Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04425 and DDA3937_RS04430 are separated by 688 nucleotides DDA3937_RS04430 and DDA3937_RS21675 are separated by 1 nucleotides DDA3937_RS21675 and DDA3937_RS04440 are separated by 38 nucleotides
DDA3937_RS04425: DDA3937_RS04425 - cysteine synthase CysM, at 976,922 to 977,803
_RS04425
DDA3937_RS04430: DDA3937_RS04430 - Hcp family type VI secretion system effector, at 978,492 to 978,971
_RS04430
DDA3937_RS21675: DDA3937_RS21675 - DUF4225 domain-containing protein, at 978,973 to 979,806
_RS21675
DDA3937_RS04440: DDA3937_RS04440 - hypothetical protein, at 979,845 to 980,234
_RS04440
Position (kb) 978
979 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 977.503 kb on + strand, within DDA3937_RS04425 at 977.503 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.567 kb on + strand, within DDA3937_RS04425 at 977.568 kb on - strand, within DDA3937_RS04425 at 977.568 kb on - strand, within DDA3937_RS04425 at 977.568 kb on - strand, within DDA3937_RS04425 at 977.568 kb on - strand, within DDA3937_RS04425 at 977.568 kb on - strand, within DDA3937_RS04425 at 977.568 kb on - strand, within DDA3937_RS04425 at 977.569 kb on + strand, within DDA3937_RS04425 at 977.569 kb on + strand, within DDA3937_RS04425 at 977.569 kb on + strand, within DDA3937_RS04425 at 977.570 kb on - strand, within DDA3937_RS04425 at 977.570 kb on - strand, within DDA3937_RS04425 at 977.570 kb on - strand, within DDA3937_RS04425 at 977.608 kb on + strand, within DDA3937_RS04425 at 977.608 kb on + strand, within DDA3937_RS04425 at 977.608 kb on + strand, within DDA3937_RS04425 at 977.608 kb on + strand, within DDA3937_RS04425 at 977.608 kb on + strand, within DDA3937_RS04425 at 977.614 kb on + strand, within DDA3937_RS04425 at 977.614 kb on + strand, within DDA3937_RS04425 at 977.615 kb on - strand, within DDA3937_RS04425 at 977.615 kb on - strand, within DDA3937_RS04425 at 977.777 kb on + strand at 977.777 kb on + strand at 977.853 kb on + strand at 977.853 kb on + strand at 977.866 kb on + strand at 977.867 kb on - strand at 978.001 kb on + strand at 978.001 kb on + strand at 978.001 kb on + strand at 978.002 kb on - strand at 978.002 kb on - strand at 978.002 kb on - strand at 978.002 kb on - strand at 978.005 kb on + strand at 978.006 kb on - strand at 978.018 kb on + strand at 978.018 kb on + strand at 978.019 kb on - strand at 978.050 kb on + strand at 978.050 kb on + strand at 978.050 kb on + strand at 978.050 kb on + strand at 978.050 kb on + strand at 978.051 kb on - strand at 978.051 kb on - strand at 978.051 kb on - strand at 978.051 kb on - strand at 978.051 kb on - strand at 978.051 kb on - strand at 978.051 kb on - strand at 978.086 kb on + strand at 978.086 kb on + strand at 978.086 kb on + strand at 978.087 kb on - strand at 978.087 kb on - strand at 978.088 kb on + strand at 978.088 kb on + strand at 978.089 kb on - strand at 978.089 kb on - strand at 978.089 kb on - strand at 978.089 kb on - strand at 978.092 kb on - strand at 978.092 kb on - strand at 978.092 kb on - strand at 978.210 kb on + strand at 978.397 kb on - strand at 978.400 kb on + strand at 978.400 kb on + strand at 978.401 kb on - strand at 978.401 kb on - strand at 978.437 kb on - strand at 978.518 kb on + strand at 978.518 