Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS23035 and DDA3937_RS23405 are separated by 477 nucleotides DDA3937_RS23405 and DDA3937_RS04180 are separated by 6 nucleotides DDA3937_RS04180 and DDA3937_RS04185 are separated by 53 nucleotides
DDA3937_RS23035: DDA3937_RS23035 - Fic family protein, at 924,557 to 925,606
_RS23035
DDA3937_RS23405: DDA3937_RS23405 - hypothetical protein, at 926,084 to 926,239
_RS23405
DDA3937_RS04180: DDA3937_RS04180 - ogr/Delta-like zinc finger family protein, at 926,246 to 926,512
_RS04180
DDA3937_RS04185: DDA3937_RS04185 - phage portal protein, at 926,566 to 927,615
_RS04185
Position (kb) 926
927 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 925.289 kb on - strand, within DDA3937_RS23035 at 925.325 kb on + strand, within DDA3937_RS23035 at 925.346 kb on + strand, within DDA3937_RS23035 at 925.372 kb on + strand, within DDA3937_RS23035 at 925.389 kb on + strand, within DDA3937_RS23035 at 925.398 kb on - strand, within DDA3937_RS23035 at 925.400 kb on - strand, within DDA3937_RS23035 at 925.574 kb on - strand at 925.591 kb on + strand at 925.667 kb on - strand at 925.823 kb on - strand at 925.896 kb on - strand at 925.896 kb on - strand at 925.900 kb on - strand at 925.900 kb on - strand at 925.955 kb on - strand at 926.010 kb on - strand at 926.065 kb on + strand at 926.066 kb on - strand at 926.066 kb on - strand at 926.082 kb on + strand at 926.226 kb on + strand at 926.226 kb on + strand at 926.226 kb on + strand at 926.227 kb on - strand at 926.247 kb on + strand at 926.273 kb on + strand, within DDA3937_RS04180 at 926.273 kb on + strand, within DDA3937_RS04180 at 926.421 kb on + strand, within DDA3937_RS04180 at 926.421 kb on + strand, within DDA3937_RS04180 at 926.422 kb on - strand, within DDA3937_RS04180 at 926.422 kb on - strand, within DDA3937_RS04180 at 926.422 kb on - strand, within DDA3937_RS04180 at 926.513 kb on - strand at 926.513 kb on - strand at 926.531 kb on + strand at 926.532 kb on - strand at 926.558 kb on - strand at 926.586 kb on + strand at 926.586 kb on + strand at 926.785 kb on + strand, within DDA3937_RS04185 at 926.785 kb on + strand, within DDA3937_RS04185 at 926.785 kb on + strand, within DDA3937_RS04185 at 926.786 kb on - strand, within DDA3937_RS04185 at 926.786 kb on - strand, within DDA3937_RS04185 at 926.786 kb on - strand, within DDA3937_RS04185 at 926.890 kb on + strand, within DDA3937_RS04185 at 926.970 kb on + strand, within DDA3937_RS04185 at 926.970 kb on + strand, within DDA3937_RS04185 at 927.021 kb on - strand, within DDA3937_RS04185 at 927.021 kb on - strand, within DDA3937_RS04185 at 927.021 kb on - strand, within DDA3937_RS04185 at 927.021 kb on - strand, within DDA3937_RS04185 at 927.023 kb on + strand, within DDA3937_RS04185 at 927.024 kb on - strand, within DDA3937_RS04185 at 927.084 kb on - strand, within DDA3937_RS04185 at 927.084 kb on - strand, within DDA3937_RS04185 at 927.098 kb on + strand, within DDA3937_RS04185 at 927.099 kb on - strand, within DDA3937_RS04185 at 927.119 kb on + strand, within DDA3937_RS04185 at 927.119 kb on + strand, within DDA3937_RS04185 at 927.119 kb on + strand, within DDA3937_RS04185 at 927.119 kb on + strand, within DDA3937_RS04185 at 927.120 kb on - strand, within DDA3937_RS04185 at 927.152 kb on + strand, within DDA3937_RS04185 at 927.179 kb on - strand, within DDA3937_RS04185 at 927.198 kb on + strand, within DDA3937_RS04185 at 927.212 kb on + strand, within DDA3937_RS04185 at 927.212 kb on + strand, within DDA3937_RS04185 at 927.212 kb on + strand, within DDA3937_RS04185 at 927.212 kb on + strand, within DDA3937_RS04185 at 927.213 kb on - strand at 927.213 kb on - strand, within DDA3937_RS04185 at 927.213 kb on - strand, within DDA3937_RS04185 at 927.213 kb on - strand, within DDA3937_RS04185 at 927.213 kb on - strand, within DDA3937_RS04185 at 927.213 kb on - strand, within DDA3937_RS04185 at 927.213 kb on - strand, within DDA3937_RS04185 at 927.213 kb on - strand, within DDA3937_RS04185 at 927.213 kb on - strand, within DDA3937_RS04185 at 927.213 kb on - strand, within