Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06370

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,421,257	+		DDA3937_RS06360	0.78	+0.7
1,421,331	+				-0.1
1,421,332	-				-0.9
1,421,332	-				+0.0
1,421,336	+				+1.0
1,421,345	-				-1.0
1,421,384	+				+1.2
1,421,424	-				-3.1
1,421,443	+				-0.7
1,421,443	+				+0.9
1,421,444	-				-0.9
1,421,444	-				-0.9
1,421,444	-				-0.7
1,421,444	-				-0.4
1,421,529	+		DDA3937_RS06365	0.14	+0.1
1,421,529	+		DDA3937_RS06365	0.14	+1.7
1,421,529	+		DDA3937_RS06365	0.14	-0.4
1,421,529	+		DDA3937_RS06365	0.14	+0.7
1,421,529	+		DDA3937_RS06365	0.14	-1.0
1,421,530	-		DDA3937_RS06365	0.14	+0.3
1,421,530	-		DDA3937_RS06365	0.14	-3.1
1,421,530	-		DDA3937_RS06365	0.14	-0.1
1,421,530	-		DDA3937_RS06365	0.14	-1.9
1,421,530	-		DDA3937_RS06365	0.14	-0.5
1,421,530	-		DDA3937_RS06365	0.14	-2.0
1,421,533	+		DDA3937_RS06365	0.14	-2.0
1,421,541	+		DDA3937_RS06365	0.15	-0.4
1,421,541	+		DDA3937_RS06365	0.15	+2.1
1,421,541	+		DDA3937_RS06365	0.15	-0.1
1,421,542	-		DDA3937_RS06365	0.16	-1.3
1,421,542	-		DDA3937_RS06365	0.16	+1.1
1,421,725	+		DDA3937_RS06365	0.42	-0.7
1,421,726	-		DDA3937_RS06365	0.42	+1.1
1,421,821	-		DDA3937_RS06365	0.56	-1.2
1,421,821	-		DDA3937_RS06365	0.56	-0.6
1,421,821	-		DDA3937_RS06365	0.56	-2.8
1,421,821	-		DDA3937_RS06365	0.56	+0.9
1,421,821	-		DDA3937_RS06365	0.56	+1.5
1,421,926	-		DDA3937_RS06365	0.71	-2.0
1,421,926	-		DDA3937_RS06365	0.71	+0.7
1,422,092	+				+0.3
1,422,092	+				-0.1
1,422,093	-				-1.6
1,422,093	-				-0.1
1,422,174	+				+0.5
1,422,174	+				-0.3
1,422,174	+				-2.3
1,422,174	+				+0.3
1,422,175	-				-0.7
1,422,446	+		DDA3937_RS06370	0.12	+1.9
1,422,446	+		DDA3937_RS06370	0.12	-2.3
1,422,446	+		DDA3937_RS06370	0.12	-0.1
1,422,507	-		DDA3937_RS06370	0.14	+0.1
1,422,507	-		DDA3937_RS06370	0.14	-0.1
1,422,507	-		DDA3937_RS06370	0.14	-0.3
1,422,507	-		DDA3937_RS06370	0.14	-0.7
1,422,535	+		DDA3937_RS06370	0.15	+0.4
1,422,535	+		DDA3937_RS06370	0.15	+0.1
1,422,543	+		DDA3937_RS06370	0.15	-0.6
1,422,543	+		DDA3937_RS06370	0.15	-2.4
1,422,544	-		DDA3937_RS06370	0.15	-0.4
1,422,544	-		DDA3937_RS06370	0.15	-1.9
1,422,544	-		DDA3937_RS06370	0.15	+1.7
1,422,544	-		DDA3937_RS06370	0.15	+0.1
1,422,546	+				+0.9
1,422,546	+		DDA3937_RS06370	0.16	+0.3
1,422,547	-		DDA3937_RS06370	0.16	+2.3
1,422,547	-		DDA3937_RS06370	0.16	-4.3
1,422,547	-		DDA3937_RS06370	0.16	-0.2
1,422,547	-		DDA3937_RS06370	0.16	+1.5
1,422,547	-		DDA3937_RS06370	0.16	-0.1
1,422,547	-		DDA3937_RS06370	0.16	-0.7
1,422,547	-		DDA3937_RS06370	0.16	+1.5
1,422,547	-		DDA3937_RS06370	0.16	-0.9
1,422,751	-		DDA3937_RS06370	0.23	-1.4
1,422,751	-		DDA3937_RS06370	0.23	-0.8
1,422,835	+		DDA3937_RS06370	0.26	-0.2
1,422,835	+		DDA3937_RS06370	0.26	-2.1
1,422,836	-		DDA3937_RS06370	0.26	-1.4
1,422,879	+		DDA3937_RS06370	0.28	+1.3
1,422,879	+		DDA3937_RS06370	0.28	-0.4
1,422,879	+		DDA3937_RS06370	0.28	+2.0
1,423,035	-		DDA3937_RS06370	0.33	+0.5
1,423,040	-		DDA3937_RS06370	0.34	-0.4
1,423,040	-		DDA3937_RS06370	0.34	-1.8
1,423,089	-		DDA3937_RS06370	0.35	+2.4
1,423,292	+		DDA3937_RS06370	0.43	+1.6
