Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06980

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,561,531	+				+1.2
1,561,532	-				-0.4
1,561,581	+				+1.9
1,561,753	-		DDA3937_RS06975	0.18	-1.6
1,561,794	+		DDA3937_RS06975	0.23	+2.4
1,561,795	-		DDA3937_RS06975	0.23	+0.4
1,561,795	-		DDA3937_RS06975	0.23	+2.7
1,561,799	+		DDA3937_RS06975	0.23	-2.2
1,561,799	+				+2.9
1,561,799	+		DDA3937_RS06975	0.23	-1.1
1,561,799	+		DDA3937_RS06975	0.23	+1.1
1,561,800	-		DDA3937_RS06975	0.23	-2.0
1,561,800	-		DDA3937_RS06975	0.23	-1.1
1,561,873	+		DDA3937_RS06975	0.31	+0.5
1,561,873	+		DDA3937_RS06975	0.31	-2.0
1,561,874	-		DDA3937_RS06975	0.31	-0.4
1,561,899	+		DDA3937_RS06975	0.34	+0.1
1,561,899	+		DDA3937_RS06975	0.34	-0.2
1,561,930	+		DDA3937_RS06975	0.37	-0.7
1,561,930	+		DDA3937_RS06975	0.37	-2.2
1,561,931	-		DDA3937_RS06975	0.37	-1.3
1,562,023	+		DDA3937_RS06975	0.47	-0.6
1,562,058	+		DDA3937_RS06975	0.51	-1.2
1,562,058	+		DDA3937_RS06975	0.51	-1.4
1,562,072	+		DDA3937_RS06975	0.53	-2.0
1,562,226	+		DDA3937_RS06975	0.70	+1.0
1,562,226	+		DDA3937_RS06975	0.70	-0.2
1,562,226	+		DDA3937_RS06975	0.70	+1.7
1,562,226	+		DDA3937_RS06975	0.70	+0.1
1,562,226	+		DDA3937_RS06975	0.70	-0.3
1,562,226	+		DDA3937_RS06975	0.70	-2.0
1,562,227	-		DDA3937_RS06975	0.70	-1.0
1,562,227	-		DDA3937_RS06975	0.70	-0.8
1,562,333	+				+0.9
1,562,333	+		DDA3937_RS06975	0.81	-0.3
1,562,334	-		DDA3937_RS06975	0.81	-0.3
1,562,359	-		DDA3937_RS06975	0.84	+0.5
1,562,436	+				-0.4
1,562,436	+				+0.6
1,562,436	+				-0.8
1,562,436	+				+0.5
1,562,437	-				-1.7
1,562,469	+				-1.0
1,562,469	+				-0.9
1,562,469	+				-0.3
1,562,469	+				+0.6
1,562,469	+				-0.5
1,562,469	+				-0.4
1,562,470	-				-0.0
1,562,470	-				-0.4
1,562,470	-				+1.5
1,562,470	-				-1.5
1,562,471	+				-1.1
1,562,471	+				-0.1
1,562,472	-				-1.3
1,562,472	-				-0.0
1,562,472	-				-1.7
1,562,472	-				-1.6
1,562,644	+				-0.4
1,562,650	+				-1.4
1,562,650	+				+2.9
1,562,650	+				-0.5
1,562,650	+				-1.4
1,562,650	+				-1.7
1,562,651	-				-1.6
1,562,651	-				-0.1
1,562,651	-				+0.2
1,562,651	-				-2.8
1,562,651	-				+1.2
1,562,651	-				-2.5
1,562,697	+				-1.0
1,562,698	-				+0.3
1,562,840	+				+1.7
1,562,840	+				-0.7
1,562,841	-				-2.4
1,562,843	+				-0.0
1,562,844	-				+0.3
1,562,861	-				+1.1
1,562,881	+				-1.2
1,562,926	+				-0.4
1,562,926	+				-0.4
1,562,927	-				-1.3
1,562,927	-				-1.4
1,562,983	-				-1.5
1,562,983	-				-3.0
1,563,013	+		DDA3937_RS06980	0.11	-1.4
1,563,014	-		DDA3937_RS06980	0.11	-0.8
1,563,014	-		DDA3937_RS06980	0.11	-3.4
1,563,066	-		DDA3937_RS06980	0.12	-0.7
1,563,093	+		DDA3937_RS06980	0.12	-0.6
1,563,093	+		DDA3937_RS06980	0.12	-2.6
1,563,094	-		DDA3937_RS06980	0.12	-1.6
1,563,484	-		DDA3937_RS06980	0.21	+0.6
1,563,484	-		DDA3937_RS06980	0.21	-1.8
1,563,491	+		DDA3937_RS06980	0.21	+0.3
1,563,491	+		DDA3937_RS06980	0.21	-0.6
