Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04130

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS04125 and DDA3937_RS04130 are separated by 1 nucleotidesDDA3937_RS04130 and DDA3937_RS04135 are separated by 3 nucleotidesDDA3937_RS04135 and DDA3937_RS23030 are separated by 123 nucleotides DDA3937_RS04125: DDA3937_RS04125 - acetyltransferase, at 917,000 to 918,073 _RS04125 DDA3937_RS04130: DDA3937_RS04130 - hypothetical protein, at 918,075 to 918,857 _RS04130 DDA3937_RS04135: DDA3937_RS04135 - helix-turn-helix domain-containing protein, at 918,861 to 919,712 _RS04135 DDA3937_RS23030: DDA3937_RS23030 - helix-turn-helix domain containing protein, at 919,836 to 920,054 _RS23030 Position (kb) 918 919Strain fitness (log2 ratio) -3 -2 -1 0 1at 917.208 kb on - strand, within DDA3937_RS04125at 917.332 kb on - strand, within DDA3937_RS04125at 917.332 kb on - strand, within DDA3937_RS04125at 917.397 kb on - strand, within DDA3937_RS04125at 917.443 kb on - strand, within DDA3937_RS04125at 917.459 kb on - strand, within DDA3937_RS04125at 917.459 kb on - strand, within DDA3937_RS04125at 917.565 kb on + strand, within DDA3937_RS04125at 917.700 kb on + strand, within DDA3937_RS04125at 917.701 kb on - strand, within DDA3937_RS04125at 917.839 kb on + strand, within DDA3937_RS04125at 917.839 kb on + strand, within DDA3937_RS04125at 917.840 kb on - strand, within DDA3937_RS04125at 917.870 kb on + strand, within DDA3937_RS04125at 917.938 kb on - strand, within DDA3937_RS04125at 917.938 kb on - strand, within DDA3937_RS04125at 918.150 kb on + strandat 918.170 kb on + strand, within DDA3937_RS04130at 918.202 kb on + strand, within DDA3937_RS04130at 918.506 kb on + strand, within DDA3937_RS04130at 918.830 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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917,208 - DDA3937_RS04125 0.19 -2.3
917,332 - DDA3937_RS04125 0.31 -1.1
917,332 - DDA3937_RS04125 0.31 -1.0
917,397 - DDA3937_RS04125 0.37 -1.5
917,443 - DDA3937_RS04125 0.41 -1.3
917,459 - DDA3937_RS04125 0.43 +0.7
917,459 - DDA3937_RS04125 0.43 -0.0
917,565 + DDA3937_RS04125 0.53 -0.0
917,700 + DDA3937_RS04125 0.65 -1.7
917,701 - DDA3937_RS04125 0.65 -1.2
917,839 + DDA3937_RS04125 0.78 +0.4
917,839 + DDA3937_RS04125 0.78 +1.3
917,840 - DDA3937_RS04125 0.78 -1.7
917,870 + DDA3937_RS04125 0.81 -2.8
917,938 - DDA3937_RS04125 0.87 +0.8
917,938 - DDA3937_RS04125 0.87 -0.3
918,150 + -2.3
918,170 + DDA3937_RS04130 0.12 -1.5
918,202 + DDA3937_RS04130 0.16 -1.8
918,506 + DDA3937_RS04130 0.55 -1.6
918,830 + -0.2

Or see this region's nucleotide sequence