1,423,341	-		DDA3937_RS06370	0.45	-0.1
1,423,409	+		DDA3937_RS06370	0.47	-1.4
1,423,409	+		DDA3937_RS06370	0.47	+1.9
1,423,410	-		DDA3937_RS06370	0.47	+0.3
1,423,512	-		DDA3937_RS06370	0.51	-0.1
1,423,544	+		DDA3937_RS06370	0.52	-2.8
1,423,545	-		DDA3937_RS06370	0.52	-1.0
1,423,545	-		DDA3937_RS06370	0.52	-0.7
1,423,545	-		DDA3937_RS06370	0.52	+0.4
1,423,545	-		DDA3937_RS06370	0.52	-0.6
1,423,545	-		DDA3937_RS06370	0.52	-3.0
1,423,606	-		DDA3937_RS06370	0.54	-2.2
1,423,668	+		DDA3937_RS06370	0.57	+0.6
1,423,843	-		DDA3937_RS06370	0.63	+1.4
1,423,843	-		DDA3937_RS06370	0.63	-0.2
1,423,856	+		DDA3937_RS06370	0.64	-0.1
1,423,864	+		DDA3937_RS06370	0.64	-0.7
1,423,995	-		DDA3937_RS06370	0.69	+0.7
1,423,995	-		DDA3937_RS06370	0.69	+0.7
1,424,258	+		DDA3937_RS06370	0.78	-0.7
1,424,258	+		DDA3937_RS06370	0.78	+0.6
1,424,258	+		DDA3937_RS06370	0.78	-1.6
1,424,258	+		DDA3937_RS06370	0.78	-1.9
1,424,258	+		DDA3937_RS06370	0.78	+1.8
1,424,464	+		DDA3937_RS06370	0.86	-1.1
1,424,464	+		DDA3937_RS06370	0.86	-2.7
1,424,464	+		DDA3937_RS06370	0.86	-2.1
1,424,464	+		DDA3937_RS06370	0.86	+1.9
1,424,465	-		DDA3937_RS06370	0.86	-2.0
1,424,465	-		DDA3937_RS06370	0.86	+0.3
1,424,592	-				+1.6
1,424,733	-				-2.2
1,424,733	-				+0.9
1,424,733	-				-1.8
1,424,733	-				+1.1
1,424,733	-				-1.6
1,424,918	-				-1.3
1,424,945	+				-1.3
1,424,946	-				-0.2
1,424,946	-				+0.0
1,424,946	-				-2.0
1,424,995	+		DDA3937_RS06375	0.16	-1.3
1,424,996	-		DDA3937_RS06375	0.16	-0.1
1,425,017	+		DDA3937_RS06375	0.20	-1.6
1,425,017	+		DDA3937_RS06375	0.20	+0.4
1,425,017	+		DDA3937_RS06375	0.20	+0.9
1,425,018	-		DDA3937_RS06375	0.20	-0.0
1,425,066	+		DDA3937_RS06375	0.28	-1.4
1,425,249	+		DDA3937_RS06375	0.60	-0.4
1,425,250	-		DDA3937_RS06375	0.60	+0.8
1,425,289	-		DDA3937_RS06375	0.67	+4.8
1,425,348	+		DDA3937_RS06375	0.77	-2.8
1,425,446	+				+0.3
1,425,447	-				-0.6
1,425,447	-				-3.0
1,425,449	+				+0.3
1,425,450	-				-2.7
1,425,471	+				-0.7
1,425,471	+				-1.0
1,425,471	+				-0.4
1,425,471	+				-0.8
1,425,471	+				-2.0
1,425,471	+				-2.4
1,425,472	-				-0.4
1,425,472	-				+0.6
1,425,481	+				+0.0
1,425,481	+				-1.9
1,425,481	+				+0.6
1,425,482	-				-3.3
1,425,482	-				-1.1
1,425,482	-				-0.3
1,425,482	-				+0.7
1,425,485	+				+0.8
1,425,486	-				+0.5
1,425,486	-				+0.2
1,425,486	-				-2.6
1,425,486	-				-0.1
1,425,486	-				-0.1
1,425,587	-				-0.1
1,425,619	+				+0.4
1,425,619	+				-1.4
1,425,619	+				-2.3
1,425,619	+				-1.4
1,425,619	+				+0.3
1,425,620	-				-0.2
1,425,620	-				-0.1
1,425,621	+				-0.7
1,425,621	+				+0.3
1,425,621	+				+0.0
1,425,621	+				-1.6
1,425,622	-				+0.9
1,425,622	-				-1.8
1,425,622	-				-0.7
1,425,622	-				-0.1
1,425,622	-				-1.1
1,425,661	+				-0.4
1,425,662	-				-1.1
1,425,747	+		DDA3937_RS06380	0.12	-1.8
1,425,747	+		DDA3937_RS06380	0.12	-0.6
1,425,747	+		DDA3937_RS06380	0.12	-1.0
1,425,748	-		DDA3937_RS06380	0.12	-0.7
1,425,783	+		DDA3937_RS06380	0.14	+0.1
1,425,784	-		DDA3937_RS06380	0.14	-2.4
1,425,806	-		DDA3937_RS06380	0.15	-1.6
1,425,847	+		DDA3937_RS06380	0.17	-1.9