Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04460 and DDA3937_RS04465 are separated by 103 nucleotides DDA3937_RS04465 and DDA3937_RS04470 are separated by 536 nucleotides
DDA3937_RS04460: DDA3937_RS04460 - HAMP domain-containing protein, at 984,880 to 986,283
_RS04460
DDA3937_RS04465: DDA3937_RS04465 - enoyl-CoA hydratase/isomerase family protein, at 986,387 to 987,352
_RS04465
DDA3937_RS04470: DDA3937_RS04470 - helix-turn-helix transcriptional regulator, at 987,889 to 988,443
_RS04470
Position (kb) 986
987
988 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 985.571 kb on + strand, within DDA3937_RS04460 at 985.572 kb on - strand, within DDA3937_RS04460 at 985.572 kb on - strand, within DDA3937_RS04460 at 985.572 kb on - strand, within DDA3937_RS04460 at 985.788 kb on + strand, within DDA3937_RS04460 at 985.789 kb on - strand, within DDA3937_RS04460 at 985.789 kb on - strand, within DDA3937_RS04460 at 985.831 kb on + strand, within DDA3937_RS04460 at 985.832 kb on - strand, within DDA3937_RS04460 at 985.936 kb on + strand, within DDA3937_RS04460 at 985.936 kb on + strand, within DDA3937_RS04460 at 985.936 kb on + strand, within DDA3937_RS04460 at 985.937 kb on - strand, within DDA3937_RS04460 at 985.937 kb on - strand, within DDA3937_RS04460 at 985.980 kb on + strand, within DDA3937_RS04460 at 985.983 kb on + strand, within DDA3937_RS04460 at 985.983 kb on + strand, within DDA3937_RS04460 at 985.983 kb on + strand, within DDA3937_RS04460 at 985.984 kb on - strand, within DDA3937_RS04460 at 985.984 kb on - strand, within DDA3937_RS04460 at 985.984 kb on - strand, within DDA3937_RS04460 at 985.984 kb on - strand, within DDA3937_RS04460 at 985.987 kb on - strand, within DDA3937_RS04460 at 986.303 kb on + strand at 986.388 kb on + strand at 986.389 kb on - strand at 986.389 kb on - strand at 986.389 kb on - strand at 986.403 kb on - strand at 986.434 kb on + strand at 986.434 kb on + strand at 986.434 kb on + strand at 986.472 kb on + strand at 986.472 kb on + strand at 986.472 kb on + strand at 986.473 kb on - strand at 986.588 kb on - strand, within DDA3937_RS04465 at 986.588 kb on - strand, within DDA3937_RS04465 at 986.591 kb on + strand, within DDA3937_RS04465 at 986.591 kb on + strand, within DDA3937_RS04465 at 986.591 kb on + strand, within DDA3937_RS04465 at 986.591 kb on + strand, within DDA3937_RS04465 at 986.591 kb on + strand, within DDA3937_RS04465 at 986.591 kb on + strand at 986.591 kb on + strand, within DDA3937_RS04465 at 986.591 kb on + strand, within DDA3937_RS04465 at 986.591 kb on + strand, within DDA3937_RS04465 at 986.591 kb on + strand, within DDA3937_RS04465 at 986.592 kb on - strand, within DDA3937_RS04465 at 986.592 kb on - strand, within DDA3937_RS04465 at 