Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05560

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,240,987	-		DDA3937_RS05555	0.10	-1.3
1,241,018	-		DDA3937_RS05555	0.14	-0.6
1,241,029	+		DDA3937_RS05555	0.15	-1.3
1,241,030	-		DDA3937_RS05555	0.15	-2.6
1,241,030	-		DDA3937_RS05555	0.15	-0.1
1,241,117	-		DDA3937_RS05555	0.24	+0.9
1,241,117	-		DDA3937_RS05555	0.24	-2.2
1,241,117	-		DDA3937_RS05555	0.24	-2.9
1,241,141	+		DDA3937_RS05555	0.27	+0.1
1,241,142	-		DDA3937_RS05555	0.27	-0.1
1,241,142	-		DDA3937_RS05555	0.27	-0.9
1,241,142	-		DDA3937_RS05555	0.27	-0.4
1,241,297	+		DDA3937_RS05555	0.44	-0.1
1,241,553	+		DDA3937_RS05555	0.72	-2.7
1,241,554	-		DDA3937_RS05555	0.72	+1.4
1,241,602	-		DDA3937_RS05555	0.77	-0.8
1,241,655	+		DDA3937_RS05555	0.83	-1.6
1,241,655	+		DDA3937_RS05555	0.83	-0.7
1,241,655	+		DDA3937_RS05555	0.83	-2.4
1,241,655	+		DDA3937_RS05555	0.83	+0.5
1,241,656	-		DDA3937_RS05555	0.83	+1.0
1,241,660	+		DDA3937_RS05555	0.83	-2.0
1,241,661	-		DDA3937_RS05555	0.83	-1.2
1,241,661	-		DDA3937_RS05555	0.83	-3.1
1,241,661	-		DDA3937_RS05555	0.83	-1.4
1,241,661	-		DDA3937_RS05555	0.83	-1.2
1,241,667	-		DDA3937_RS05555	0.84	-0.7
1,241,667	-		DDA3937_RS05555	0.84	-0.9
1,241,667	-		DDA3937_RS05555	0.84	-0.9
1,241,691	-		DDA3937_RS05555	0.87	-2.4
1,241,725	-				+2.5
1,241,736	+				+0.9
1,241,736	+				-2.6
1,241,736	+				-0.7
1,241,736	+				-2.1
1,241,737	-				+1.3
1,241,737	-				-2.1
1,241,737	-				-0.4
1,241,737	-				-1.9
1,241,737	-				-1.9
1,241,737	-				-1.1
1,241,861	-				-0.1
1,241,861	-				-1.1
1,241,861	-				+0.2
1,241,861	-				-1.0
1,241,865	+				-0.3
1,241,866	-				-0.1
1,241,866	-				+0.1
1,241,866	-				-1.6
1,241,866	-				-1.9
1,241,870	+				-1.9
1,241,870	+				+0.8
1,241,870	+				-0.1
1,241,870	+				+1.6
1,241,870	+				-1.7
1,241,870	+				+0.5
1,241,871	-				+2.9
1,241,871	-				+0.3
1,241,933	+				+0.2
1,241,966	+				-2.0
1,241,966	+				-0.7
1,241,966	+				-0.1
1,241,967	-				-1.1
1,241,967	-				-2.0
1,241,967	-				-1.0
1,241,967	-				-0.7
1,241,986	-				-0.4
1,242,084	+		DDA3937_RS05560	0.20	-1.6
1,242,085	-		DDA3937_RS05560	0.20	-0.4
1,242,085	-		DDA3937_RS05560	0.20	-1.7
1,242,253	-		DDA3937_RS05560	0.54	+0.3
1,242,518	+				-3.1
1,242,520	+				-0.4
1,242,520	+				-1.9
1,242,582	+				-1.6
1,242,617	+				-0.8
1,242,672	+				+0.9
1,242,673	-				-1.4
1,242,673	-				-0.9
1,242,673	-				+0.9
1,242,686	+				-1.7
1,242,686	+				+0.8
1,242,687	-				+0.8
1,242,687	-				+0.1
1,242,701	-				-1.9
1,242,738	-				-1.3
1,242,752	-				-2.0
1,242,752	-				+0.3
