Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04145 and DDA3937_RS23480 are separated by 96 nucleotides DDA3937_RS23480 and DDA3937_RS04150 are separated by 12 nucleotides DDA3937_RS04150 and DDA3937_RS04155 are separated by 70 nucleotides DDA3937_RS04155 and DDA3937_RS04160 overlap by 1 nucleotides DDA3937_RS04160 and DDA3937_RS04165 overlap by 4 nucleotides
DDA3937_RS04145: DDA3937_RS04145 - phage regulatory CII family protein, at 920,427 to 920,936
_RS04145
DDA3937_RS23480: DDA3937_RS23480 - hypothetical protein, at 921,033 to 921,188
_RS23480
DDA3937_RS04150: DDA3937_RS04150 - hypothetical protein, at 921,201 to 921,530
_RS04150
DDA3937_RS04155: DDA3937_RS04155 - DUF2732 domain-containing protein, at 921,601 to 921,828
_RS04155
DDA3937_RS04160: DDA3937_RS04160 - DUF5405 family protein, at 921,828 to 922,151
_RS04160
DDA3937_RS04165: DDA3937_RS04165 - replication endonuclease, at 922,148 to 924,190
_RS04165
Position (kb) 921
922
923 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 920.862 kb on - strand, within DDA3937_RS04145 at 920.938 kb on - strand at 920.938 kb on - strand at 920.989 kb on - strand at 920.989 kb on - strand at 920.989 kb on - strand at 921.003 kb on - strand at 921.003 kb on - strand at 921.017 kb on - strand at 921.135 kb on - strand, within DDA3937_RS23480 at 921.200 kb on + strand at 921.200 kb on + strand at 921.200 kb on + strand at 921.200 kb on + strand at 921.200 kb on + strand at 921.200 kb on + strand at 921.201 kb on - strand at 921.201 kb on - strand at 921.201 kb on - strand at 921.201 kb on - strand at 921.257 kb on + strand, within DDA3937_RS04150 at 921.258 kb on - strand, within DDA3937_RS04150 at 921.316 kb on + strand, within DDA3937_RS04150 at 921.316 kb on + strand, within DDA3937_RS04150 at 921.357 kb on - strand, within DDA3937_RS04150 at 921.357 kb on - strand, within DDA3937_RS04150 at 921.359 kb on + strand at 921.359 kb on + strand, within DDA3937_RS04150 at 921.359 kb on + strand, within DDA3937_RS04150 at 921.359 kb on + strand, within DDA3937_RS04150 at 921.359 kb on + strand, within DDA3937_RS04150 at 921.359 kb on + strand, within DDA3937_RS04150 at 921.360 kb on - strand, within DDA3937_RS04150 at 921.360 kb on - strand, within DDA3937_RS04150 at 921.360 kb on - strand, within DDA3937_RS04150 at 921.360 kb on - strand, within DDA3937_RS04150 at 921.360 kb on - strand, within DDA3937_RS04150 at 921.360 kb on - strand, within DDA3937_RS04150 at 921.360 kb on - strand, within DDA3937_RS04150 at 921.363 kb on + strand, within DDA3937_RS04150 at 921.363 kb on + strand at 921.380 kb on + strand, within DDA3937_RS04150 at 921.417 kb on - strand, within DDA3937_RS04150 at 921.452 kb on - strand, within DDA3937_RS04150 at 921.452 kb on - strand, within DDA3937_RS04150 at 921.529 kb on - strand at 921.529 kb on - strand at 921.540 kb on - strand at 921.550 kb on - strand at 921.550 kb on - strand at 921.550 kb on - strand at 921.699 kb on - strand, within DDA3937_RS04155 at 921.699 kb on - strand, within DDA3937_RS04155 at 921.699 kb on - strand, within DDA3937_RS04155 at 921.699 kb on - strand, within DDA3937_RS04155 at 921.699 kb on - strand, within DDA3937_RS04155 at 921.699 kb on - strand, within DDA3937_RS04155 at 921.699 kb on - strand, within DDA3937_RS04155 at 921.709 kb on - strand, within DDA3937_RS04155 at 921.709 kb on - strand, within DDA3937_RS04155 at 921.709 kb on - strand, within DDA3937_RS04155 at 921.768 kb on - strand, within DDA3937_RS04155 at 921.822 kb on + strand at 