DDA3937_RS04185 at 927.262 kb on + strand, within DDA3937_RS04185 at 927.263 kb on - strand, within DDA3937_RS04185 at 927.263 kb on - strand, within DDA3937_RS04185 at 927.267 kb on + strand, within DDA3937_RS04185 at 927.268 kb on - strand, within DDA3937_RS04185 at 927.268 kb on - strand, within DDA3937_RS04185 at 927.296 kb on + strand, within DDA3937_RS04185 at 927.347 kb on + strand, within DDA3937_RS04185 at 927.347 kb on + strand, within DDA3937_RS04185 at 927.348 kb on - strand, within DDA3937_RS04185 at 927.449 kb on + strand, within DDA3937_RS04185 at 927.449 kb on + strand, within DDA3937_RS04185 at 927.449 kb on + strand, within DDA3937_RS04185 at 927.449 kb on + strand, within DDA3937_RS04185 at 927.450 kb on - strand, within DDA3937_RS04185 at 927.456 kb on + strand, within DDA3937_RS04185 at 927.456 kb on + strand, within DDA3937_RS04185 at 927.470 kb on + strand, within DDA3937_RS04185 at 927.471 kb on - strand, within DDA3937_RS04185
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 925,289 - DDA3937_RS23035 0.70 +1.0 925,325 + DDA3937_RS23035 0.73 -1.0 925,346 + DDA3937_RS23035 0.75 -1.5 925,372 + DDA3937_RS23035 0.78 +1.4 925,389 + DDA3937_RS23035 0.79 -1.6 925,398 - DDA3937_RS23035 0.80 -2.4 925,400 - DDA3937_RS23035 0.80 -1.0 925,574 - +1.4 925,591 + +1.5 925,667 - +0.2 925,823 - +0.7 925,896 - -1.5 925,896 - +3.0 925,900 - -1.3 925,900 - +0.4 925,955 - -1.2 926,010 - -0.9 926,065 + +0.0 926,066 - -0.3 926,066 - +0.0 926,082 + -0.7 926,226 + +1.2 926,226 + -1.0 926,226 + +0.4 926,227 - +0.0 926,247 + -2.0 926,273 + DDA3937_RS04180 0.10 -2.0 926,273 + DDA3937_RS04180 0.10 +0.4 926,421 + DDA3937_RS04180 0.66 -0.9 926,421 + DDA3937_RS04180 0.66 -1.1 926,422 - DDA3937_RS04180 0.66 +1.3 926,422 - DDA3937_RS04180 0.66 -0.3 926,422 - DDA3937_RS04180 0.66 -3.1 926,513 - +1.1 926,513 - +0.2 926,531 + -2.3 926,532 - -0.3 926,558 - -2.2 926,586 + +0.0 926,586 + -0.2 926,785 + DDA3937_RS04185 0.21 +3.3 926,785 + DDA3937_RS04185 0.21 +1.0 926,785 + DDA3937_RS04185 0.21 -2.7 926,786 - DDA3937_RS04185 0.21 -0.3 926,786 - DDA3937_RS04185 0.21 +2.1 926,786 - DDA3937_RS04185 0.21 -1.0 926,890 + DDA3937_RS04185 0.31 +2.9 926,970 + DDA3937_RS04185 0.38 +0.4 926,970 + DDA3937_RS04185 0.38 -1.0 927,021 - DDA3937_RS04185 0.43 +1.1 927,021 - DDA3937_RS04185 0.43 +0.8 927,021 - DDA3937_RS04185 0.43 -0.2 927,021 - DDA3937_RS04185 0.43 -0.8 927,023 + DDA3937_RS04185 0.44 -0.5 927,024 - DDA3937_RS04185 0.44 +0.0 927,084 - DDA3937_RS04185 0.49 -0.6 927,084 - DDA3937_RS04185 0.49 -0.8 927,098 + DDA3937_RS04185 0.51 -0.6 927,099 - DDA3937_RS04185 0.51 +0.0 927,119 + DDA3937_RS04185 0.53 -0.3 927,119 + DDA3937_RS04185 0.53 -1.6 927,119 + DDA3937_RS04185 0.53 +1.6 927,119 + DDA3937_RS04185 0.53 -0.5 927,120 - DDA3937_RS04185 0.53 -1.9 927,152 + DDA3937_RS04185 0.56 -0.9 927,179 - DDA3937_RS04185 0.58 -0.0 927,198 + DDA3937_RS04185 0.60 -0.8 927,212 + DDA3937_RS04185 0.62 -0.5 927,212 + DDA3937_RS04185 0.62 +1.9 927,212 + DDA3937_RS04185 0.62 -1.4 927,212 + DDA3937_RS04185 0.62 +0.5 927,213 - +1.0 927,213 - DDA3937_RS04185 0.62 +0.2 927,213 - DDA3937_RS04185 0.62 +0.0 927,213 - DDA3937_RS04185 0.62 -0.2 927,213 - DDA3937_RS04185 0.62 +0.0 927,213 - DDA3937_RS04185 0.62 -0.3 927,213 - DDA3937_RS04185 0.62 +0.3 927,213 - DDA3937_RS04185 0.62 -1.8 927,213 - DDA3937_RS04185 0.62 -2.8 927,213 - DDA3937_RS04185 0.62 +1.3 927,262 + DDA3937_RS04185 0.66 +0.4 927,263 - DDA3937_RS04185 0.66 +0.5 927,263 - DDA3937_RS04185 0.66 -2.2 927,267 + DDA3937_RS04185 0.67 -0.9 927,268 - DDA3937_RS04185 0.67 -1.7 927,268 - DDA3937_RS04185 0.67 +0.3 927,296 + DDA3937_RS04185 0.70 +0.2 927,347 + DDA3937_RS04185 0.74 -0.6 927,347 + DDA3937_RS04185 0.74 +0.2 927,348 - DDA3937_RS04185 0.74 -0.3 927,449 + DDA3937_RS04185 0.84 -0.1 927,449 + DDA3937_RS04185 0.84 +0.0 927,449 + DDA3937_RS04185 0.84 -1.6 927,449 + DDA3937_RS04185 0.84 +0.4 927,450 - DDA3937_RS04185 0.84 +1.8 927,456 + DDA3937_RS04185 0.85 +1.0 927,456 + DDA3937_RS04185 0.85 -0.6 927,470 + DDA3937_RS04185 0.86 -2.7 927,471 - DDA3937_RS04185 0.86 +1.0
Or see this region's nucleotide sequence