Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS03495

Experiment: PDB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS03490 and DDA3937_RS03495 are separated by 931 nucleotidesDDA3937_RS03495 and DDA3937_RS03500 are separated by 126 nucleotides DDA3937_RS03490: DDA3937_RS03490 - TonB-dependent siderophore receptor, at 765,345 to 767,732 _RS03490 DDA3937_RS03495: DDA3937_RS03495 - mandelate racemase family protein, at 768,664 to 769,818 _RS03495 DDA3937_RS03500: DDA3937_RS03500 - ABC transporter substrate-binding protein, at 769,945 to 771,555 _RS03500 Position (kb) 768 769 770Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 767.682 kb on + strandat 767.682 kb on + strandat 767.682 kb on + strandat 767.683 kb on - strandat 767.683 kb on - strandat 767.683 kb on - strandat 767.683 kb on - strandat 767.685 kb on + strandat 767.685 kb on + strandat 767.702 kb on + strandat 767.702 kb on + strandat 767.702 kb on + strandat 767.702 kb on + strandat 767.703 kb on - strandat 767.705 kb on + strandat 767.721 kb on + strandat 767.722 kb on - strandat 767.730 kb on + strandat 767.730 kb on + strandat 767.733 kb on + strandat 767.733 kb on + strandat 767.733 kb on + strandat 767.734 kb on - strandat 767.734 kb on - strandat 767.734 kb on - strandat 767.735 kb on + strandat 767.735 kb on + strandat 767.735 kb on + strandat 767.735 kb on + strandat 767.736 kb on - strandat 767.745 kb on - strandat 767.791 kb on + strandat 767.791 kb on + strandat 767.791 kb on + strandat 767.791 kb on + strandat 767.792 kb on - strandat 767.794 kb on + strandat 767.794 kb on + strandat 767.794 kb on + strandat 767.794 kb on + strandat 767.795 kb on - strandat 767.795 kb on - strandat 767.799 kb on + strandat 767.799 kb on + strandat 767.800 kb on - strandat 767.903 kb on - strandat 767.903 kb on - strandat 767.915 kb on - strandat 767.915 kb on - strandat 767.915 kb on - strandat 767.921 kb on - strandat 767.998 kb on + strandat 767.998 kb on + strandat 767.998 kb on + strandat 767.998 kb on + strandat 767.998 kb on + strandat 767.998 kb on + strandat 768.067 kb on - strandat 768.090 kb on + strandat 768.091 kb on - strandat 768.091 kb on - strandat 768.094 kb on + strandat 768.094 kb on + strandat 768.094 kb on + strandat 768.124 kb on - strandat 768.188 kb on - strandat 768.335 kb on - strandat 768.335 kb on - strandat 768.337 kb on + strandat 768.337 kb on + strandat 768.338 kb on - strandat 768.339 kb on + strandat 768.357 kb on + strandat 768.364 kb on - strandat 768.364 kb on - strandat 768.392 kb on + strandat 768.550 kb on - strandat 768.551 kb on + strandat 768.570 kb on - strandat 768.577 kb on + strandat 768.578 kb on - strandat 768.584 kb on + strandat 768.584 kb on + strandat 768.584 kb on + strandat 768.584 kb on + strandat 768.585 kb on - strandat 768.585 kb on - strandat 768.586 kb on + strandat 768.587 kb on - strandat 768.587 kb on - strandat 768.587 kb on - strandat 768.587 kb on - strandat 768.604 kb on + strandat 768.615 kb on + strandat 768.641 kb