Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04305 and DDA3937_RS04310 are separated by 155 nucleotides DDA3937_RS04310 and DDA3937_RS04315 overlap by 8 nucleotides DDA3937_RS04315 and DDA3937_RS04320 are separated by 56 nucleotides DDA3937_RS04320 and DDA3937_RS04325 are separated by 111 nucleotides
DDA3937_RS04305: DDA3937_RS04305 - SsrA-binding protein SmpB, at 947,711 to 948,193
_RS04305
DDA3937_RS04310: DDA3937_RS04310 - type II toxin-antitoxin system RatA family toxin, at 948,349 to 948,783
_RS04310
DDA3937_RS04315: DDA3937_RS04315 - RnfH family protein, at 948,776 to 949,069
_RS04315
DDA3937_RS04320: DDA3937_RS04320 - outer membrane protein assembly factor BamE, at 949,126 to 949,470
_RS04320
DDA3937_RS04325: DDA3937_RS04325 - DNA repair protein RecN, at 949,582 to 951,243
_RS04325
Position (kb) 948
949
950 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 948.030 kb on + strand, within DDA3937_RS04305 at 948.031 kb on - strand, within DDA3937_RS04305 at 948.031 kb on - strand, within DDA3937_RS04305 at 948.116 kb on + strand, within DDA3937_RS04305 at 948.172 kb on + strand at 948.173 kb on - strand at 948.205 kb on + strand at 948.206 kb on - strand at 948.206 kb on - strand at 948.208 kb on - strand at 948.208 kb on - strand at 948.208 kb on - strand at 948.208 kb on - strand at 948.208 kb on - strand at 948.248 kb on + strand at 948.248 kb on + strand at 948.249 kb on - strand at 948.313 kb on - strand at 948.313 kb on - strand at 948.313 kb on - strand at 948.315 kb on + strand at 948.315 kb on + strand at 948.316 kb on - strand at 948.348 kb on + strand at 948.547 kb on - strand, within DDA3937_RS04310 at 948.568 kb on - strand, within DDA3937_RS04310 at 948.568 kb on - strand, within DDA3937_RS04310 at 948.732 kb on + strand, within DDA3937_RS04310 at 948.772 kb on + strand at 948.773 kb on - strand at 948.804 kb on - strand at 948.804 kb on - strand at 948.825 kb on - strand, within DDA3937_RS04315 at 948.825 kb on - strand, within DDA3937_RS04315 at 948.825 kb on - strand, within DDA3937_RS04315 at 948.926 kb on - strand, within DDA3937_RS04315 at 949.026 kb on + strand, within DDA3937_RS04315 at 949.027 kb on - strand, within DDA3937_RS04315 at 949.027 kb on - strand, within DDA3937_RS04315 at 949.127 kb on + strand at 949.128 kb on - strand at 949.128 kb on - strand at 949.244 kb on + strand, within DDA3937_RS04320 at 949.244 kb on + strand, within DDA3937_RS04320 at 949.244 kb on + strand, within DDA3937_RS04320 at 949.244 kb on + strand, within DDA3937_RS04320 at 949.245 kb on - strand, within DDA3937_RS04320 at 949.245 kb on - strand, within DDA3937_RS04320 at 949.245 kb on - strand, within DDA3937_RS04320 at 949.245 kb on - strand, within DDA3937_RS04320 at 949.245 kb on - strand, within DDA3937_RS04320 at 949.245 kb on - strand, within DDA3937_RS04320 at 949.245 kb on - strand, within DDA3937_RS04320 at 949.245 kb on - strand, within DDA3937_RS04320 at 949.245 kb on - strand, within DDA3937_RS04320 at 949.247 kb on + strand, within