Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS21890 and DDA3937_RS03965 are separated by 37 nucleotides DDA3937_RS03965 and DDA3937_RS03970 are separated by 630 nucleotides
DDA3937_RS21890: DDA3937_RS21890 - DUF3363 domain-containing protein, at 886,509 to 886,736
_RS21890
DDA3937_RS03965: DDA3937_RS03965 - helix-turn-helix transcriptional regulator, at 886,774 to 887,124
_RS03965
DDA3937_RS03970: DDA3937_RS03970 - helix-turn-helix transcriptional regulator, at 887,755 to 888,093
_RS03970
Position (kb) 886
887
888 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 885.778 kb on - strand at 885.780 kb on - strand at 885.787 kb on - strand at 885.787 kb on - strand at 885.817 kb on - strand at 885.817 kb on - strand at 885.851 kb on - strand at 885.851 kb on - strand at 885.877 kb on - strand at 885.877 kb on - strand at 885.881 kb on + strand at 885.881 kb on + strand at 885.882 kb on - strand at 885.882 kb on - strand at 885.882 kb on - strand at 885.890 kb on - strand at 885.901 kb on + strand at 885.901 kb on + strand at 885.901 kb on + strand at 885.901 kb on + strand at 885.901 kb on + strand at 885.901 kb on + strand at 885.902 kb on - strand at 885.902 kb on - strand at 885.902 kb on - strand at 885.902 kb on - strand at 885.902 kb on - strand at 885.902 kb on - strand at 885.902 kb on - strand at 885.909 kb on + strand at 885.909 kb on + strand at 885.909 kb on + strand at 885.909 kb on + strand at 885.910 kb on - strand at 885.910 kb on - strand at 885.910 kb on - strand at 885.927 kb on + strand at 885.927 kb on + strand at 885.927 kb on + strand at 885.928 kb on - strand at 885.936 kb on + strand at 885.937 kb on - strand at 885.937 kb on - strand at 885.937 kb on - strand at 885.952 kb on - strand at 885.960 kb on + strand at 885.961 kb on - strand at 885.961 kb on - strand at 885.961 kb on - strand at 886.029 kb on - strand at 886.029 kb on - strand at 886.029 kb on - strand at 886.029 kb on - strand at 886.034 kb on + strand at 886.034 kb on + strand at 886.034 kb on + strand at 886.034 kb on + strand at 886.034 kb on + strand at 886.034 kb on + strand at 886.034 kb on + strand at 886.035 kb on - strand at 886.035 kb on - strand at 886.035 kb on - strand at 886.035 kb on - strand at 886.035 kb on - strand at 886.035 kb on - strand at 886.046 kb on - strand at 886.057 kb on + strand at 886.057 kb on + strand at 886.057 kb on + strand at 886.057 kb on + strand at 886.058 kb on - strand at 886.069 kb on + strand at 886.069 kb on + strand at 886.069 kb on + strand at 886.069 kb on + strand at 886.070 kb on - strand at 886.112 kb on - strand at 886.152 kb on - strand at 886.152 kb on - strand at 886.159 kb on + strand at 886.159 kb on + strand at 886.160 kb on - strand at 886.180 kb on + strand at 886.180 kb on + strand at 886.181 kb on - strand at 886.181 kb on - strand at 886.181 kb on - strand at 886.182 kb on + strand at 886.182 kb on + strand at 886.182 kb on + strand at 886.182 kb on + strand at 886.182 kb on + strand at 886.182 kb on + strand at 886.182 kb on + strand at 886.182 kb on + strand at 886.183 kb on - strand at 886.183 kb on - strand at 886.183 kb on - strand at 886.183 kb on - strand at 886.183 kb on - strand at 