921.822 kb on + strand at 921.823 kb on - strand at 921.823 kb on - strand at 921.823 kb on - strand at 921.823 kb on - strand at 921.823 kb on - strand at 921.827 kb on - strand at 921.834 kb on - strand at 921.834 kb on - strand at 921.852 kb on + strand at 921.852 kb on + strand at 921.852 kb on + strand at 921.852 kb on + strand at 921.852 kb on + strand at 921.852 kb on + strand at 921.852 kb on + strand at 921.852 kb on + strand at 921.853 kb on - strand at 921.853 kb on - strand at 921.853 kb on - strand at 921.853 kb on - strand at 921.855 kb on - strand at 921.855 kb on - strand at 921.855 kb on - strand at 921.855 kb on - strand at 921.954 kb on + strand, within DDA3937_RS04160 at 921.954 kb on + strand, within DDA3937_RS04160 at 921.954 kb on + strand, within DDA3937_RS04160 at 921.954 kb on + strand, within DDA3937_RS04160 at 921.955 kb on - strand, within DDA3937_RS04160 at 921.955 kb on - strand, within DDA3937_RS04160 at 921.956 kb on + strand, within DDA3937_RS04160 at 921.975 kb on + strand, within DDA3937_RS04160 at 921.990 kb on - strand, within DDA3937_RS04160 at 922.120 kb on + strand at 922.142 kb on - strand at 922.230 kb on + strand at 922.231 kb on - strand at 922.235 kb on + strand at 922.235 kb on + strand at 922.235 kb on + strand at 922.235 kb on + strand at 922.236 kb on - strand at 922.236 kb on - strand at 922.236 kb on - strand at 922.236 kb on - strand at 922.236 kb on - strand at 922.236 kb on - strand at 922.236 kb on - strand at 922.292 kb on + strand at 922.292 kb on + strand at 922.292 kb on + strand at 922.293 kb on - strand at 922.355 kb on - strand, within DDA3937_RS04165 at 922.390 kb on + strand, within DDA3937_RS04165 at 922.390 kb on + strand, within DDA3937_RS04165 at 922.391 kb on - strand, within DDA3937_RS04165 at 922.422 kb on + strand, within DDA3937_RS04165 at 922.422 kb on + strand, within DDA3937_RS04165 at 922.423 kb on - strand, within DDA3937_RS04165 at 922.527 kb on - strand, within DDA3937_RS04165 at 922.595 kb on + strand, within DDA3937_RS04165 at 922.630 kb on - strand, within DDA3937_RS04165 at 922.630 kb on - strand, within DDA3937_RS04165 at 922.642 kb on + strand, within DDA3937_RS04165 at 922.642 kb on + strand, within DDA3937_RS04165 at 922.642 kb on + strand, within DDA3937_RS04165 at 922.642 kb on + strand, within DDA3937_RS04165 at 922.642 kb on + strand, within DDA3937_RS04165 at 922.643 kb on - strand, within DDA3937_RS04165 at 922.643 kb on - strand, within DDA3937_RS04165 at 922.643 kb on - strand, within DDA3937_RS04165 at 922.643 kb on - strand, within DDA3937_RS04165 at 922.643 kb on - strand, within DDA3937_RS04165 at 922.643 kb on - strand, within DDA3937_RS04165 at 922.643 kb on - strand, within DDA3937_RS04165 at 922.770 kb on + strand, within DDA3937_RS04165 at 922.770 kb on + strand, within DDA3937_RS04165 at 922.770 kb on + strand, within DDA3937_RS04165 at 922.771 kb on - strand, within DDA3937_RS04165 at 922.881 kb on - strand, within DDA3937_RS04165 at 922.881 kb on - strand, within DDA3937_RS04165 at 923.102 kb on + strand, within DDA3937_RS04165 at 923.103 kb on - strand, within DDA3937_RS04165