986.592 kb on - strand, within DDA3937_RS04465 at 986.592 kb on - strand, within DDA3937_RS04465 at 986.592 kb on - strand, within DDA3937_RS04465 at 986.592 kb on - strand, within DDA3937_RS04465 at 986.592 kb on - strand, within DDA3937_RS04465 at 986.592 kb on - strand, within DDA3937_RS04465 at 986.592 kb on - strand, within DDA3937_RS04465 at 986.592 kb on - strand, within DDA3937_RS04465 at 986.592 kb on - strand, within DDA3937_RS04465 at 986.592 kb on - strand, within DDA3937_RS04465 at 986.592 kb on - strand, within DDA3937_RS04465 at 986.592 kb on - strand, within DDA3937_RS04465 at 986.592 kb on - strand, within DDA3937_RS04465 at 986.593 kb on + strand, within DDA3937_RS04465 at 986.593 kb on + strand, within DDA3937_RS04465 at 986.593 kb on + strand, within DDA3937_RS04465 at 986.593 kb on + strand, within DDA3937_RS04465 at 986.593 kb on + strand, within DDA3937_RS04465 at 986.593 kb on + strand, within DDA3937_RS04465 at 986.593 kb on + strand, within DDA3937_RS04465 at 986.593 kb on + strand, within DDA3937_RS04465 at 986.594 kb on - strand, within DDA3937_RS04465 at 986.594 kb on - strand, within DDA3937_RS04465 at 986.594 kb on - strand, within DDA3937_RS04465 at 986.594 kb on - strand, within DDA3937_RS04465 at 986.594 kb on - strand, within DDA3937_RS04465 at 986.594 kb on - strand, within DDA3937_RS04465 at 986.594 kb on - strand, within DDA3937_RS04465 at 986.594 kb on - strand, within DDA3937_RS04465 at 986.594 kb on - strand, within DDA3937_RS04465 at 986.604 kb on - strand, within DDA3937_RS04465 at 986.640 kb on - strand, within DDA3937_RS04465 at 986.652 kb on + strand, within DDA3937_RS04465 at 986.653 kb on - strand, within DDA3937_RS04465 at 986.791 kb on + strand, within DDA3937_RS04465 at 986.791 kb on + strand, within DDA3937_RS04465 at 986.828 kb on + strand, within DDA3937_RS04465 at 986.828 kb on + strand, within DDA3937_RS04465 at 986.828 kb on + strand, within DDA3937_RS04465 at 986.828 kb on + strand, within DDA3937_RS04465 at 986.828 kb on + strand, within DDA3937_RS04465 at 986.828 kb on + strand, within DDA3937_RS04465 at 986.828 kb on + strand, within DDA3937_RS04465 at 986.828 kb on + strand, within DDA3937_RS04465 at 986.829 kb on - strand, within DDA3937_RS04465 at 986.829 kb on - strand, within DDA3937_RS04465 at 986.901 kb on + strand, within DDA3937_RS04465 at 986.901 kb on + strand, within DDA3937_RS04465 at 986.902 kb on - strand, within DDA3937_RS04465 at 986.902 kb on - strand, within DDA3937_RS04465 at 986.902 kb on - strand, within DDA3937_RS04465 at 986.902 kb on - strand, within DDA3937_RS04465 at 986.902 kb on - strand, within DDA3937_RS04465 at 986.905 kb on + strand, within DDA3937_RS04465 at 986.905 kb on + strand, within DDA3937_RS04465 