886.183 kb on - strand at 886.266 kb on + strand at 886.266 kb on + strand at 886.267 kb on - strand at 886.267 kb on - strand at 886.267 kb on - strand at 886.267 kb on - strand at 886.270 kb on + strand at 886.270 kb on + strand at 886.270 kb on + strand at 886.271 kb on - strand at 886.271 kb on - strand at 886.271 kb on - strand at 886.291 kb on - strand at 886.294 kb on + strand at 886.294 kb on + strand at 886.294 kb on + strand at 886.294 kb on + strand at 886.295 kb on - strand at 886.330 kb on + strand at 886.331 kb on - strand at 886.351 kb on + strand at 886.351 kb on + strand at 886.351 kb on + strand at 886.351 kb on + strand at 886.351 kb on + strand at 886.351 kb on + strand at 886.351 kb on + strand at 886.352 kb on - strand at 886.352 kb on - strand at 886.352 kb on - strand at 886.352 kb on - strand at 886.352 kb on - strand at 886.352 kb on - strand at 886.364 kb on + strand at 886.364 kb on + strand at 886.365 kb on - strand at 886.365 kb on - strand at 886.373 kb on + strand at 886.373 kb on + strand at 886.373 kb on + strand at 886.374 kb on - strand at 886.391 kb on + strand at 886.391 kb on + strand at 886.391 kb on + strand at 886.392 kb on - strand at 886.395 kb on + strand at 886.395 kb on + strand at 886.395 kb on + strand at 886.395 kb on + strand at 886.395 kb on + strand at 886.395 kb on + strand at 886.395 kb on + strand at 886.395 kb on + strand at 886.395 kb on + strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.398 kb on - strand at 886.398 kb on - strand at 886.406 kb on + strand at 886.438 kb on - strand at 886.438 kb on - strand at 886.438 kb on - strand at 886.441 kb on + strand at 886.442 kb on - strand at 886.490 kb on + strand at 886.490 kb on + strand at 886.490 kb on + strand at 886.490 kb on + strand at 886.491 kb on - strand at 886.500 kb on + strand at 886.500 kb on + strand at 886.501 kb on - strand at 886.501 kb on - strand at 886.504 kb on + strand at 886.504 kb on + strand at 886.505 kb on - strand at 886.510 kb on + strand at 886.510 kb on + strand at 886.511 kb on - strand at 886.511 kb on - strand at 886.515 kb on + strand at 886.516 kb on - strand at 886.541 kb on + strand, within DDA3937_RS21890 at 886.541 kb on + strand, within DDA3937_RS21890 at 886.541 kb on + strand, within DDA3937_RS21890 at 886.541 kb on + strand, within DDA3937_RS21890 at 886.542 kb on - strand, within DDA3937_RS21890 at 886.542 kb on - strand, within DDA3937_RS21890 at 886.554 kb on + strand, within DDA3937_RS21890 at 886.554 kb on + strand, within DDA3937_RS21890 at 886.554 kb on + strand, within DDA3937_RS21890 at 886.555 kb on - strand, within DDA3937_RS21890 at 886.654 kb on + strand, within DDA3937_RS21890 at 886.682 kb on + strand, within DDA3937_RS21890 at 886.685 kb on + strand, within DDA3937_RS21890 at 886.775 kb on + strand at 886.776 kb on - strand at 886.776 kb on - strand at 886.786 kb on - strand at 886.786 kb on - strand at 886.830 kb on - strand, within DDA3937_RS03965 at 886.868 kb on + strand, within DDA3937_RS03965 at 886.868 kb on + strand, within DDA3937_RS03965 at 886.868 kb on + strand, within DDA3937_RS03965 at 886.869 kb on - strand, within DDA3937_RS03965 at 886.874 kb on + strand, within