1,242,773	+				-1.4
1,242,773	+				+1.6
1,242,773	+				-0.4
1,242,774	-				-1.3
1,242,774	-				-0.8
1,242,774	-				+0.6
1,242,854	+				+0.5
1,242,893	+				+0.9
1,242,893	+				-1.3
1,242,893	+				-1.3
1,242,893	+				+1.9
1,242,893	+				-1.1
1,242,894	-				-1.8
1,242,900	-				-0.4
1,242,923	+				-0.4
1,242,923	+				+0.2
1,242,923	+				-0.7
1,242,923	+				-1.1
1,242,924	-				-1.7
1,242,964	+		DDA3937_RS05565	0.11	+0.7
1,242,964	+		DDA3937_RS05565	0.11	+0.2
1,242,965	-		DDA3937_RS05565	0.11	-0.1
1,243,013	+		DDA3937_RS05565	0.15	-1.4
1,243,013	+		DDA3937_RS05565	0.15	+1.3
1,243,013	+		DDA3937_RS05565	0.15	-0.7
1,243,013	+		DDA3937_RS05565	0.15	-2.1
1,243,014	-		DDA3937_RS05565	0.15	-0.5
1,243,014	-		DDA3937_RS05565	0.15	-0.5
1,243,018	+		DDA3937_RS05565	0.15	+1.5
1,243,019	-		DDA3937_RS05565	0.15	-0.3
1,243,055	+		DDA3937_RS05565	0.18	-0.7
1,243,098	-		DDA3937_RS05565	0.22	-0.9
1,243,136	-		DDA3937_RS05565	0.25	+2.2
1,243,168	-		DDA3937_RS05565	0.28	+0.9
1,243,168	-		DDA3937_RS05565	0.28	-2.3
1,243,175	+		DDA3937_RS05565	0.28	+0.4
1,243,188	+		DDA3937_RS05565	0.29	+2.9
1,243,251	+		DDA3937_RS05565	0.35	+0.8
1,243,251	+		DDA3937_RS05565	0.35	-1.9
1,243,251	+		DDA3937_RS05565	0.35	+0.7
1,243,251	+				+0.9
1,243,251	+		DDA3937_RS05565	0.35	-0.1
1,243,251	+		DDA3937_RS05565	0.35	-1.1
1,243,252	-		DDA3937_RS05565	0.35	-0.9
1,243,252	-		DDA3937_RS05565	0.35	+0.3
1,243,252	-		DDA3937_RS05565	0.35	-1.7
1,243,252	-		DDA3937_RS05565	0.35	+0.2
1,243,265	+		DDA3937_RS05565	0.36	-0.5
1,243,265	+		DDA3937_RS05565	0.36	-0.9
1,243,282	+		DDA3937_RS05565	0.37	+0.8
1,243,282	+		DDA3937_RS05565	0.37	+0.8
1,243,282	+		DDA3937_RS05565	0.37	-1.0
1,243,283	-		DDA3937_RS05565	0.37	-0.1
1,243,344	+		DDA3937_RS05565	0.42	-1.6
1,243,344	+		DDA3937_RS05565	0.42	-3.6
1,243,345	-		DDA3937_RS05565	0.42	-1.9
1,243,350	+		DDA3937_RS05565	0.43	-1.8
1,243,350	+		DDA3937_RS05565	0.43	+0.3
1,243,351	-		DDA3937_RS05565	0.43	+0.2
1,243,424	+		DDA3937_RS05565	0.49	-1.3
1,243,424	+		DDA3937_RS05565	0.49	+0.1
1,243,431	+		DDA3937_RS05565	0.50	-2.3
1,243,431	+		DDA3937_RS05565	0.50	-0.1
1,243,431	+		DDA3937_RS05565	0.50	+1.9
1,243,431	+		DDA3937_RS05565	0.50	-1.4
1,243,431	+		DDA3937_RS05565	0.50	-1.3
1,243,431	+		DDA3937_RS05565	0.50	-0.9
1,243,431	+		DDA3937_RS05565	0.50	+0.7
1,243,431	+		DDA3937_RS05565	0.50	-0.2
1,243,432	-		DDA3937_RS05565	0.50	-0.9
1,243,432	-		DDA3937_RS05565	0.50	-0.8
1,243,432	-		DDA3937_RS05565	0.50	-0.9
1,243,432	-		DDA3937_RS05565	0.50	-2.0
1,243,432	-		DDA3937_RS05565	0.50	+0.3