1,563,622	+		DDA3937_RS06980	0.24	-1.3
1,563,622	+		DDA3937_RS06980	0.24	+1.4
1,563,622	+		DDA3937_RS06980	0.24	+0.1
1,563,622	+		DDA3937_RS06980	0.24	-2.2
1,563,622	+		DDA3937_RS06980	0.24	+0.9
1,563,623	-		DDA3937_RS06980	0.24	+0.9
1,563,623	-		DDA3937_RS06980	0.24	+2.1
1,563,640	+		DDA3937_RS06980	0.24	-0.2
1,563,641	-		DDA3937_RS06980	0.24	-1.4
1,563,900	+		DDA3937_RS06980	0.30	-0.7
1,563,901	-				-0.4
1,563,901	-		DDA3937_RS06980	0.30	+0.1
1,563,901	-		DDA3937_RS06980	0.30	-0.4
1,563,903	+		DDA3937_RS06980	0.30	-2.6
1,563,903	+		DDA3937_RS06980	0.30	-1.4
1,563,903	+		DDA3937_RS06980	0.30	+0.9
1,563,904	-		DDA3937_RS06980	0.30	-2.1
1,563,982	-		DDA3937_RS06980	0.32	+0.4
1,564,025	-		DDA3937_RS06980	0.33	-1.8
1,564,090	+		DDA3937_RS06980	0.34	-2.2
1,564,091	-		DDA3937_RS06980	0.34	-1.4
1,564,124	+		DDA3937_RS06980	0.35	-0.1
1,564,460	+		DDA3937_RS06980	0.42	-1.3
1,564,461	-		DDA3937_RS06980	0.42	-1.3
1,564,538	-		DDA3937_RS06980	0.44	-1.2
1,564,538	-		DDA3937_RS06980	0.44	-0.4
1,564,543	+		DDA3937_RS06980	0.44	+0.9
1,564,543	+		DDA3937_RS06980	0.44	-1.0
1,564,544	-		DDA3937_RS06980	0.44	-2.2
1,564,544	-		DDA3937_RS06980	0.44	+0.2
1,564,544	-		DDA3937_RS06980	0.44	+0.3
1,564,544	-		DDA3937_RS06980	0.44	-1.1
1,564,544	-		DDA3937_RS06980	0.44	-0.8
1,564,590	+		DDA3937_RS06980	0.45	-2.4
1,564,600	+		DDA3937_RS06980	0.45	-1.1
1,564,606	+		DDA3937_RS06980	0.45	-0.4
1,564,607	-		DDA3937_RS06980	0.45	-0.6
1,564,669	+		DDA3937_RS06980	0.47	+1.0
1,564,792	+		DDA3937_RS06980	0.49	+0.7
1,564,792	+		DDA3937_RS06980	0.49	-0.2
1,564,792	+		DDA3937_RS06980	0.49	+1.0
1,564,792	+		DDA3937_RS06980	0.49	-2.0
1,564,793	-		DDA3937_RS06980	0.49	-0.2
1,564,793	-		DDA3937_RS06980	0.49	-0.1
1,564,809	+		DDA3937_RS06980	0.50	-2.2
1,564,809	+		DDA3937_RS06980	0.50	-1.5
1,564,809	+		DDA3937_RS06980	0.50	-1.1
1,564,809	+		DDA3937_RS06980	0.50	-0.4
1,564,810	-		DDA3937_RS06980	0.50	-0.4
1,564,815	+		DDA3937_RS06980	0.50	+0.9
1,564,815	+		DDA3937_RS06980	0.50	-2.9
1,564,970	+		DDA3937_RS06980	0.53	-1.4
1,564,970	+				+1.9
1,564,970	+		DDA3937_RS06980	0.53	+0.5
1,564,971	-		DDA3937_RS06980	0.53	-0.1
1,564,985	-		DDA3937_RS06980	0.53	-0.7
1,565,011	+		DDA3937_RS06980	0.54	-0.3
1,565,011	+		DDA3937_RS06980	0.54	-1.7
1,565,011	+		DDA3937_RS06980	0.54	-0.4
1,565,012	-		DDA3937_RS06980	0.54	+1.6
1,565,012	-		DDA3937_RS06980	0.54	-1.1
1,565,013	+		DDA3937_RS06980	0.54	-1.6
1,565,110	+		DDA3937_RS06980	0.56	-2.0
1,565,110	+		DDA3937_RS06980	0.56	-2.3
1,565,110	+		DDA3937_RS06980	0.56	+2.7
1,565,110	+		DDA3937_RS06980	0.56	+0.4
1,565,111	-		DDA3937_RS06980	0.56	+1.8
1,565,111	-		DDA3937_RS06980	0.56	+1.0
1,565,111	-		DDA3937_RS06980	0.56	-0.8
1,565,111	-		DDA3937_RS06980	0.56	-0.8
1,565,112	+		DDA3937_RS06980	0.56	+0.3
1,565,112	+		DDA3937_RS06980	0.56	-0.5
1,565,112	+		DDA3937_RS06980	0.56	-2.2
1,565,113	-		DDA3937_RS06980	0.56	+1.9