DDA3937_RS03965 at 886.875 kb on - strand, within DDA3937_RS03965 at 887.067 kb on + strand, within DDA3937_RS03965 at 887.067 kb on + strand, within DDA3937_RS03965 at 887.068 kb on - strand, within DDA3937_RS03965 at 887.098 kb on + strand at 887.185 kb on - strand at 887.227 kb on + strand at 887.227 kb on + strand at 887.227 kb on + strand at 887.227 kb on + strand at 887.227 kb on + strand at 887.227 kb on + strand at 887.227 kb on + strand at 887.227 kb on + strand at 887.228 kb on - strand at 887.228 kb on - strand at 887.228 kb on - strand at 887.228 kb on - strand at 887.291 kb on + strand at 887.391 kb on + strand at 887.391 kb on + strand at 887.391 kb on + strand at 887.391 kb on + strand at 887.391 kb on + strand at 887.391 kb on + strand at 887.391 kb on + strand at 887.391 kb on + strand at 887.391 kb on + strand at 887.391 kb on + strand at 887.391 kb on + strand at 887.394 kb on + strand at 887.394 kb on + strand at 887.394 kb on + strand at 887.394 kb on + strand at 887.395 kb on - strand at 887.395 kb on - strand at 887.395 kb on - strand at 887.395 kb on - strand at 887.395 kb on - strand at 887.450 kb on + strand at 887.450 kb on + strand at 887.450 kb on + strand at 887.450 kb on + strand at 887.470 kb on + strand at 887.483 kb on + strand at 887.483 kb on + strand at 887.483 kb on + strand at 887.483 kb on + strand at 887.483 kb on + strand at 887.484 kb on - strand at 887.484 kb on - strand at 887.484 kb on - strand at 887.484 kb on - strand at 887.487 kb on + strand at 887.487 kb on + strand at 887.487 kb on + strand at 887.488 kb on - strand at 887.488 kb on - strand at 887.488 kb on - strand at 887.488 kb on - strand at 887.488 kb on - strand at 887.488 kb on - strand at 887.499 kb on + strand at 887.500 kb on - strand at 887.618 kb on + strand at 887.618 kb on + strand at 887.619 kb on - strand at 887.619 kb on - strand at 887.641 kb on + strand at 887.657 kb on + strand at 887.658 kb on - strand at 887.658 kb on - strand at 887.678 kb on + strand at 887.679 kb on - strand at 887.679 kb on - strand at 887.679 kb on - strand at 887.679 kb on - strand at 887.710 kb on - strand at 887.714 kb on + strand at 887.714 kb on + strand at 887.718 kb on + strand at 887.718 kb on + strand at 887.718 kb on + strand at 887.718 kb on + strand at 887.719 kb on - strand at 887.741 kb on - strand at 887.825 kb on + strand, within DDA3937_RS03970 at 887.826 kb on - strand, within DDA3937_RS03970 at 887.864 kb on + strand, within DDA3937_RS03970 at 887.865 kb on - strand, within DDA3937_RS03970 at 887.870 kb on + strand, within DDA3937_RS03970 at 887.870 kb on + strand, within DDA3937_RS03970 at 887.870 kb on + strand, within DDA3937_RS03970 at 887.871 kb on - strand, within DDA3937_RS03970 at 887.871 kb on - strand, within DDA3937_RS03970 at 887.871 kb on - strand, within DDA3937_RS03970 at 887.871 kb on - strand, within DDA3937_RS03970 at 887.871 kb on - strand, within DDA3937_RS03970 at 887.871 kb on - strand, within DDA3937_RS03970 at 887.946 kb on - strand, within DDA3937_RS03970 at 888.013 kb on + strand, within DDA3937_RS03970 at 888.013 kb on + strand, within DDA3937_RS03970 at 888.030 kb on + strand, within DDA3937_RS03970 at 888.031 kb