Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04545

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,004,233	+		DDA3937_RS04540	0.68	+0.2
1,004,254	+		DDA3937_RS04540	0.69	-0.5
1,004,254	+		DDA3937_RS04540	0.69	+1.0
1,004,254	+		DDA3937_RS04540	0.69	+1.7
1,004,254	+		DDA3937_RS04540	0.69	+0.9
1,004,254	+		DDA3937_RS04540	0.69	+0.7
1,004,255	-		DDA3937_RS04540	0.69	-2.4
1,004,255	-		DDA3937_RS04540	0.69	+1.6
1,004,302	+		DDA3937_RS04540	0.72	+2.4
1,004,302	+		DDA3937_RS04540	0.72	+1.1
1,004,302	+		DDA3937_RS04540	0.72	-1.2
1,004,302	+		DDA3937_RS04540	0.72	+3.1
1,004,302	+		DDA3937_RS04540	0.72	-0.6
1,004,302	+		DDA3937_RS04540	0.72	+0.4
1,004,302	+		DDA3937_RS04540	0.72	+1.9
1,004,302	+		DDA3937_RS04540	0.72	+1.2
1,004,302	+		DDA3937_RS04540	0.72	+0.3
1,004,302	+		DDA3937_RS04540	0.72	+0.9
1,004,302	+		DDA3937_RS04540	0.72	+1.0
1,004,302	+		DDA3937_RS04540	0.72	+1.1
1,004,302	+		DDA3937_RS04540	0.72	-1.9
1,004,302	+		DDA3937_RS04540	0.72	+2.9
1,004,303	-		DDA3937_RS04540	0.72	+0.7
1,004,303	-		DDA3937_RS04540	0.72	-0.4
1,004,303	-		DDA3937_RS04540	0.72	+1.1
1,004,303	-		DDA3937_RS04540	0.72	+1.8
1,004,303	-		DDA3937_RS04540	0.72	+2.5
1,004,303	-		DDA3937_RS04540	0.72	+2.1
1,004,303	-		DDA3937_RS04540	0.72	+1.2
1,004,303	-		DDA3937_RS04540	0.72	-0.2
1,004,329	+		DDA3937_RS04540	0.73	+1.1
1,004,330	-		DDA3937_RS04540	0.73	+0.1
1,004,359	+		DDA3937_RS04540	0.75	+1.7
1,004,359	+		DDA3937_RS04540	0.75	+0.2
1,004,359	+		DDA3937_RS04540	0.75	+1.2
1,004,359	+		DDA3937_RS04540	0.75	+0.9
1,004,359	+		DDA3937_RS04540	0.75	+2.3
1,004,359	+		DDA3937_RS04540	0.75	+0.4
1,004,359	+		DDA3937_RS04540	0.75	-1.7
1,004,360	-		DDA3937_RS04540	0.75	+0.7
1,004,360	-		DDA3937_RS04540	0.75	-2.5
1,004,360	-		DDA3937_RS04540	0.75	+0.7
1,004,360	-		DDA3937_RS04540	0.75	+1.9
1,004,360	-		DDA3937_RS04540	0.75	+0.3
1,004,360	-		DDA3937_RS04540	0.75	+0.1
1,004,457	-		DDA3937_RS04540	0.81	+1.5
1,004,457	-		DDA3937_RS04540	0.81	+0.3
1,004,489	+		DDA3937_RS04540	0.83	+0.7
1,004,489	+		DDA3937_RS04540	0.83	+0.3
1,004,490	-		DDA3937_RS04540	0.83	+1.3
1,004,490	-		DDA3937_RS04540	0.83	+1.3
1,004,490	-		DDA3937_RS04540	0.83	+1.3
1,004,512	+		DDA3937_RS04540	0.85	+1.8
1,004,512	+		DDA3937_RS04540	0.85	+2.0
1,004,512	+		DDA3937_RS04540	0.85	+1.3
1,004,512	+		DDA3937_RS04540	0.85	+1.3
1,004,513	-		DDA3937_RS04540	0.85	+0.8
1,004,513	-		DDA3937_RS04540	0.85	-1.2
1,004,513	-		DDA3937_RS04540	0.85	+1.1
1,004,652	-				-0.3
1,004,746	+				-0.4
1,004,747	-				-2.2
1,004,747	-				+1.8
1,004,756	+				-0.8
1,004,756	+				-2.2
1,004,788	+				-1.0
1,004,789	-				-1.5
1,004,811	+				-2.0
1,004,811	+				-2.4
1,004,812	-				-0.6
1,004,823	-				+0.4
1,004,843	-				-1.9
1,004,899	-				-0.8
1,004,912	+				+0.4
1,004,912	+				+0.8
1,004,912	+				+0.3
1,004,913	-				+0.8
1,004,913	-				-0.3
1,004,963	+				+3.0
1,004,963	+				-2.2
1,004,963	+				+0.4
1,004,963	+				-1.2
1,004,963	+				-2.1
1,004,963	+				+1.0
1,004,963	+				+1.8
1,004,964	-				+1.0
1,004,964	-				-0.4