at 986.905 kb on + strand, within DDA3937_RS04465 at 986.905 kb on + strand at 986.953 kb on + strand, within DDA3937_RS04465 at 986.968 kb on + strand, within DDA3937_RS04465 at 986.969 kb on - strand at 986.971 kb on - strand, within DDA3937_RS04465 at 986.971 kb on - strand, within DDA3937_RS04465 at 987.018 kb on - strand, within DDA3937_RS04465 at 987.051 kb on + strand, within DDA3937_RS04465 at 987.057 kb on + strand, within DDA3937_RS04465 at 987.057 kb on + strand, within DDA3937_RS04465 at 987.058 kb on - strand, within DDA3937_RS04465 at 987.058 kb on - strand, within DDA3937_RS04465 at 987.058 kb on - strand, within DDA3937_RS04465 at 987.058 kb on - strand, within DDA3937_RS04465 at 987.132 kb on - strand, within DDA3937_RS04465 at 987.137 kb on + strand, within DDA3937_RS04465 at 987.137 kb on + strand, within DDA3937_RS04465 at 987.137 kb on + strand, within DDA3937_RS04465 at 987.137 kb on + strand at 987.137 kb on + strand, within DDA3937_RS04465 at 987.138 kb on - strand, within DDA3937_RS04465 at 987.138 kb on - strand, within DDA3937_RS04465 at 987.138 kb on - strand, within DDA3937_RS04465 at 987.138 kb on - strand, within DDA3937_RS04465 at 987.138 kb on - strand, within DDA3937_RS04465 at 987.138 kb on - strand, within DDA3937_RS04465 at 987.275 kb on + strand at 987.275 kb on + strand at 987.276 kb on - strand at 987.322 kb on + strand at 987.323 kb on - strand at 987.323 kb on - strand at 987.332 kb on + strand at 987.332 kb on + strand at 987.333 kb on - strand at 987.333 kb on - strand at 987.354 kb on + strand at 987.355 kb on - strand at 987.355 kb on - strand at 987.355 kb on - strand at 987.357 kb on + strand at 987.357 kb on + strand at 987.358 kb on - strand at 987.358 kb on - strand at 987.358 kb on - strand at 987.373 kb on + strand at 987.378 kb on + strand at 987.378 kb on + strand at 987.499 kb on + strand at 987.499 kb on + strand at 987.500 kb on - strand at 987.508 kb on + strand at 987.509 kb on - strand at 987.514 kb on + strand at 987.515 kb on - strand at 987.515 kb on - strand at 987.524 kb on + strand at 987.543 kb on - strand at 987.701 kb on + strand at 987.701 kb on + strand at 987.701 kb on + strand at 987.701 kb on + strand at 987.701 kb on + strand at 987.701 kb on + strand at 987.701 kb on + strand at 987.702 kb on - strand at 987.702 kb on - strand at 987.702 kb on - strand at 987.702 kb on - strand at 987.702 kb on - strand at 987.705 kb on + strand at 987.705 kb on + strand at 987.705 kb on + strand at 987.705 kb on + strand at 987.705 kb on + strand at 987.705 kb on + strand at 987.705 kb on + strand at 987.706 kb on - strand at 987.706 kb on - strand at 987.706 kb on - strand at 987.706 kb on - strand at 987.819 kb on - strand at 