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 920,862 - DDA3937_RS04145 0.85 -0.1 920,938 - +1.4 920,938 - +0.4 920,989 - +0.3 920,989 - -1.0 920,989 - -1.4 921,003 - -0.8 921,003 - -2.8 921,017 - +0.3 921,135 - DDA3937_RS23480 0.65 -1.7 921,200 + -1.8 921,200 + +1.3 921,200 + +0.7 921,200 + +0.3 921,200 + -1.4 921,200 + +0.4 921,201 - -0.6 921,201 - -1.4 921,201 - -0.8 921,201 - -2.6 921,257 + DDA3937_RS04150 0.17 -3.1 921,258 - DDA3937_RS04150 0.17 -3.3 921,316 + DDA3937_RS04150 0.35 -1.7 921,316 + DDA3937_RS04150 0.35 -1.0 921,357 - DDA3937_RS04150 0.47 +2.0 921,357 - DDA3937_RS04150 0.47 +0.2 921,359 + +1.0 921,359 + DDA3937_RS04150 0.48 -2.2 921,359 + DDA3937_RS04150 0.48 +1.7 921,359 + DDA3937_RS04150 0.48 -1.7 921,359 + DDA3937_RS04150 0.48 -0.2 921,359 + DDA3937_RS04150 0.48 -0.1 921,360 - DDA3937_RS04150 0.48 -1.5 921,360 - DDA3937_RS04150 0.48 -0.3 921,360 - DDA3937_RS04150 0.48 -0.4 921,360 - DDA3937_RS04150 0.48 -2.8 921,360 - DDA3937_RS04150 0.48 -1.0 921,360 - DDA3937_RS04150 0.48 -0.5 921,360 - DDA3937_RS04150 0.48 +2.0 921,363 + DDA3937_RS04150 0.49 -1.6 921,363 + +3.3 921,380 + DDA3937_RS04150 0.54 +0.7 921,417 - DDA3937_RS04150 0.65 -1.1 921,452 - DDA3937_RS04150 0.76 -3.3 921,452 - DDA3937_RS04150 0.76 +1.0 921,529 - -2.2 921,529 - -1.7 921,540 - -0.7 921,550 - +1.0 921,550 - +1.0 921,550 - +0.4 921,699 - DDA3937_RS04155 0.43 +0.0 921,699 - DDA3937_RS04155 0.43 -1.1 921,699 - DDA3937_RS04155 0.43 -0.8 921,699 - DDA3937_RS04155 0.43 +1.6 921,699 - DDA3937_RS04155 0.43 +0.1 921,699 - DDA3937_RS04155 0.43 +0.1 921,699 - DDA3937_RS04155 0.43 -2.0 921,709 - DDA3937_RS04155 0.47 -0.4 921,709 - DDA3937_RS04155 0.47 -1.6 921,709 - DDA3937_RS04155 0.47 -0.6 921,768 - DDA3937_RS04155 0.73 -1.0 921,822 + -1.0 921,822 + -1.2 921,823 - -4.5 921,823 - -0.2 921,823 - -1.8 921,823 - +1.5 921,823 - -0.8 921,827 - -1.1 921,834 - -0.3 921,834 - -1.4 921,852 + +0.4 921,852 + -1.2 921,852 + -0.2 921,852 + -0.7 921,852 + -0.6 921,852 + +2.8 921,852 + +2.1 921,852 + +2.3 921,853 - -1.9 921,853 - -0.5 921,853 - +0.0 921,853 - -0.8 921,855 - -1.9 921,855 - +0.0 921,855 - -3.1 921,855 - -1.3 921,954 + DDA3937_RS04160 0.39 -0.6 921,954 + DDA3937_RS04160 0.39 -0.8 921,954 + DDA3937_RS04160 0.39 -2.0 921,954 + DDA3937_RS04160 0.39 +2.0 921,955 - DDA3937_RS04160 0.39 +0.5 921,955 - DDA3937_RS04160 0.39 -1.2 921,956 + DDA3937_RS04160 0.40 -0.6 921,975 + DDA3937_RS04160 0.45 -0.2 921,990 - DDA3937_RS04160 0.50 -1.5 922,120 + +1.2 922,142 - -2.3 922,230 + +2.1 922,231 - +0.2 922,235 + +2.0 922,235 + -0.1 922,235 + -2.2 922,235 + -0.3 922,236 - +0.3 922,236 - -1.5 922,236 - -2.4 922,236 - +1.3 922,236 - +0.0 922,236 - -0.3 922,236 - -0.6 922,292 + +0.8 922,292 + -0.5 922,292 + -0.6 922,293 - -1.2 922,355 - DDA3937_RS04165 0.10 +2.0 922,390 + DDA3937_RS04165 0.12 +1.6 922,390 + DDA3937_RS04165 0.12 -1.6 922,391 - DDA3937_RS04165 0.12 +0.8 922,422 + DDA3937_RS04165 0.13 -2.8 922,422 + DDA3937_RS04165 0.13 -1.4 922,423 - DDA3937_RS04165 0.13 +1.0 922,527 - DDA3937_RS04165 0.19 -0.9 922,595 + DDA3937_RS04165 0.22 +0.1 922,630 - DDA3937_RS04165 0.24 -1.7 922,630 - DDA3937_RS04165 0.24 -0.8 922,642 + DDA3937_RS04165 0.24 -1.7 922,642 + DDA3937_RS04165 0.24 -1.2 922,642 + DDA3937_RS04165 0.24 -0.8 922,642 + DDA3937_RS04165 0.24 +0.3 922,642 + DDA3937_RS04165 0.24 +1.3 922,643 - DDA3937_RS04165 0.24 +0.0 922,643 - DDA3937_RS04165 0.24 +2.0 922,643 - DDA3937_RS04165 0.24 -2.3 922,643 - DDA3937_RS04165 0.24 +0.0 922,643 - DDA3937_RS04165 0.24 +2.0 922,643 - DDA3937_RS04165 0.24 -2.4 922,643 - DDA3937_RS04165 0.24 +0.2 922,770 + DDA3937_RS04165 0.30 -0.8 922,770 + DDA3937_RS04165 0.30 +0.4 922,770 + DDA3937_RS04165 0.30 -1.8 922,771 - DDA3937_RS04165 0.30 -2.0 922,881 - DDA3937_RS04165 0.36 -1.0 922,881 - DDA3937_RS04165 0.36 -0.5 923,102 + DDA3937_RS04165 0.47 +2.7 923,103 - DDA3937_RS04165 0.47 +2.0
Or see this region's nucleotide sequence