Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03995 and DDA3937_RS04000 are separated by 50 nucleotides DDA3937_RS04000 and DDA3937_RS04005 overlap by 4 nucleotides DDA3937_RS04005 and DDA3937_RS04010 are separated by 10 nucleotides
DDA3937_RS03995: DDA3937_RS03995 - P-type conjugative transfer ATPase TrbB, at 892,577 to 893,530
_RS03995
DDA3937_RS04000: DDA3937_RS04000 - TrbC/VirB2 family protein, at 893,581 to 893,874
_RS04000
DDA3937_RS04005: DDA3937_RS04005 - VirB3 family type IV secretion system protein, at 893,871 to 894,143
_RS04005
DDA3937_RS04010: DDA3937_RS04010 - conjugal transfer protein TrbE, at 894,154 to 896,604
_RS04010
Position (kb) 893
894 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 892.583 kb on + strand at 892.584 kb on - strand at 892.648 kb on + strand at 892.648 kb on + strand at 892.649 kb on - strand at 892.649 kb on - strand at 892.649 kb on - strand at 892.836 kb on + strand, within DDA3937_RS03995 at 892.837 kb on - strand, within DDA3937_RS03995 at 892.876 kb on + strand, within DDA3937_RS03995 at 892.876 kb on + strand, within DDA3937_RS03995 at 892.910 kb on + strand, within DDA3937_RS03995 at 892.910 kb on + strand, within DDA3937_RS03995 at 892.910 kb on + strand, within DDA3937_RS03995 at 893.150 kb on - strand, within DDA3937_RS03995 at 893.150 kb on - strand, within DDA3937_RS03995 at 893.388 kb on + strand, within DDA3937_RS03995 at 893.388 kb on + strand, within DDA3937_RS03995 at 893.389 kb on - strand, within DDA3937_RS03995 at 893.389 kb on - strand, within DDA3937_RS03995 at 893.389 kb on - strand, within DDA3937_RS03995 at 893.389 kb on - strand, within DDA3937_RS03995 at 893.462 kb on + strand at 893.511 kb on + strand at 893.577 kb on + strand at 893.577 kb on + strand at 893.578 kb on - strand at 893.578 kb on - strand at 893.578 kb on - strand at 893.578 kb on - strand at 893.578 kb on - strand at 893.629 kb on + strand, within DDA3937_RS04000 at 893.629 kb on + strand, within DDA3937_RS04000 at 893.630 kb on - strand, within DDA3937_RS04000 at 893.646 kb on + strand, within DDA3937_RS04000 at 893.646 kb on + strand, within DDA3937_RS04000 at 893.646 kb on + strand, within DDA3937_RS04000 at 893.646 kb on + strand, within DDA3937_RS04000 at 893.646 kb on + strand, within DDA3937_RS04000 at 893.646 kb on + strand, within DDA3937_RS04000 at 893.647 kb on - strand, within DDA3937_RS04000 at 893.647 kb on - strand, within DDA3937_RS04000 at 893.647 kb on - strand, within DDA3937_RS04000 at 893.647 kb on - strand, within DDA3937_RS04000 at 893.647 kb on - strand, within DDA3937_RS04000 at 893.687 kb on + strand, within DDA3937_RS04000 at 893.687 kb on + strand, within DDA3937_RS04000 at 893.687 kb on + strand, within DDA3937_RS04000 at 893.687 kb on + strand, within DDA3937_RS04000 at 893.687 kb on + strand, within DDA3937_RS04000 at 893.687 kb on + strand, within DDA3937_RS04000 at 893.688 kb on - strand, within DDA3937_RS04000 at 893.688 kb on - strand, within DDA3937_RS04000 at 893.688 