987.847 kb on + strand at 987.848 kb on - strand at 987.848 kb on - strand at 987.849 kb on + strand at 987.850 kb on - strand at 987.850 kb on - strand at 987.854 kb on - strand at 987.854 kb on - strand at 988.003 kb on + strand, within DDA3937_RS04470 at 988.013 kb on + strand, within DDA3937_RS04470 at 988.013 kb on + strand, within DDA3937_RS04470 at 988.013 kb on + strand, within DDA3937_RS04470 at 988.014 kb on - strand, within DDA3937_RS04470 at 988.014 kb on - strand, within DDA3937_RS04470 at 988.014 kb on - strand, within DDA3937_RS04470 at 988.046 kb on + strand, within DDA3937_RS04470 at 988.060 kb on - strand, within DDA3937_RS04470 at 988.127 kb on - strand, within DDA3937_RS04470 at 988.130 kb on + strand, within DDA3937_RS04470 at 988.130 kb on + strand, within DDA3937_RS04470 at 988.130 kb on + strand, within DDA3937_RS04470 at 988.130 kb on + strand, within DDA3937_RS04470 at 988.130 kb on + strand, within DDA3937_RS04470 at 988.130 kb on + strand, within DDA3937_RS04470 at 988.130 kb on + strand, within DDA3937_RS04470 at 988.130 kb on + strand, within DDA3937_RS04470 at 988.130 kb on + strand, within DDA3937_RS04470 at 988.130 kb on + strand, within DDA3937_RS04470 at 988.130 kb on + strand, within DDA3937_RS04470 at 988.131 kb on - strand, within DDA3937_RS04470 at 988.131 kb on - strand, within DDA3937_RS04470 at 988.131 kb on - strand, within DDA3937_RS04470 at 988.131 kb on - strand, within DDA3937_RS04470 at 988.196 kb on + strand, within DDA3937_RS04470 at 988.197 kb on - strand, within DDA3937_RS04470 at 988.197 kb on - strand, within DDA3937_RS04470 at 988.197 kb on - strand, within DDA3937_RS04470 at 988.312 kb on - strand, within DDA3937_RS04470
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 985,571 + DDA3937_RS04460 0.49 -0.2 985,572 - DDA3937_RS04460 0.49 +0.8 985,572 - DDA3937_RS04460 0.49 -1.5 985,572 - DDA3937_RS04460 0.49 -2.8 985,788 + DDA3937_RS04460 0.65 -1.3 985,789 - DDA3937_RS04460 0.65 -0.4 985,789 - DDA3937_RS04460 0.65 -0.6 985,831 + DDA3937_RS04460 0.68 +0.4 985,832 - DDA3937_RS04460 0.68 -1.2 985,936 + DDA3937_RS04460 0.75 +0.2 985,936 + DDA3937_RS04460 0.75 -2.2 985,936 + DDA3937_RS04460 0.75 -0.8 985,937 - DDA3937_RS04460 0.75 -0.8 985,937 - DDA3937_RS04460 0.75 -1.8 985,980 + DDA3937_RS04460 0.78 -0.3 985,983 + DDA3937_RS04460 0.79 -0.8 985,983 + DDA3937_RS04460 0.79 -2.6 985,983 + DDA3937_RS04460 0.79 +0.2 985,984 - DDA3937_RS04460 0.79 -1.1 985,984 - DDA3937_RS04460 0.79 -0.8 985,984 - DDA3937_RS04460 0.79 -0.4 985,984 - DDA3937_RS04460 0.79 -0.3 985,987 - DDA3937_RS04460 0.79 -0.4 986,303 + +0.4 986,388 + -1.0 986,389 - -1.0 986,389 - +1.0 986,389 - -2.1 986,403 - -0.6 986,434 + -2.6 986,434 + +2.3 986,434 + -1.7 986,472 + +0.0 986,472 + -0.6 986,472 + -0.4 986,473 - -0.1 986,588 - DDA3937_RS04465 0.21 -1.1 986,588 - DDA3937_RS04465 0.21 -1.0 986,591 + DDA3937_RS04465 0.21 -1.1 986,591 + DDA3937_RS04465 0.21 -1.7 986,591 + DDA3937_RS04465 0.21 -0.8 986,591 + DDA3937_RS04465 0.21 -2.6 986,591 + DDA3937_RS04465 0.21 -0.9 986,591 + -0.3 986,591 + DDA3937_RS04465 0.21 +0.2 986,591 + DDA3937_RS04465 0.21 -1.0 986,591 + DDA3937_RS04465 0.21 -0.2 986,591 + DDA3937_RS04465 0.21 -1.8 986,592 - DDA3937_RS04465 0.21 -1.3 986,592 - DDA3937_RS04465 0.21 -1.2 986,592 - DDA3937_RS04465 0.21 -1.0 986,592 - DDA3937_RS04465 0.21 +2.2 986,592 - DDA3937_RS04465 0.21 -2.2 986,592 - DDA3937_RS04465 0.21 +0.3 986,592 - DDA3937_RS04465 0.21 +2.0 986,592 - DDA3937_RS04465 0.21 -0.6 986,592 - DDA3937_RS04465 0.21 +0.4 986,592 - DDA3937_RS04465 0.21 -0.1 986,592 - DDA3937_RS04465 0.21 +0.4 986,592 - DDA3937_RS04465 0.21 +1.2 986,592 - DDA3937_RS04465 0.21 -1.0 986,592 - DDA3937_RS04465 0.21 -0.3 986,592 - DDA3937_RS04465 0.21 -1.2 986,593 + DDA3937_RS04465 0.21 -1.6 986,593 + DDA3937_RS04465 0.21 -0.3 986,593 + DDA3937_RS04465 0.21 -0.3 986,593 + DDA3937_RS04465 0.21 -0.6 986,593 + DDA3937_RS04465 0.21 +0.6 986,593 + DDA3937_RS04465 0.21 -0.7 986,593 + DDA3937_RS04465 0.21 -0.3 986,593 + DDA3937_RS04465 0.21 -2.4 986,594 - DDA3937_RS04465 0.21 -0.8 986,594 - DDA3937_RS04465 0.21 +2.7 986,594 - DDA3937_RS04465 0.21 -1.2 986,594 - DDA3937_RS04465 0.21 +2.0 986,594 - DDA3937_RS04465 0.21 -3.2 986,594 - DDA3937_RS04465 0.21 -2.8 986,594 - DDA3937_RS04465 0.21 +0.1 986,594 - DDA3937_RS04465 0.21 +0.8 986,594 - DDA3937_RS04465 0.21 -1.6 986,604 - DDA3937_RS04465 0.22 -1.2 986,640 - DDA3937_RS04465 0.26 -1.5 986,652 + DDA3937_RS04465 0.27 +2.3 986,653 - DDA3937_RS04465 0.28 +1.0 986,791 + DDA3937_RS04465 0.42 -3.0 986,791 + DDA3937_RS04465 0.42 +0.1 986,828 + DDA3937_RS04465 0.46 -1.8 986,828 + DDA3937_RS04465 0.46 -0.1 986,828 + DDA3937_RS04465 0.46 -0.4 986,828 + DDA3937_RS04465 0.46 -0.8 986,828 + DDA3937_RS04465 0.46 -0.2 986,828 + DDA3937_RS04465 0.46 +0.3 986,828 + DDA3937_RS04465 0.46 -0.6 986,828 + DDA3937_RS04465 0.46 -1.0 986,829 - DDA3937_RS04465 0.46 -1.2 986,829 - DDA3937_RS04465 0.46 +0.8 986,901 + DDA3937_RS04465 0.53 -1.6 986,901 + DDA3937_RS04465 0.53 +1.4 986,902 - DDA3937_RS04465 0.53 -1.6 986,902 - DDA3937_RS04465 0.53 -0.8 986,902 - DDA3937_RS04465 0.53 -0.6 986,902 - DDA3937_RS04465 0.53 -1.7 986,902 - DDA3937_RS04465 0.53 -3.0 986,905 + DDA3937_RS04465 0.54 +1.6 986,905 + DDA3937_RS04465 0.54 -1.7 986,905 + DDA3937_RS04465 0.54 -1.5 986,905 + +0.0 986,953 + DDA3937_RS04465 0.59 -0.8 986,968 + DDA3937_RS04465 0.60 -0.3 986,969 - +0.4 986,971 - DDA3937_RS04465 0.60 -2.3 986,971 - DDA3937_RS04465 0.60 -0.2 987,018 - DDA3937_RS04465 0.65 -2.8 