.0
1,760,751	-				+3.0
1,760,751	-				-2.1
1,760,751	-				+0.4
1,760,753	-				+0.9
1,760,762	-				+0.6
1,760,875	+				-0.4
1,760,875	+				-1.1
1,760,875	+				-2.2
1,760,875	+				-0.4
1,760,875	+				-1.0
1,760,875	+				+0.3
1,760,875	+				-1.6
1,760,875	+				-0.6
1,760,875	+				-0.3
1,760,875	+				+0.8
1,760,875	+				-0.1
1,760,881	-				-0.6
1,760,897	+				-1.9
1,760,898	-				-0.3
1,760,898	-				-0.1
1,760,901	+				-0.1
1,760,902	-				+0.8
1,760,917	-				+0.0
1,760,927	-				-1.6
1,760,978	+				-0.7
1,760,979	-				+0.0
1,761,018	+		DDA3937_RS22065	0.21	-2.4
1,761,019	-		DDA3937_RS22065	0.21	-1.0
1,761,029	+		DDA3937_RS22065	0.24	+1.7
1,761,029	+		DDA3937_RS22065	0.24	-0.4
1,761,030	-		DDA3937_RS22065	0.25	-0.9
1,761,031	+		DDA3937_RS22065	0.25	-0.9
1,761,032	-		DDA3937_RS22065	0.25	-0.9
1,761,055	+		DDA3937_RS22065	0.33	-2.4
1,761,055	+		DDA3937_RS22065	0.33	-2.2
1,761,055	+		DDA3937_RS22065	0.33	-1.8
1,761,055	+		DDA3937_RS22065	0.33	+1.7
1,761,055	+		DDA3937_RS22065	0.33	-0.9
1,761,056	-		DDA3937_RS22065	0.33	+0.1
1,761,056	-		DDA3937_RS22065	0.33	-1.5
1,761,056	-		DDA3937_RS22065	0.33	-1.8
1,761,056	-		DDA3937_RS22065	0.33	+0.7
1,761,058	+		DDA3937_RS22065	0.34	-1.9
1,761,068	+		DDA3937_RS22065	0.37	-0.7
1,761,068	+		DDA3937_RS22065	0.37	-3.4
1,761,069	-		DDA3937_RS22065	0.38	-0.8
1,761,069	-		DDA3937_RS22065	0.38	-0.9
1,761,069	-		DDA3937_RS22065	0.38	-1.3
1,761,070	+				+0.3
1,761,070	+		DDA3937_RS22065	0.38	-0.7
1,761,071	-				-0.1
1,761,110	-		DDA3937_RS22065	0.51	-0.4
1,761,197	+		DDA3937_RS22065	0.80	-1.5
1,761,198	-		DDA3937_RS22065	0.80	-1.4
1,761,198	-				+0.9
1,761,198	-		DDA3937_RS22065	0.80	-0.2
1,761,198	-		DDA3937_RS22065	0.80	-1.9
1,761,248	+				-0.5
1,761,248	+				+0.1
1,761,248	+				-0.5
1,761,248	+				-2.3
1,761,249	-				-2.5
1,761,249	-				+1.9
1,761,249	-				+0.2
1,761,251	+				+0.1
1,761,251	+				-2.0
1,761,251	+				+0.3
1,761,252	-				-1.3
1,761,261	+				-2.3
1,761,262	-				-1.3
1,761,262	-				-1.6
1,761,262	-				+0.1
1,761,262	-				+2.1
1,761,265	+				-2.9
1,761,265	+				+0.1
1,761,265	+				+1.5
1,761,266	-				-0.3
1,761,266	-				+0.5
1,761,266	-				-0.9
1,761,266	-				+1.5
1,761,270	+				+2.2
1,761,271	-				-0.8
1,761,292	+		DDA3937_RS22070	0.11	-0.7
1,761,292	+		DDA3937_RS22070	0.11	+1.3
1,761,306	+		DDA3937_RS22070	0.17	-1.1
1,761,373	-		DDA3937_RS22070	0.48	-2.8
1,761,423	+		DDA3937_RS22070	0.71	-0.5
1,761,423	+		DDA3937_RS22070	0.71	+0.5
1,761,423	+		DDA3937_RS22070	0.71	+0.7
1,761,423	+		DDA3937_RS22070	0.71	-1.2
1,761,424	-		DDA3937_RS22070	0.72	-0.1
1,761,424	-		DDA3937_RS22070	0.72	-2.5
1,761,424	-		DDA3937_RS22070	0.72	-1.9
1,761,424	-		DDA3937_RS22070	0.72	-2.1
1,761,424	-		DDA3937_RS22070	0.72	-1.0
1,761,424	-		DDA3937_RS22070	0.72	-0.2
1,761,424	-		DDA3937_RS22070	0.72	+1.5
1,761,424	-		DDA3937_RS22070	0.72	-0.5
1,761,424	-		DDA3937_RS22070	0.72	+1.1
1,761,424	-		DDA3937_RS22070	0.72	-1.1
1,761,424	-		DDA3937_RS22070	0.72	-2.2
1,761,424	-		DDA3937_RS22070	0.72	-0.6
1,761,424	-		DDA3937_RS22070	0.72	-1.7
1,761,450	-		DDA3937_RS22070	0.84	-0.5
1,761,497	-				-0.5
1,761,527	-				+2.3
1,761,527	-				+0.5
1,761,543	-				+0.9
1,761,543	-				+0.4
1,761,543	-				+1.3
1,761,543	-				-1.3
1,761,694	+		DDA3937_RS07800	0.14	+1.6