on + strandat 768.642 kb on - strandat 768.642 kb on - strandat 768.646 kb on - strandat 768.658 kb on - strandat 768.671 kb on + strandat 768.672 kb on - strandat 768.700 kb on + strandat 768.700 kb on + strandat 768.700 kb on + strandat 768.700 kb on + strandat 768.700 kb on + strandat 768.774 kb on - strandat 769.024 kb on + strand, within DDA3937_RS03495at 769.024 kb on + strand, within DDA3937_RS03495at 769.024 kb on + strand, within DDA3937_RS03495at 769.024 kb on + strand, within DDA3937_RS03495at 769.024 kb on + strand, within DDA3937_RS03495at 769.025 kb on - strand, within DDA3937_RS03495at 769.025 kb on - strand, within DDA3937_RS03495at 769.026 kb on + strand, within DDA3937_RS03495at 769.315 kb on + strand, within DDA3937_RS03495at 769.316 kb on - strand, within DDA3937_RS03495at 769.316 kb on - strand, within DDA3937_RS03495at 769.316 kb on - strand, within DDA3937_RS03495at 769.776 kb on + strandat 769.776 kb on + strandat 769.776 kb on + strandat 769.776 kb on + strandat 769.816 kb on + strandat 769.858 kb on - strandat 769.873 kb on + strandat 769.874 kb on - strandat 769.921 kb on + strandat 769.921 kb on + strandat 769.921 kb on + strandat 769.921 kb on + strandat 769.922 kb on - strandat 769.922 kb on - strandat 769.922 kb on - strandat 769.944 kb on - strandat 769.961 kb on + strandat 769.961 kb on + strandat 769.961 kb on + strandat 769.961 kb on + strandat 769.962 kb on - strandat 769.962 kb on - strandat 769.992 kb on + strandat 769.992 kb on + strandat 769.993 kb on - strandat 769.993 kb on - strandat 770.117 kb on + strand, within DDA3937_RS03500at 770.117 kb on + strand, within DDA3937_RS03500at 770.118 kb on - strand, within DDA3937_RS03500at 770.131 kb on + strand, within DDA3937_RS03500at 770.132 kb on - strand, within DDA3937_RS03500at 770.178 kb on - strand, within DDA3937_RS03500at 770.430 kb on + strand, within DDA3937_RS03500at 770.445 kb on + strand, within DDA3937_RS03500at 770.445 kb on + strand, within DDA3937_RS03500at 770.445 kb on + strand, within DDA3937_RS03500at 770.445 kb on + strand, within DDA3937_RS03500at 770.446 kb on - strand, within DDA3937_RS03500at 770.446 kb on - strand, within DDA3937_RS03500at 770.446 kb on - strand, within DDA3937_RS03500at 770.452 kb on + strand, within DDA3937_RS03500at 770.452 kb on + strand, within DDA3937_RS03500at 770.764 kb on - strand, within DDA3937_RS03500at 770.772 kb on + strand, within DDA3937_RS03500at 770.812 kb on + strand, within DDA3937_RS03500at 770.812 kb on + strand, within DDA3937_RS03500at 770.812 kb on + strand, within DDA3937_RS03500at 770.813 kb on - strand, within DDA3937_RS03500at 770.815 kb on + strand, within DDA3937_RS03500at 770.815 kb on + strand, within DDA3937_RS03500at 770.815 kb on + strand, within DDA3937_RS03500at 770.816 kb on - strand, within DDA3937_RS03500at 770.816 kb on - strand, within DDA3937_RS03500at 770.816 kb on - strand, within DDA3937_RS03500

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PDB
remove
767,682 + -1.6
