Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04480 and DDA3937_RS04485 are separated by 47 nucleotides DDA3937_RS04485 and DDA3937_RS04490 are separated by 406 nucleotides DDA3937_RS04490 and DDA3937_RS04495 are separated by 162 nucleotides
DDA3937_RS04480: DDA3937_RS04480 - phosphoenolpyruvate-protein phosphotransferase PtsI, at 989,304 to 991,031
_RS04480
DDA3937_RS04485: DDA3937_RS04485 - phosphocarrier protein Hpr, at 991,079 to 991,336
_RS04485
DDA3937_RS04490: DDA3937_RS04490 - cysteine synthase A, at 991,743 to 992,711
_RS04490
DDA3937_RS04495: DDA3937_RS04495 - sulfate transporter CysZ, at 992,874 to 993,644
_RS04495
Position (kb) 991
992
993 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 990.803 kb on + strand, within DDA3937_RS04480 at 990.804 kb on - strand, within DDA3937_RS04480 at 991.015 kb on - strand at 991.015 kb on - strand at 991.032 kb on - strand at 991.038 kb on - strand at 991.038 kb on - strand at 991.038 kb on - strand at 991.038 kb on - strand at 991.043 kb on - strand at 991.062 kb on + strand at 991.231 kb on + strand, within DDA3937_RS04485 at 991.232 kb on - strand, within DDA3937_RS04485 at 991.232 kb on - strand, within DDA3937_RS04485 at 991.319 kb on + strand at 991.319 kb on + strand at 991.320 kb on - strand at 991.320 kb on - strand at 991.361 kb on + strand at 991.380 kb on + strand at 991.380 kb on + strand at 991.381 kb on - strand at 991.387 kb on + strand at 991.388 kb on - strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.393 kb on - strand at 991.393 kb on - strand at 991.393 kb on - strand at 991.393 kb on - strand at 991.393 kb on - strand at 991.393 kb on - strand at 991.393 kb on - strand at 991.393 kb on - strand at 991.396 kb on + strand at 991.396 kb on + strand at 991.396 kb on + strand at 991.396 kb on + strand at 991.396 kb on + strand at 991.396 kb on + strand at 991.396 kb on + strand at 991.397 kb on - strand at 991.397 kb on - strand at 991.401 kb on - strand at 991.406 kb on + strand at 991.407 kb on - strand at 991.561 kb on + strand at 991.567 kb on + strand at 991.567 kb on + strand at 991.567 kb on + strand at 991.567 kb on + strand at 991.568 kb on - strand at 991.568 kb on - strand at 991.590 kb on + strand at 991.621 kb on - strand at 991.627 kb on + strand at 991.653 kb on + strand at 991.654 kb on - strand at 991.654 kb on - strand at 991.654 kb on - strand at 991.654 kb on - strand at 991.658 kb on - strand at 991.717 kb on - strand at 991.744 kb on + strand at 991.745 kb on - strand at 991.745 kb on - strand at 991.745 kb on - strand at 991.790 kb on + strand at 992.149 kb on + strand, within DDA3937_RS04490 at 992.150 kb on - strand, within DDA3937_RS04490 at 992.150 kb on - strand, within DDA3937_RS04490 at 992.150 kb on - strand, within DDA3937_RS04490 at 992.150 kb on - strand, within DDA3937_RS04490 at 992.299 kb on + strand, within DDA3937_RS04490 at 992.453 kb on + strand, within DDA3937_RS04490 at 992.476 kb