DDA3937_RS04320 at 949.247 kb on + strand, within DDA3937_RS04320 at 949.247 kb on + strand, within DDA3937_RS04320 at 949.247 kb on + strand, within DDA3937_RS04320 at 949.298 kb on + strand, within DDA3937_RS04320 at 949.298 kb on + strand, within DDA3937_RS04320 at 949.298 kb on + strand, within DDA3937_RS04320 at 949.298 kb on + strand, within DDA3937_RS04320 at 949.299 kb on - strand, within DDA3937_RS04320 at 949.299 kb on - strand, within DDA3937_RS04320 at 949.299 kb on - strand, within DDA3937_RS04320 at 949.358 kb on + strand, within DDA3937_RS04320 at 949.358 kb on + strand, within DDA3937_RS04320 at 949.358 kb on + strand, within DDA3937_RS04320 at 949.358 kb on + strand, within DDA3937_RS04320 at 949.358 kb on + strand, within DDA3937_RS04320 at 949.358 kb on + strand, within DDA3937_RS04320 at 949.359 kb on - strand, within DDA3937_RS04320 at 949.359 kb on - strand, within DDA3937_RS04320 at 949.359 kb on - strand, within DDA3937_RS04320 at 949.359 kb on - strand, within DDA3937_RS04320 at 949.390 kb on + strand, within DDA3937_RS04320 at 949.390 kb on + strand, within DDA3937_RS04320 at 949.391 kb on - strand, within DDA3937_RS04320 at 949.391 kb on - strand, within DDA3937_RS04320 at 949.391 kb on - strand, within DDA3937_RS04320 at 949.425 kb on + strand, within DDA3937_RS04320 at 949.425 kb on + strand, within DDA3937_RS04320 at 949.426 kb on - strand, within DDA3937_RS04320 at 949.426 kb on - strand, within DDA3937_RS04320 at 949.426 kb on - strand, within DDA3937_RS04320 at 949.470 kb on + strand at 949.470 kb on + strand at 949.471 kb on - strand at 949.477 kb on + strand at 949.477 kb on + strand at 949.478 kb on - strand at 949.478 kb on - strand at 949.494 kb on + strand at 949.494 kb on + strand at 949.495 kb on - strand at 949.495 kb on - strand at 949.495 kb on - strand at 949.495 kb on - strand at 949.495 kb on - strand at 949.495 kb on - strand at 949.495 kb on - strand at 949.495 kb on - strand at 949.495 kb on - strand at 949.495 kb on - strand at 949.508 kb on + strand at 949.508 kb on + strand at 949.508 kb on + strand at 949.508 kb on + strand at 949.509 kb on - strand at 949.509 kb on - strand at 949.511 kb on + strand at 949.511 kb on + strand at 949.512 kb on - strand at 949.512 kb on - strand at 949.512 kb on - strand at 949.512 kb on - strand at 949.549 kb on - strand at 949.737 kb on - strand at 949.737 kb on - strand at 949.760 kb on - strand, within DDA3937_RS04325 at 949.909 kb on - strand, within DDA3937_RS04325 at 949.917 kb on + strand, within DDA3937_RS04325 at 949.918 kb on - strand, within DDA3937_RS04325 at 949.918 kb on - strand, within DDA3937_RS04325 at 949.918 kb on - strand, within DDA3937_RS04325