kb on - strand, within DDA3937_RS04000 at 893.870 kb on + strand at 893.870 kb on + strand at 893.870 kb on + strand at 893.870 kb on + strand at 893.871 kb on - strand at 893.871 kb on - strand at 893.871 kb on - strand at 893.871 kb on - strand at 893.883 kb on + strand at 893.908 kb on + strand, within DDA3937_RS04005 at 893.960 kb on + strand, within DDA3937_RS04005 at 894.053 kb on + strand, within DDA3937_RS04005 at 894.113 kb on + strand, within DDA3937_RS04005 at 894.113 kb on + strand, within DDA3937_RS04005 at 894.114 kb on - strand, within DDA3937_RS04005 at 894.114 kb on - strand, within DDA3937_RS04005 at 894.114 kb on - strand, within DDA3937_RS04005 at 894.115 kb on + strand, within DDA3937_RS04005 at 894.115 kb on + strand, within DDA3937_RS04005 at 894.115 kb on + strand, within DDA3937_RS04005 at 894.115 kb on + strand, within DDA3937_RS04005 at 894.115 kb on + strand, within DDA3937_RS04005 at 894.115 kb on + strand, within DDA3937_RS04005 at 894.115 kb on + strand, within DDA3937_RS04005 at 894.115 kb on + strand, within DDA3937_RS04005 at 894.115 kb on + strand, within DDA3937_RS04005 at 894.115 kb on + strand, within DDA3937_RS04005 at 894.116 kb on - strand at 894.116 kb on - strand at 894.116 kb on - strand at 894.116 kb on - strand at 894.116 kb on - strand at 894.116 kb on - strand at 894.116 kb on - strand at 894.150 kb on + strand at 894.151 kb on - strand at 894.151 kb on - strand at 894.172 kb on + strand at 894.191 kb on + strand at 894.342 kb on + strand at 894.508 kb on + strand, within DDA3937_RS04010 at 894.508 kb on + strand, within DDA3937_RS04010 at 894.508 kb on + strand, within DDA3937_RS04010 at 894.509 kb on - strand, within DDA3937_RS04010 at 894.509 kb on - strand, within DDA3937_RS04010 at 894.509 kb on - strand, within DDA3937_RS04010 at 894.526 kb on + strand, within DDA3937_RS04010 at 894.526 kb on + strand, within DDA3937_RS04010 at 894.526 kb on + strand, within DDA3937_RS04010 at 894.526 kb on + strand, within DDA3937_RS04010 at 894.526 kb on + strand, within DDA3937_RS04010 at 894.527 kb on - strand, within DDA3937_RS04010 at 894.527 kb on - strand, within DDA3937_RS04010 at 894.569 kb on + strand, within DDA3937_RS04010 at 894.571 kb on + strand, within DDA3937_RS04010 at 894.572 kb on - strand, within DDA3937_RS04010 at 894.572 kb on - strand, within DDA3937_RS04010 at 894.709 kb on + strand, within DDA3937_RS04010 at 894.710 kb on - strand, within DDA3937_RS04010 at 894.710 kb on - strand, within DDA3937_RS04010 at 894.710 kb on - strand, within DDA3937_RS04010