on + strand, within DDA3937_RS04490 at 992.476 kb on + strand, within DDA3937_RS04490 at 992.477 kb on - strand, within DDA3937_RS04490 at 992.477 kb on - strand, within DDA3937_RS04490 at 992.499 kb on - strand, within DDA3937_RS04490 at 992.699 kb on - strand at 992.705 kb on + strand at 992.705 kb on + strand at 992.711 kb on + strand at 992.722 kb on + strand at 992.725 kb on + strand at 992.725 kb on + strand at 992.726 kb on - strand at 992.726 kb on - strand at 992.760 kb on + strand at 992.760 kb on + strand at 992.760 kb on + strand at 992.761 kb on - strand at 992.804 kb on + strand at 992.834 kb on - strand at 992.841 kb on + strand at 992.841 kb on + strand at 992.842 kb on - strand at 992.842 kb on - strand at 992.843 kb on + strand at 992.843 kb on + strand at 992.843 kb on + strand at 992.844 kb on - strand at 992.844 kb on - strand at 992.844 kb on - strand at 992.850 kb on + strand at 992.850 kb on + strand at 992.850 kb on + strand at 992.850 kb on + strand at 992.850 kb on + strand at 992.850 kb on + strand at 992.850 kb on + strand at 992.966 kb on + strand, within DDA3937_RS04495 at 992.966 kb on + strand, within DDA3937_RS04495 at 992.966 kb on + strand, within DDA3937_RS04495 at 992.967 kb on - strand, within DDA3937_RS04495 at 993.012 kb on + strand, within DDA3937_RS04495 at 993.012 kb on + strand, within DDA3937_RS04495 at 993.013 kb on - strand, within DDA3937_RS04495 at 993.013 kb on - strand, within DDA3937_RS04495 at 993.186 kb on + strand, within DDA3937_RS04495 at 993.193 kb on - strand, within DDA3937_RS04495 at 993.201 kb on + strand, within DDA3937_RS04495 at 993.202 kb on - strand, within DDA3937_RS04495 at 993.205 kb on + strand, within DDA3937_RS04495 at 993.205 kb on + strand, within DDA3937_RS04495 at 993.205 kb on + strand, within DDA3937_RS04495 at 993.206 kb on - strand, within DDA3937_RS04495 at 993.421 kb on + strand, within DDA3937_RS04495 at 993.421 kb on + strand, within DDA3937_RS04495 at 993.524 kb on + strand, within DDA3937_RS04495 at 993.525 kb on - strand, within DDA3937_RS04495 at 993.598 kb on + strand at 993.598 kb on + strand at 993.598 kb on + strand at 993.599 kb on - strand at 993.637 kb on + strand at 993.661 kb on + strand at 993.661 kb on + strand at 993.661 kb on + strand at 993.661 kb on + strand at 993.662 kb on - strand at 993.662 kb on - strand at 993.662 kb on - strand at 993.667 kb on - strand at 993.667 kb on - strand at 993.685 kb on + strand at 993.708 kb on + strand at 993.709 kb on - strand at 993.709 kb on - strand at 993.709 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 990,803 + DDA3937_RS04480 0.87 +2.0 990,804 - DDA3937_RS04480 0.87 +2.0 991,015 - +2.7 991,015 - +1.1 991,032 - +2.1 991,038 - +2.1 991,038 - -0.7 991,038 - -0.3 991,038 - +1.0 991,043 - +0.2 991,062 + -0.3 991,231 + DDA3937_RS04485 0.59 +0.9 991,232 - DDA3937_RS04485 0.59 -0.6 991,232 - DDA3937_RS04485 0.59 -0.6 991,319 + +0.7 991,319 + +2.3 991,320 - +1.6 