1,565,167	+		DDA3937_RS06980	0.57	-3.8
1,565,173	+		DDA3937_RS06980	0.57	-1.2
1,565,173	+		DDA3937_RS06980	0.57	+0.9
1,565,173	+		DDA3937_RS06980	0.57	-0.9
1,565,173	+		DDA3937_RS06980	0.57	-0.4
1,565,173	+		DDA3937_RS06980	0.57	+0.2
1,565,236	+		DDA3937_RS06980	0.59	-0.8
1,565,237	-		DDA3937_RS06980	0.59	+0.0
1,565,344	+		DDA3937_RS06980	0.61	-0.9
1,565,344	+		DDA3937_RS06980	0.61	-1.3
1,565,345	-		DDA3937_RS06980	0.61	-1.6
1,565,345	-		DDA3937_RS06980	0.61	-1.1
1,565,345	-				+0.3
1,565,345	-		DDA3937_RS06980	0.61	-0.9
1,565,345	-		DDA3937_RS06980	0.61	+1.1
1,565,426	-		DDA3937_RS06980	0.63	-0.3
1,565,426	-		DDA3937_RS06980	0.63	-0.5
1,565,451	+		DDA3937_RS06980	0.64	+0.0
1,565,500	+		DDA3937_RS06980	0.65	+1.8
1,565,500	+		DDA3937_RS06980	0.65	-0.6
1,565,500	+		DDA3937_RS06980	0.65	-1.5
1,565,500	+		DDA3937_RS06980	0.65	-0.4
1,565,500	+		DDA3937_RS06980	0.65	-1.1
1,565,501	-		DDA3937_RS06980	0.65	+0.7
1,565,501	-		DDA3937_RS06980	0.65	-1.0
1,565,501	-		DDA3937_RS06980	0.65	-0.6
1,565,501	-		DDA3937_RS06980	0.65	-2.8
1,565,501	-		DDA3937_RS06980	0.65	-0.7
1,565,501	-		DDA3937_RS06980	0.65	-1.8
1,565,583	-		DDA3937_RS06980	0.66	+0.3
1,565,599	+		DDA3937_RS06980	0.67	+3.3
1,565,600	-		DDA3937_RS06980	0.67	-0.1
1,565,614	+		DDA3937_RS06980	0.67	-0.6
1,565,626	+		DDA3937_RS06980	0.67	-0.2
1,565,655	+		DDA3937_RS06980	0.68	-0.5
1,565,656	-		DDA3937_RS06980	0.68	+0.6
1,565,689	+		DDA3937_RS06980	0.69	+0.5
1,565,717	+		DDA3937_RS06980	0.69	-0.5
1,565,763	+		DDA3937_RS06980	0.70	+0.6
1,565,764	-		DDA3937_RS06980	0.70	-2.3
1,565,764	-		DDA3937_RS06980	0.70	+0.3
1,565,767	+		DDA3937_RS06980	0.70	+1.3
1,565,767	+		DDA3937_RS06980	0.70	-1.3
1,565,767	+		DDA3937_RS06980	0.70	-0.4
1,565,767	+		DDA3937_RS06980	0.70	-1.4
1,565,767	+		DDA3937_RS06980	0.70	-1.5
1,565,767	+		DDA3937_RS06980	0.70	-3.6
1,565,767	+		DDA3937_RS06980	0.70	-1.1
1,565,768	-				+0.3
1,565,768	-		DDA3937_RS06980	0.70	-0.1
1,565,768	-		DDA3937_RS06980	0.70	-1.9
1,565,768	-		DDA3937_RS06980	0.70	-0.6
1,565,768	-		DDA3937_RS06980	0.70	+0.9
1,565,768	-		DDA3937_RS06980	0.70	-0.0
1,565,821	+		DDA3937_RS06980	0.72	-0.3
1,565,821	+		DDA3937_RS06980	0.72	-1.9
1,565,828	-		DDA3937_RS06980	0.72	+0.1
1,565,877	-		DDA3937_RS06980	0.73	+0.8
1,566,143	-		DDA3937_RS06980	0.79	-1.6
1,566,788	-				+0.4
1,567,039	+				-0.4
1,567,040	-				-1.1
1,567,090	+				+0.6
1,567,090	+				+0.1
1,567,090	+				-0.6
1,567,098	+				+0.0
1,567,226	+				+1.9
1,567,294	+				+0.1
1,567,295	-				-1.7
1,567,417	-				-0.7
1,567,442	+				+0.3
1,567,654	-		DDA3937_RS22035	0.42	-0.1
1,567,669	+		DDA3937_RS22035	0.46	+1.7
1,567,694	-		DDA3937_RS22035	0.52	+1.2
1,567,724	+		DDA3937_RS22035	0.59	+0.3
1,567,829	-		DDA3937_RS22035	0.84	+0.7
1,567,848	+		DDA3937_RS22035	0.88	+1.7
1,567,876	+				-1.3
1,567,891	+				-0.9
1,568,034	-		DDA3937_RS06985	0.41	+0.1
1,568,034	-		DDA3937_RS06985	0.41	-1.3