1,004,964	-				+0.0
1,004,964	-				+1.0
1,004,964	-				-1.0
1,004,964	-				-1.3
1,004,966	+				-0.8
1,004,966	+				+1.0
1,004,966	+				+1.2
1,004,966	+				-0.9
1,004,967	-				-3.5
1,004,967	-				+0.5
1,004,967	-				+0.9
1,004,967	-				+0.0
1,004,967	-				-1.2
1,004,967	-				-2.5
1,004,967	-				-0.3
1,004,967	-				+1.7
1,004,986	+				-0.7
1,005,013	+				-1.0
1,005,039	+				-2.0
1,005,039	+				-1.3
1,005,058	+				-2.5
1,005,059	-				-0.7
1,005,059	-				-0.9
1,005,059	-				-1.2
1,005,059	-				-3.6
1,005,100	+				-1.1
1,005,100	+				+1.3
1,005,100	+				-0.6
1,005,101	-				-2.9
1,005,101	-				+0.2
1,005,101	-				+1.2
1,005,101	-				+0.0
1,005,109	+				-0.6
1,005,118	+				-1.1
1,005,122	+				+2.0
1,005,123	-				-2.9
1,005,123	-				-0.3
1,005,142	+				-0.8
1,005,147	-				+0.4
1,005,161	+				-1.2
1,005,161	+				+1.8
1,005,335	+		DDA3937_RS04545	0.14	+1.3
1,005,336	-		DDA3937_RS04545	0.14	-1.9
1,005,336	-		DDA3937_RS04545	0.14	+0.4
1,005,426	+		DDA3937_RS04545	0.24	-1.0
1,005,480	+		DDA3937_RS04545	0.31	+1.2
1,005,480	+		DDA3937_RS04545	0.31	-0.5
1,005,480	+		DDA3937_RS04545	0.31	-1.4
1,005,480	+		DDA3937_RS04545	0.31	-1.0
1,005,480	+		DDA3937_RS04545	0.31	-0.8
1,005,481	-		DDA3937_RS04545	0.31	-2.2
1,005,481	-		DDA3937_RS04545	0.31	-1.0
1,005,481	-		DDA3937_RS04545	0.31	-2.0
1,005,481	-		DDA3937_RS04545	0.31	+1.7
1,005,481	-		DDA3937_RS04545	0.31	-0.1
1,005,481	-		DDA3937_RS04545	0.31	-2.7
1,005,481	-		DDA3937_RS04545	0.31	+0.4
1,005,568	-				+1.0
1,005,641	+		DDA3937_RS04545	0.49	-0.5
1,005,641	+		DDA3937_RS04545	0.49	+0.4
1,005,641	+		DDA3937_RS04545	0.49	+1.3
1,005,641	+		DDA3937_RS04545	0.49	+0.8
1,005,759	+		DDA3937_RS04545	0.63	+1.0
1,005,759	+		DDA3937_RS04545	0.63	-0.4
1,005,759	+		DDA3937_RS04545	0.63	+0.4
1,005,760	-		DDA3937_RS04545	0.63	-1.5
1,005,760	-		DDA3937_RS04545	0.63	+1.5
1,005,809	+		DDA3937_RS04545	0.69	+1.2
1,005,810	-		DDA3937_RS04545	0.69	-3.0
1,005,815	-		DDA3937_RS04545	0.69	-0.6
1,005,865	+		DDA3937_RS04545	0.75	+1.6
1,005,865	+				+0.4
1,005,865	+		DDA3937_RS04545	0.75	+0.2
1,005,866	-		DDA3937_RS04545	0.75	+0.1
1,005,889	+		DDA3937_RS04545	0.78	-0.2
1,005,889	+		DDA3937_RS04545	0.78	+2.0
1,005,889	+		DDA3937_RS04545	0.78	-0.8
1,005,889	+		DDA3937_RS04545	0.78	-1.5
1,005,890	-		DDA3937_RS04545	0.78	-0.3
1,006,033	+				+1.2
1,006,386	+		DDA3937_RS04550	0.43	-0.7
1,006,386	+		DDA3937_RS04550	0.43	-1.5
1,006,449	-		DDA3937_RS04550	0.56	-1.5
1,006,578	+		DDA3937_RS04550	0.84	+0.0
1,006,578	+		DDA3937_RS04550	0.84	+3.6
1,006,578	+		DDA3937_RS04550	0.84	-0.3
1,006,578	+		DDA3937_RS04550	0.84	+0.9
1,006,579	-		DDA3937_RS04550	0.84	-0.1
1,006,579	-		DDA3937_RS04550	0.84	+0.6
1,006,590	+		DDA3937_RS04550	0.86	+1.1
1,006,591	-		DDA3937_RS04550	0.87	+1.1
1,006,602	+		DDA3937_RS04550	0.89	-1.3
1,006,602	+		DDA3937_RS04550	0.89	+1.0
1,006,602	+		DDA3937_RS04550	0.89	+0.4
1,006,680	+				-0.9
1,006,792	+				-3.7
1,006,792	+				+0.0
1,006,793	-				-0.6
1,006,801	+				+0.0
1,006,812	+				+2.0
1,006,902	+		DDA3937_RS04555	0.22	+1.1