991,320 - +0.6 991,361 + +2.3 991,380 + +2.9 991,380 + +1.1 991,381 - -1.2 991,387 + +2.0 991,388 - -1.0 991,392 + +2.4 991,392 + +2.3 991,392 + +1.4 991,392 + +2.2 991,392 + +1.2 991,392 + +1.8 991,392 + +1.8 991,392 + +2.2 991,392 + +1.7 991,392 + +0.6 991,392 + +1.3 991,392 + +1.4 991,392 + +1.5 991,392 + +1.8 991,392 + +1.5 991,392 + +1.5 991,392 + +1.7 991,392 + +3.1 991,393 - -0.7 991,393 - -1.3 991,393 - -2.4 991,393 - +1.0 991,393 - -0.3 991,393 - -2.1 991,393 - +2.8 991,393 - -1.4 991,396 + +1.8 991,396 + +2.4 991,396 + +2.0 991,396 + +2.0 991,396 + +2.1 991,396 + +2.3 991,396 + +2.2 991,397 - +0.2 991,397 - +0.3 991,401 - -1.7 991,406 + +0.9 991,407 - -2.3 991,561 + +2.3 991,567 + +0.4 991,567 + +2.8 991,567 + +1.5 991,567 + +0.8 991,568 - +0.4 991,568 - +2.0 991,590 + +2.7 991,621 - -0.6 991,627 + +2.1 991,653 + +1.7 991,654 - -0.7 991,654 - -1.3 991,654 - +1.0 991,654 - +0.4 991,658 - -0.7 991,717 - -0.4 991,744 + -1.3 991,745 - -1.5 991,745 - -1.6 991,745 - -1.2 991,790 + -0.6 992,149 + DDA3937_RS04490 0.42 -1.5 992,150 - DDA3937_RS04490 0.42 -0.0 992,150 - DDA3937_RS04490 0.42 -1.2 992,150 - DDA3937_RS04490 0.42 -1.0 992,150 - DDA3937_RS04490 0.42 +2.6 992,299 + DDA3937_RS04490 0.57 -2.1 992,453 + DDA3937_RS04490 0.73 -1.7 992,476 + DDA3937_RS04490 0.76 -0.3 992,476 + DDA3937_RS04490 0.76 +1.6 992,477 - DDA3937_RS04490 0.76 -1.3 992,477 - DDA3937_RS04490 0.76 -0.3 992,499 - DDA3937_RS04490 0.78 -0.3 992,699 - -1.7 992,705 + +1.0 992,705 + -0.8 992,711 + -0.1 992,722 + -0.0 992,725 + -2.3 992,725 + -0.9 992,726 - -0.6 992,726 - -0.0 992,760 + -1.5 992,760 + -0.3 992,760 + -2.6 992,761 - -1.0 992,804 + -0.7 992,834 - -1.6 992,841 + +1.0 992,841 + -0.0 992,842 - -0.8 992,842 - -3.3 992,843 + -0.2 992,843 + +0.3 992,843 + +0.9 992,844 - +1.0 992,844 - -0.0 992,844 - -0.3 992,850 + +0.4 992,850 + +1.1 992,850 + -2.6 992,850 + -1.1 992,850 + -0.0 992,850 + +1.0 992,850 + +0.7 992,966 + DDA3937_RS04495 0.12 -0.3 992,966 + DDA3937_RS04495 0.12 -1.2 992,966 + DDA3937_RS04495 0.12 -0.0 992,967 - DDA3937_RS04495 0.12 -1.5 993,012 + DDA3937_RS04495 0.18 -1.6 993,012 + DDA3937_RS04495 0.18 +2.6 993,013 - DDA3937_RS04495 0.18 -2.1 993,013 - DDA3937_RS04495 0.18 -1.8 993,186 + DDA3937_RS04495 0.40 -2.0 993,193 - DDA3937_RS04495 0.41 -0.3 993,201 + DDA3937_RS04495 0.42 -0.6 993,202 - DDA3937_RS04495 0.43 -1.7 993,205 + DDA3937_RS04495 0.43 +0.8 993,205 + DDA3937_RS04495 0.43 -1.3 993,205 + DDA3937_RS04495 0.43 +1.0 993,206 - DDA3937_RS04495 0.43 -2.3 993,421 + DDA3937_RS04495 0.71 -0.3 993,421 + DDA3937_RS04495 0.71 -1.1 993,524 + DDA3937_RS04495 0.84 -1.4 993,525 - DDA3937_RS04495 0.84 -1.6 993,598 + -0.6 993,598 + -0.6 993,598 + +0.2 993,599 - +0.4 993,637 + -2.5 993,661 + -1.0 993,661 + -0.0 993,661 + -0.9 993,661 + +1.3 993,662 - +0.8 993,662 - -3.6 993,662 - -0.8 993,667 - -0.1 993,667 - +0.8 993,685 + -2.3 993,708 + +0.5 993,709 - -0.6 993,709 - -0.3 993,709 - -0.6
Or see this region's nucleotide sequence