987,051 + DDA3937_RS04465 0.69 +0.2 987,057 + DDA3937_RS04465 0.69 -1.3 987,057 + DDA3937_RS04465 0.69 -1.2 987,058 - DDA3937_RS04465 0.69 +1.0 987,058 - DDA3937_RS04465 0.69 -0.0 987,058 - DDA3937_RS04465 0.69 -2.2 987,058 - DDA3937_RS04465 0.69 +1.0 987,132 - DDA3937_RS04465 0.77 -1.1 987,137 + DDA3937_RS04465 0.78 -2.4 987,137 + DDA3937_RS04465 0.78 -0.1 987,137 + DDA3937_RS04465 0.78 -0.9 987,137 + +0.4 987,137 + DDA3937_RS04465 0.78 +2.0 987,138 - DDA3937_RS04465 0.78 +0.1 987,138 - DDA3937_RS04465 0.78 +0.7 987,138 - DDA3937_RS04465 0.78 +0.4 987,138 - DDA3937_RS04465 0.78 +0.6 987,138 - DDA3937_RS04465 0.78 +0.7 987,138 - DDA3937_RS04465 0.78 -1.2 987,275 + -1.2 987,275 + -0.6 987,276 - -2.8 987,322 + -1.0 987,323 - -1.3 987,323 - -1.2 987,332 + +0.4 987,332 + -2.8 987,333 - +1.4 987,333 - +0.0 987,354 + +0.2 987,355 - +0.0 987,355 - -0.3 987,355 - +0.0 987,357 + +1.0 987,357 + -0.8 987,358 - -1.3 987,358 - -2.8 987,358 - -1.2 987,373 + +0.2 987,378 + +0.3 987,378 + +1.3 987,499 + -1.0 987,499 + -2.1 987,500 - -1.9 987,508 + +1.0 987,509 - -0.2 987,514 + -0.8 987,515 - -2.6 987,515 - +2.0 987,524 + -1.3 987,543 - +0.0 987,701 + +1.6 987,701 + -0.6 987,701 + +0.0 987,701 + +0.4 987,701 + +0.4 987,701 + -0.3 987,701 + -2.9 987,702 - -2.1 987,702 - -1.5 987,702 - +1.0 987,702 - -0.2 987,702 - -1.4 987,705 + -0.4 987,705 + -0.2 987,705 + +0.0 987,705 + +0.9 987,705 + +0.4 987,705 + +0.0 987,705 + +1.5 987,706 - -1.7 987,706 - -2.6 987,706 - -2.5 987,706 - -0.5 987,819 - +0.4 987,847 + -1.9 987,848 - -0.6 987,848 - -1.2 987,849 + +1.1 987,850 - +0.8 987,850 - -1.7 987,854 - -1.3 987,854 - -1.9 988,003 + DDA3937_RS04470 0.21 -0.9 988,013 + DDA3937_RS04470 0.22 +0.7 988,013 + DDA3937_RS04470 0.22 -0.6 988,013 + DDA3937_RS04470 0.22 +0.2 988,014 - DDA3937_RS04470 0.23 -2.5 988,014 - DDA3937_RS04470 0.23 -1.5 988,014 - DDA3937_RS04470 0.23 -0.6 988,046 + DDA3937_RS04470 0.28 -1.0 988,060 - DDA3937_RS04470 0.31 +2.0 988,127 - DDA3937_RS04470 0.43 +1.1 988,130 + DDA3937_RS04470 0.43 -1.0 988,130 + DDA3937_RS04470 0.43 -0.1 988,130 + DDA3937_RS04470 0.43 +2.2 988,130 + DDA3937_RS04470 0.43 -0.5 988,130 + DDA3937_RS04470 0.43 +0.3 988,130 + DDA3937_RS04470 0.43 +2.0 988,130 + DDA3937_RS04470 0.43 +1.1 988,130 + DDA3937_RS04470 0.43 -1.5 988,130 + DDA3937_RS04470 0.43 +0.2 988,130 + DDA3937_RS04470 0.43 +0.0 988,130 + DDA3937_RS04470 0.43 -1.9 988,131 - DDA3937_RS04470 0.44 +0.3 988,131 - DDA3937_RS04470 0.44 -1.0 988,131 - DDA3937_RS04470 0.44 -2.1 988,131 - DDA3937_RS04470 0.44 -0.1 988,196 + DDA3937_RS04470 0.55 -2.6 988,197 - DDA3937_RS04470 0.55 -0.8 988,197 - DDA3937_RS04470 0.55 +0.4 988,197 - DDA3937_RS04470 0.55 +0.1 988,312 - DDA3937_RS04470 0.76 +2.0
Or see this region's nucleotide sequence