on - strand, within DDA3937_RS03970 at 888.076 kb on + strand at 888.076 kb on + strand at 888.077 kb on - strand at 888.094 kb on + strand at 888.094 kb on + strand at 888.094 kb on + strand at 888.094 kb on + strand at 888.094 kb on + strand at 888.094 kb on + strand at 888.094 kb on + strand at 888.095 kb on - strand at 888.095 kb on - strand at 888.095 kb on - strand at 888.095 kb on - strand at 888.095 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 885,778 - -0.5 885,780 - -2.0 885,787 - -0.1 885,787 - -0.4 885,817 - +0.2 885,817 - -1.2 885,851 - -1.5 885,851 - -0.5 885,877 - -0.6 885,877 - -0.6 885,881 + -2.4 885,881 + -2.5 885,882 - -0.8 885,882 - -1.3 885,882 - -1.5 885,890 - +2.1 885,901 + +0.5 885,901 + -0.8 885,901 + -1.0 885,901 + -1.6 885,901 + -2.6 885,901 + -1.5 885,902 - -1.7 885,902 - -0.3 885,902 - -0.8 885,902 - -1.7 885,902 - -1.7 885,902 - -1.9 885,902 - +2.0 885,909 + -2.4 885,909 + -0.4 885,909 + -0.6 885,909 + +0.1 885,910 - +2.4 885,910 - -1.4 885,910 - -0.6 885,927 + -1.7 885,927 + -1.2 885,927 + -0.1 885,928 - -0.1 885,936 + +1.5 885,937 - -2.9 885,937 - -2.1 885,937 - +1.6 885,952 - -1.4 885,960 + -2.5 885,961 - +0.3 885,961 - -2.0 885,961 - -1.8 886,029 - -1.3 886,029 - -0.8 886,029 - -0.1 886,029 - -1.7 886,034 + -0.1 886,034 + +0.8 886,034 + -0.3 886,034 + -2.7 886,034 + -0.3 886,034 + -1.9 886,034 + -0.3 886,035 - -1.2 886,035 - -1.5 886,035 - -0.6 886,035 - -0.4 886,035 - +1.6 886,035 - +1.0 886,046 - +0.1 886,057 + -0.5 886,057 + -1.0 886,057 + -0.7 886,057 + -1.2 886,058 - -0.7 886,069 + -1.6 886,069 + -0.3 886,069 + -0.5 886,069 + -1.8 886,070 - +0.0 886,112 - +1.8 886,152 - -1.4 886,152 - +1.7 886,159 + +0.0 886,159 + +0.4 886,160 - -2.4 886,180 + +0.8 886,180 + -0.3 886,181 - -2.1 886,181 - +0.6 886,181 - +0.9 886,182 + +0.0 886,182 + -0.5 886,182 + +0.8 886,182 + -0.9 886,182 + -0.5 886,182 + -2.2 886,182 + +0.6 886,182 + -0.1 886,183 - +0.9 886,183 - +0.0 886,183 - +3.8 886,183 - -0.4 886,183 - -1.8 886,183 - -0.5 886,266 + -2.0 886,266 + -1.0 886,267 - -1.3 886,267 - +0.4 886,267 - -1.2 886,267 - -2.8 886,270 + -1.7 886,270 + -1.5 886,270 + -4.2 886,271 - -2.0 886,271 - -2.2 886,271 - +0.6 886,291 - -1.5 886,294 + -0.8 886,294 + -2.2 886,294 + -1.2 886,294 + -1.6 886,295 - -2.5 886,330 + -0.3 886,331 - -0.6 886,351 + -1.3 886,351 + -1.7 886,351 + -1.5 886,351 + +0.3 886,351 + -3.0 886,351 + +1.2 886,351 + +0.3 886,352 - +0.6 886,352 - -1.0 886,352 - +0.3 886,352 - -2.5 886,352 - -2.7 886,352 - -1.2 886,364 + -0.9 886,364 + +1.5 886,365 - -1.7 886,365 - -1.6 886,373 + -1.2 886,373 + -0.5 886,373 + -2.0 886,374 - -1.9 886,391 + -3.0 886,391 + +1.3 886,391 + -1.2 886,392 - +2.0 886,395 + -0.1 886,395 + -1.3 886,395 + -1.0 886,395 + -1.9 886,395 + -0.1 886,395 + +0.3 886,395 + -1.7 886,395 + -2.7 886,395 + -2.2 886,396 - -0.4 886,396 - -1.0 886,396 - -0.2 886,396 - -1.7 886,396 - -0.7 886,396 - -0.6 886,396 - +0.1 886,396 - -1.3 886,396 - -0.8 886,396 - -0.3 886,396 - +0.8 886,396 - -2.5 886,398 - +0.5 886,398 - +1.0 886,406 + +0.5 886,438 - -1.6 886,438 - -3.1 886,438 - -1.5 886,441 + -0.2 886,442 - -1.8 886,490 + -1.0 886,490 + -3.0 886,490 + +0.9 886,490 + -0.8 886,491 - +0.1 886,500 + +0.7 886,500 + -0.0 