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 948,030 + DDA3937_RS04305 0.66 -1.3 948,031 - DDA3937_RS04305 0.66 +0.2 948,031 - DDA3937_RS04305 0.66 +0.0 948,116 + DDA3937_RS04305 0.84 -0.3 948,172 + -1.6 948,173 - +2.0 948,205 + +1.0 948,206 - -2.5 948,206 - -0.7 948,208 - -0.5 948,208 - +0.6 948,208 - +0.4 948,208 - -1.7 948,208 - +2.5 948,248 + -1.8 948,248 + -1.5 948,249 - -0.3 948,313 - +2.1 948,313 - -0.2 948,313 - -1.5 948,315 + -1.0 948,315 + -0.8 948,316 - +1.0 948,348 + +1.0 948,547 - DDA3937_RS04310 0.46 -1.2 948,568 - DDA3937_RS04310 0.50 +2.4 948,568 - DDA3937_RS04310 0.50 +0.1 948,732 + DDA3937_RS04310 0.88 -0.3 948,772 + -0.4 948,773 - +0.4 948,804 - +1.0 948,804 - -0.6 948,825 - DDA3937_RS04315 0.17 -0.9 948,825 - DDA3937_RS04315 0.17 -0.7 948,825 - DDA3937_RS04315 0.17 -1.7 948,926 - DDA3937_RS04315 0.51 -1.2 949,026 + DDA3937_RS04315 0.85 -1.2 949,027 - DDA3937_RS04315 0.85 -1.5 949,027 - DDA3937_RS04315 0.85 -0.0 949,127 + -2.3 949,128 - +1.0 949,128 - -2.8 949,244 + DDA3937_RS04320 0.34 -0.3 949,244 + DDA3937_RS04320 0.34 -1.2 949,244 + DDA3937_RS04320 0.34 -1.0 949,244 + DDA3937_RS04320 0.34 -0.3 949,245 - DDA3937_RS04320 0.34 +0.5 949,245 - DDA3937_RS04320 0.34 -0.3 949,245 - DDA3937_RS04320 0.34 -0.8 949,245 - DDA3937_RS04320 0.34 -0.3 949,245 - DDA3937_RS04320 0.34 -0.5 949,245 - DDA3937_RS04320 0.34 -0.6 949,245 - DDA3937_RS04320 0.34 -0.3 949,245 - DDA3937_RS04320 0.34 -1.9 949,245 - DDA3937_RS04320 0.34 -0.3 949,247 + DDA3937_RS04320 0.35 -0.8 949,247 + DDA3937_RS04320 0.35 -1.5 949,247 + DDA3937_RS04320 0.35 -0.0 949,247 + DDA3937_RS04320 0.35 -0.6 949,298 + DDA3937_RS04320 0.50 -0.3 949,298 + DDA3937_RS04320 0.50 -0.5 949,298 + DDA3937_RS04320 0.50 +2.0 949,298 + DDA3937_RS04320 0.50 -1.2 949,299 - DDA3937_RS04320 0.50 -1.8 949,299 - DDA3937_RS04320 0.50 +1.0 949,299 - DDA3937_RS04320 0.50 -0.6 949,358 + DDA3937_RS04320 0.67 +0.1 949,358 + DDA3937_RS04320 0.67 -0.6 949,358 + DDA3937_RS04320 0.67 -0.3 949,358 + DDA3937_RS04320 0.67 -1.0 949,358 + DDA3937_RS04320 0.67 -0.2 949,358 + DDA3937_RS04320 0.67 -2.0 949,359 - DDA3937_RS04320 0.68 -1.6 949,359 - DDA3937_RS04320 0.68 +1.2 949,359 - DDA3937_RS04320 0.68 +0.4 949,359 - DDA3937_RS04320 0.68 -2.2 949,390 + DDA3937_RS04320 0.77 -0.3 949,390 + DDA3937_RS04320 0.77 -0.3 949,391 - DDA3937_RS04320 0.77 -2.1 949,391 - DDA3937_RS04320 0.77 +1.0 949,391 - DDA3937_RS04320 0.77 +0.3 949,425 + DDA3937_RS04320 0.87 -0.0 949,425 + DDA3937_RS04320 0.87 +0.9 949,426 - DDA3937_RS04320 0.87 +1.2 949,426 - DDA3937_RS04320 0.87 -1.2 949,426 - DDA3937_RS04320 0.87 -0.0 949,470 + -0.6 949,470 + +0.8 949,471 - +2.0 949,477 + +0.9 949,477 + -0.8 949,478 - +0.8 949,478 - +2.0 949,494 + -0.3 949,494 + -0.0 949,495 - +0.2 949,495 - +2.0 949,495 - -1.4 949,495 - -0.8 949,495 - -0.8 949,495 - -2.0 949,495 - -1.8 949,495 - +0.4 949,495 - -1.3 949,495 - -0.0 949,508 + -0.3 949,508 + -0.6 949,508 + -2.3 949,508 + -0.0 949,509 - +0.0 949,509 - -1.4 949,511 + -1.4 949,511 + -1.0 949,512 - +1.2 949,512 - +2.1 949,512 - +1.6 949,512 - +0.2 949,549 - -0.8 949,737 - +0.2 949,737 - +2.3 949,760 - DDA3937_RS04325 0.11 -0.0 949,909 - DDA3937_RS04325 0.20 +0.4 949,917 + DDA3937_RS04325 0.20 -0.5 949,918 - DDA3937_RS04325 0.20 -2.0 949,918 - DDA3937_RS04325 0.20 +0.9 949,918 - DDA3937_RS04325 0.20 -0.3
Or see this region's nucleotide sequence