kb on + strand at 978.519 kb on - strand at 978.539 kb on + strand at 978.644 kb on - strand, within DDA3937_RS04430 at 978.648 kb on - strand, within DDA3937_RS04430 at 978.659 kb on - strand, within DDA3937_RS04430 at 978.659 kb on - strand, within DDA3937_RS04430 at 978.789 kb on + strand, within DDA3937_RS04430 at 978.943 kb on - strand at 978.945 kb on - strand at 978.962 kb on - strand at 979.084 kb on + strand, within DDA3937_RS21675 at 979.086 kb on + strand, within DDA3937_RS21675 at 979.098 kb on - strand, within DDA3937_RS21675 at 979.181 kb on + strand, within DDA3937_RS21675 at 979.249 kb on - strand, within DDA3937_RS21675 at 979.502 kb on - strand, within DDA3937_RS21675 at 979.786 kb on + strand at 979.795 kb on - strand at 979.858 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 977,503 + DDA3937_RS04425 0.66 -0.6 977,503 + DDA3937_RS04425 0.66 -1.5 977,567 + DDA3937_RS04425 0.73 +0.6 977,567 + DDA3937_RS04425 0.73 +0.8 977,567 + DDA3937_RS04425 0.73 -0.4 977,567 + DDA3937_RS04425 0.73 -0.6 977,567 + DDA3937_RS04425 0.73 -0.6 977,567 + DDA3937_RS04425 0.73 +0.3 977,567 + DDA3937_RS04425 0.73 +0.8 977,567 + DDA3937_RS04425 0.73 +1.0 977,568 - DDA3937_RS04425 0.73 -0.3 977,568 - DDA3937_RS04425 0.73 -1.2 977,568 - DDA3937_RS04425 0.73 +0.3 977,568 - DDA3937_RS04425 0.73 +0.8 977,568 - DDA3937_RS04425 0.73 -0.2 977,568 - DDA3937_RS04425 0.73 -0.1 977,569 + DDA3937_RS04425 0.73 -1.6 977,569 + DDA3937_RS04425 0.73 -0.3 977,569 + DDA3937_RS04425 0.73 +0.5 977,570 - DDA3937_RS04425 0.73 -0.6 977,570 - DDA3937_RS04425 0.73 +0.6 977,570 - DDA3937_RS04425 0.73 -1.0 977,608 + DDA3937_RS04425 0.78 +1.4 977,608 + DDA3937_RS04425 0.78 +1.1 977,608 + DDA3937_RS04425 0.78 +1.4 977,608 + DDA3937_RS04425 0.78 -0.0 977,608 + DDA3937_RS04425 0.78 -0.0 977,614 + DDA3937_RS04425 0.78 +1.0 977,614 + DDA3937_RS04425 0.78 -0.1 977,615 - DDA3937_RS04425 0.79 -1.0 977,615 - DDA3937_RS04425 0.79 +0.7 977,777 + -0.7 977,777 + -1.6 977,853 + -0.0 977,853 + -0.0 977,866 + -1.3 977,867 - -1.0 978,001 + -1.2 978,001 + -0.9 978,001 + +0.5 978,002 - -2.1 978,002 - -2.1 978,002 - +0.4 978,002 - -0.8 978,005 + -1.9 978,006 - +0.3 978,018 + -0.8 978,018 + +1.7 978,019 - -1.6 978,050 + +2.0 978,050 + +1.2 978,050 + -0.5 978,050 + -1.8 978,050 + +0.7 978,051 - -1.3 978,051 - -0.3 978,051 - -0.0 978,051 - +0.4 978,051 - +0.3 978,051 - -0.6 978,051 - -1.3 978,086 + -0.0 978,086 + +2.3 978,086 + -0.2 978,087 - -1.8 978,087 - +0.4 978,088 + +0.7 978,088 + +0.1 978,089 - -1.0 978,089 - -2.4 978,089 - +0.6 978,089 - +0.9 978,092 - -0.0 978,092 - -0.6 978,092 - -1.0 978,210 + +0.1 978,397 - +0.7 978,400 + -0.0 978,400 + -2.5 978,401 - -1.3 978,401 - -0.7 978,437 - -2.5 978,518 + -0.3 978,518 + -2.2 978,519 - -2.6 978,539 + -2.1 978,644 - DDA3937_RS04430 0.32 -1.5 978,648 - DDA3937_RS04430 0.33 -1.1 978,659 - DDA3937_RS04430 0.35 -2.2 978,659 - DDA3937_RS04430 0.35 -2.1 978,789 + DDA3937_RS04430 0.62 -2.1 978,943 - -2.2 978,945 - -0.8 978,962 - +2.6 979,084 + DDA3937_RS21675 0.13 -2.8 979,086 + DDA3937_RS21675 0.14 -0.0 979,098 - DDA3937_RS21675 0.15 -0.6 979,181 + DDA3937_RS21675 0.25 -0.0 979,249 - DDA3937_RS21675 0.33 -1.6 979,502 - DDA3937_RS21675 0.63 -0.8 979,786 + -2.8 979,795 - +0.4 979,858 + -2.5
Or see this region's nucleotide sequence