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 892,583 + -0.6 892,584 - -1.1 892,648 + -1.2 892,648 + -1.5 892,649 - -2.4 892,649 - +1.0 892,649 - +0.6 892,836 + DDA3937_RS03995 0.27 -0.6 892,837 - DDA3937_RS03995 0.27 +1.0 892,876 + DDA3937_RS03995 0.31 -1.5 892,876 + DDA3937_RS03995 0.31 -0.3 892,910 + DDA3937_RS03995 0.35 +0.2 892,910 + DDA3937_RS03995 0.35 +0.6 892,910 + DDA3937_RS03995 0.35 -3.6 893,150 - DDA3937_RS03995 0.60 -0.6 893,150 - DDA3937_RS03995 0.60 +0.0 893,388 + DDA3937_RS03995 0.85 -0.3 893,388 + DDA3937_RS03995 0.85 -2.1 893,389 - DDA3937_RS03995 0.85 -0.8 893,389 - DDA3937_RS03995 0.85 +0.4 893,389 - DDA3937_RS03995 0.85 -0.4 893,389 - DDA3937_RS03995 0.85 -1.3 893,462 + -0.5 893,511 + +1.2 893,577 + -0.1 893,577 + +1.3 893,578 - +0.5 893,578 - -0.4 893,578 - -2.4 893,578 - +0.5 893,578 - -2.8 893,629 + DDA3937_RS04000 0.16 -0.5 893,629 + DDA3937_RS04000 0.16 +0.1 893,630 - DDA3937_RS04000 0.17 +0.3 893,646 + DDA3937_RS04000 0.22 +1.0 893,646 + DDA3937_RS04000 0.22 +1.3 893,646 + DDA3937_RS04000 0.22 -0.4 893,646 + DDA3937_RS04000 0.22 -1.6 893,646 + DDA3937_RS04000 0.22 +1.1 893,646 + DDA3937_RS04000 0.22 -1.2 893,647 - DDA3937_RS04000 0.22 +2.2 893,647 - DDA3937_RS04000 0.22 +1.8 893,647 - DDA3937_RS04000 0.22 -2.0 893,647 - DDA3937_RS04000 0.22 +0.5 893,647 - DDA3937_RS04000 0.22 -0.6 893,687 + DDA3937_RS04000 0.36 -1.1 893,687 + DDA3937_RS04000 0.36 +1.2 893,687 + DDA3937_RS04000 0.36 -1.3 893,687 + DDA3937_RS04000 0.36 +2.4 893,687 + DDA3937_RS04000 0.36 +0.5 893,687 + DDA3937_RS04000 0.36 -1.2 893,688 - DDA3937_RS04000 0.36 -1.6 893,688 - DDA3937_RS04000 0.36 +0.4 893,688 - DDA3937_RS04000 0.36 +1.4 893,870 + +0.9 893,870 + +0.5 893,870 + +0.0 893,870 + +0.1 893,871 - -0.2 893,871 - +0.2 893,871 - -2.3 893,871 - +1.4 893,883 + -0.1 893,908 + DDA3937_RS04005 0.14 -1.6 893,960 + DDA3937_RS04005 0.33 +0.1 894,053 + DDA3937_RS04005 0.67 +0.0 894,113 + DDA3937_RS04005 0.89 -0.7 894,113 + DDA3937_RS04005 0.89 +3.0 894,114 - DDA3937_RS04005 0.89 -2.1 894,114 - DDA3937_RS04005 0.89 +0.7 894,114 - DDA3937_RS04005 0.89 -1.1 894,115 + DDA3937_RS04005 0.89 +1.2 894,115 + DDA3937_RS04005 0.89 +0.9 894,115 + DDA3937_RS04005 0.89 -0.3 894,115 + DDA3937_RS04005 0.89 -1.5 894,115 + DDA3937_RS04005 0.89 +2.1 894,115 + DDA3937_RS04005 0.89 +1.3 894,115 + DDA3937_RS04005 0.89 -1.1 894,115 + DDA3937_RS04005 0.89 -2.6 894,115 + DDA3937_RS04005 0.89 -2.2 894,115 + DDA3937_RS04005 0.89 -0.5 894,116 - +0.8 894,116 - -2.2 894,116 - -1.1 894,116 - -0.6 894,116 - -2.4 894,116 - -2.5 894,116 - -1.0 894,150 + -1.5 894,151 - -2.4 894,151 - +0.1 894,172 + +0.0 894,191 + +1.1 894,342 + +1.3 894,508 + DDA3937_RS04010 0.14 -0.2 894,508 + DDA3937_RS04010 0.14 -1.5 894,508 + DDA3937_RS04010 0.14 -2.1 894,509 - DDA3937_RS04010 0.14 +0.1 894,509 - DDA3937_RS04010 0.14 +1.1 894,509 - DDA3937_RS04010 0.14 +1.0 894,526 + DDA3937_RS04010 0.15 -0.7 894,526 + DDA3937_RS04010 0.15 -1.9 894,526 + DDA3937_RS04010 0.15 +0.1 894,526 + DDA3937_RS04010 0.15 -1.3 894,526 + DDA3937_RS04010 0.15 +0.6 894,527 - DDA3937_RS04010 0.15 -1.0 894,527 - DDA3937_RS04010 0.15 +0.5 894,569 + DDA3937_RS04010 0.17 -1.7 894,571 + DDA3937_RS04010 0.17 -0.8 894,572 - DDA3937_RS04010 0.17 -0.8 894,572 - DDA3937_RS04010 0.17 -0.0 894,709 + DDA3937_RS04010 0.23 +0.6 894,710 - DDA3937_RS04010 0.23 -2.7 894,710 - DDA3937_RS04010 0.23 -1.2 894,710 - DDA3937_RS04010 0.23 -0.1
Or see this region's nucleotide sequence