886,501 - +1.1 886,501 - -1.4 886,504 + -2.1 886,504 + -2.6 886,505 - +1.5 886,510 + -2.5 886,510 + -0.6 886,511 - -1.1 886,511 - -0.8 886,515 + +0.4 886,516 - +0.4 886,541 + DDA3937_RS21890 0.14 -2.8 886,541 + DDA3937_RS21890 0.14 -2.1 886,541 + DDA3937_RS21890 0.14 -1.8 886,541 + DDA3937_RS21890 0.14 -0.8 886,542 - DDA3937_RS21890 0.14 +0.0 886,542 - DDA3937_RS21890 0.14 +2.0 886,554 + DDA3937_RS21890 0.20 -2.3 886,554 + DDA3937_RS21890 0.20 +2.8 886,554 + DDA3937_RS21890 0.20 -1.2 886,555 - DDA3937_RS21890 0.20 -1.2 886,654 + DDA3937_RS21890 0.64 -1.8 886,682 + DDA3937_RS21890 0.76 -0.5 886,685 + DDA3937_RS21890 0.77 +0.1 886,775 + +0.0 886,776 - -0.1 886,776 - -3.1 886,786 - -0.1 886,786 - -0.6 886,830 - DDA3937_RS03965 0.16 -0.6 886,868 + DDA3937_RS03965 0.27 +0.4 886,868 + DDA3937_RS03965 0.27 -1.3 886,868 + DDA3937_RS03965 0.27 -0.3 886,869 - DDA3937_RS03965 0.27 -0.9 886,874 + DDA3937_RS03965 0.28 -1.5 886,875 - DDA3937_RS03965 0.29 -1.1 887,067 + DDA3937_RS03965 0.83 -2.8 887,067 + DDA3937_RS03965 0.83 -1.6 887,068 - DDA3937_RS03965 0.84 -1.6 887,098 + -1.4 887,185 - -1.0 887,227 + +1.0 887,227 + -0.3 887,227 + +1.0 887,227 + +1.6 887,227 + -0.9 887,227 + -1.0 887,227 + -1.0 887,227 + -1.0 887,228 - -0.1 887,228 - +0.7 887,228 - +0.4 887,228 - -1.6 887,291 + -1.0 887,391 + -0.7 887,391 + -0.7 887,391 + -1.3 887,391 + -0.9 887,391 + -0.7 887,391 + +0.4 887,391 + -0.7 887,391 + -0.7 887,391 + +0.1 887,391 + -1.9 887,391 + -1.2 887,394 + -1.3 887,394 + +0.8 887,394 + +0.0 887,394 + +0.7 887,395 - +0.3 887,395 - +0.4 887,395 - +0.0 887,395 - +1.7 887,395 - +0.4 887,450 + -2.1 887,450 + +1.2 887,450 + -2.5 887,450 + +0.2 887,470 + +2.0 887,483 + +0.9 887,483 + +0.3 887,483 + +0.4 887,483 + -3.5 887,483 + -0.8 887,484 - -0.4 887,484 - -1.5 887,484 - +0.4 887,484 - -0.7 887,487 + -0.4 887,487 + -1.3 887,487 + +0.2 887,488 - -0.7 887,488 - +1.4 887,488 - -2.6 887,488 - -2.2 887,488 - +0.7 887,488 - +2.0 887,499 + -0.2 887,500 - -2.2 887,618 + -0.3 887,618 + -0.7 887,619 - -0.8 887,619 - +0.0 887,641 + -0.2 887,657 + -1.0 887,658 - -1.8 887,658 - +1.0 887,678 + -0.3 887,679 - -2.4 887,679 - -2.6 887,679 - -1.5 887,679 - -1.2 887,710 - +1.7 887,714 + -0.3 887,714 + -0.8 887,718 + -0.7 887,718 + -0.5 887,718 + -0.5 887,718 + -0.0 887,719 - -0.3 887,741 - +0.4 887,825 + DDA3937_RS03970 0.21 -1.7 887,826 - DDA3937_RS03970 0.21 -0.6 887,864 + DDA3937_RS03970 0.32 +0.5 887,865 - DDA3937_RS03970 0.32 -2.2 887,870 + DDA3937_RS03970 0.34 -1.2 887,870 + DDA3937_RS03970 0.34 -2.8 887,870 + DDA3937_RS03970 0.34 -0.7 887,871 - DDA3937_RS03970 0.34 -2.3 887,871 - DDA3937_RS03970 0.34 -0.9 887,871 - DDA3937_RS03970 0.34 -1.1 887,871 - DDA3937_RS03970 0.34 -0.4 887,871 - DDA3937_RS03970 0.34 -0.6 887,871 - DDA3937_RS03970 0.34 -0.2 887,946 - DDA3937_RS03970 0.56 -0.3 888,013 + DDA3937_RS03970 0.76 -1.0 888,013 + DDA3937_RS03970 0.76 +0.6 888,030 + DDA3937_RS03970 0.81 -1.5 888,031 - DDA3937_RS03970 0.81 -0.4 888,076 + -2.0 888,076 + -0.2 888,077 - -1.6 888,094 + -2.2 888,094 + -0.4 888,094 + -0.6 888,094 + +2.5 888,094 + +0.7 888,094 + -0.6 888,094 + -1.2 888,095 - -0.6 888,095 - +0.3 888,095 - -2.1 888,095 - +0.4 888,095 - -1.0
Or see this region's nucleotide sequence