1,761,768	+		DDA3937_RS07800	0.21	-0.4
1,761,769	-		DDA3937_RS07800	0.22	-2.2
1,761,848	+		DDA3937_RS07800	0.29	+0.5
1,761,848	+		DDA3937_RS07800	0.29	-0.7
1,761,849	-		DDA3937_RS07800	0.29	-2.0
1,761,849	-		DDA3937_RS07800	0.29	+3.2
1,761,987	+		DDA3937_RS07800	0.42	+0.1
1,761,987	+		DDA3937_RS07800	0.42	+0.8
1,761,987	+		DDA3937_RS07800	0.42	-1.3
1,761,987	+		DDA3937_RS07800	0.42	+2.1
1,761,987	+		DDA3937_RS07800	0.42	+1.4
1,761,987	+		DDA3937_RS07800	0.42	+0.7
1,761,988	-		DDA3937_RS07800	0.42	+0.2
1,761,988	-		DDA3937_RS07800	0.42	-1.0
1,761,988	-		DDA3937_RS07800	0.42	+0.6
1,761,988	-		DDA3937_RS07800	0.42	-2.1
1,761,988	-				+1.9
1,761,990	+		DDA3937_RS07800	0.43	+1.0
1,761,990	+		DDA3937_RS07800	0.43	-1.2
1,761,991	-		DDA3937_RS07800	0.43	+0.9
1,761,991	-		DDA3937_RS07800	0.43	-1.1
1,761,991	-		DDA3937_RS07800	0.43	+1.9
1,761,991	-		DDA3937_RS07800	0.43	+0.4
1,761,991	-		DDA3937_RS07800	0.43	+0.5
1,761,993	+		DDA3937_RS07800	0.43	+0.5
1,761,993	+		DDA3937_RS07800	0.43	+0.2
1,761,993	+		DDA3937_RS07800	0.43	+1.9
1,762,073	+		DDA3937_RS07800	0.50	-3.2
1,762,074	-		DDA3937_RS07800	0.50	-1.6
1,762,205	+		DDA3937_RS07800	0.63	-0.5
1,762,287	+		DDA3937_RS07800	0.71	+1.0
1,762,288	-		DDA3937_RS07800	0.71	-1.5
1,762,288	-		DDA3937_RS07800	0.71	-0.1
1,762,288	-		DDA3937_RS07800	0.71	+2.3
1,762,383	+		DDA3937_RS07800	0.80	+0.3
1,762,384	-		DDA3937_RS07800	0.80	-0.5
1,762,571	+				-0.6
1,762,571	+				+0.1
1,762,571	+				-1.9
1,762,571	+				+0.1
1,762,572	-				-2.7
1,762,572	-				-0.1
1,762,581	+				-1.8
1,762,581	+				-1.9
1,762,582	-				-2.4
1,762,582	-				-0.3
1,762,582	-				-0.7
1,762,582	-				-2.4
1,762,582	-				-0.7
1,762,582	-				-0.1
1,762,596	+				-0.7
1,762,596	+				-2.1
1,762,597	-				-1.3
1,762,597	-				-0.1
1,762,597	-				-0.9
1,762,615	+				-2.0
1,762,616	-				-1.7
1,762,635	+				-0.9
1,762,659	+				-1.1
1,762,713	+				+0.3
1,762,713	+				+0.8
1,762,713	+				-1.3
1,762,714	-				-1.7
1,762,715	+				+2.1
1,762,715	+				-0.7
1,762,715	+				-0.1
1,762,716	-				+1.0
1,762,716	-				+0.2
1,762,727	+				-0.7
1,762,740	+				-0.1
1,762,741	-				+0.6
1,762,741	-				-1.7
1,762,741	-				+0.3
1,762,741	-				-1.8
1,762,768	-				-1.2
1,762,838	+				+1.5
1,762,914	+		DDA3937_RS07805	0.16	+0.7
1,762,914	+		DDA3937_RS07805	0.16	-2.7
1,762,915	-		DDA3937_RS07805	0.16	-1.7
1,762,932	+		DDA3937_RS07805	0.17	+0.3
1,762,932	+		DDA3937_RS07805	0.17	+0.7
1,762,983	-		DDA3937_RS07805	0.23	-0.9
1,763,035	+		DDA3937_RS07805	0.29	-1.3
1,763,035	+		DDA3937_RS07805	0.29	+1.0
1,763,035	+		DDA3937_RS07805	0.29	-0.7
1,763,045	+		DDA3937_RS07805	0.30	-1.1
1,763,045	+		DDA3937_RS07805	0.30	-0.2
1,763,046	-		DDA3937_RS07805	0.30	-0.3
1,763,046	-		DDA3937_RS07805	0.30	+0.4
1,763,193	+		DDA3937_RS07805	0.46	+0.6
1,763,194	-		DDA3937_RS07805	0.46	+2.7
1,763,231	+		DDA3937_RS07805	0.50	-0.9
1,763,232	-		DDA3937_RS07805	0.50	-0.9
1,763,255	+		DDA3937_RS07805	0.52	+0.9
1,763,256	-		DDA3937_RS07805	0.52	-0.0
1,763,256	-		DDA3937_RS07805	0.52	-0.9
1,763,353	+		DDA3937_RS07805	0.63	-1.4
1,763,354	-		DDA3937_RS07805	0.63	+0.5
1,763,380	+		DDA3937_RS07805	0.66	-0.8
1,763,399	+		DDA3937_RS07805	0.68	-0.9
1,763,399	+		DDA3937_RS07805	0.68	-0.3
1,763,400	-		DDA3937_RS07805	0.68	-0.5