767,682 + -1.2
767,682 + -0.3
767,683 - -2.0
767,683 - -2.1
767,683 - -0.2
767,683 - -0.2
767,685 + +0.8
767,685 + -2.4
767,702 + -0.4
767,702 + -0.9
767,702 + +0.2
767,702 + +2.3
767,703 - +0.0
767,705 + -1.4
767,721 + +0.2
767,722 - -1.6
767,730 + +0.3
767,730 + -1.9
767,733 + +1.4
767,733 + -1.3
767,733 + -0.3
767,734 - -0.6
767,734 - -0.8
767,734 - -0.8
767,735 + -2.1
767,735 + -0.8
767,735 + +0.9
767,735 + +0.4
767,736 - -1.2
767,745 - -1.0
767,791 + +1.8
767,791 + +0.5
767,791 + +0.3
767,791 + -0.8
767,792 - +1.4
767,794 + +0.4
767,794 + -1.0
767,794 + -1.4
767,794 + -0.4
767,795 - +1.4
767,795 - -0.8
767,799 + +0.4
767,799 + -2.1
767,800 - -0.9
767,903 - +3.0
767,903 - -2.6
767,915 - +1.2
767,915 - +0.5
767,915 - +2.6
767,921 - -1.9
767,998 + -0.7
767,998 + +0.9
767,998 + +1.3
767,998 + +1.0
767,998 + +1.0
767,998 + -0.2
768,067 - -2.4
768,090 + +0.4
768,091 - -0.9
768,091 - -0.1
768,094 + -1.1
768,094 + -1.0
768,094 + -0.9
768,124 - -0.2
768,188 - -1.6
768,335 - -1.4
768,335 - -0.8
768,337 + +0.4
768,337 + +0.8
768,338 - +2.0
768,339 + +2.0
768,357 + -0.0
768,364 - -1.2
768,364 - +2.0
768,392 + +2.0
768,550 - -0.3
768,551 + +0.7
768,570 - -1.8
768,577 + -1.4
768,578 - -0.9
768,584 + -2.4
768,584 + +1.0
768,584 + -2.6
768,584 + +0.4
768,585 - +1.0
768,585 - -0.6
768,586 + +0.6
768,587 - -1.0
768,587 - +0.7
768,587 - +0.4
768,587 - -0.4
768,604 + -0.6
768,615 + -1.3
768,641 + +1.4
768,642 - +1.3
768,642 - -3.1
768,646 - -1.9
768,658 - -1.0
768,671 + +0.3
768,672 - +0.7
768,700 + -1.0
768,700 + -4.0
768,700 + -0.1
768,700 + +2.4
768,700 + -0.5
768,774 - -2.6
769,024 + DDA3937_RS03495 0.31 -2.6
769,024 + DDA3937_RS03495 0.31 -1.1
769,024 + DDA3937_RS03495 0.31 -0.6
769,024 + DDA3937_RS03495 0.31 -1.7
769,024 + DDA3937_RS03495 0.31 -1.0
769,025 - DDA3937_RS03495 0.31 -2.1
769,025 - DDA3937_RS03495 0.31 +2.6
769,026 + DDA3937_RS03495 0.31 -0.3
769,315 + DDA3937_RS03495 0.56 -2.0
769,316 - DDA3937_RS03495 0.56 -4.3
769,316 - DDA3937_RS03495 0.56 -2.3
769,316 - DDA3937_RS03495 0.56 +0.1
769,776 + -2.9
769,776 + -1.5
769,776 + -0.2
769,776 + -2.9
769,816 + -3.4
769,858 - -3.8
769,873 + -2.6
769,874 - -2.4
769,921 + -2.3
769,921 + -2.6
769,921 + +1.1
769,921 + -2.3
769,922 - -2.0
769,922 - +2.0
769,922 - -0.1
769,944 - -2.3
769,961 + +1.2
769,961 + -1.6
769,961 + +0.4
769,961 + +1.6
769,962 - -1.8
769,962 - +0.4
769,992 + +1.0
769,992 + +0.3
769,993 - -1.4
769,993 - +0.1
770,117 + DDA3937_RS03500 0.11 +0.2
770,117 + DDA3937_RS03500 0.11 -0.0
770,118 - DDA3937_RS03500 0.11 -2.9
770,131 + DDA3937_RS03500 0.12 -0.3
770,132 - DDA3937_RS03500 0.12 +0.1
770,178 - DDA3937_RS03500 0.14 -2.1
770,430 + DDA3937_RS03500 0.30 +0.2
770,445 + DDA3937_RS03500 0.31 +1.2
770,445 + DDA3937_RS03500 0.31 -0.3
770,445 + DDA3937_RS03500 0.31 +0.3
770,445 + DDA3937_RS03500 0.31 -1.8
770,446 - DDA3937_RS03500 0.31 -2.8
770,446 - DDA3937_RS03500 0.31 -1.1
770,446 - DDA3937_RS03500 0.31 -0.2
770,452 + DDA3937_RS03500 0.31 +0.9
770,452 + DDA3937_RS03500 0.31 -0.9
770,764 - DDA3937_RS03500 0.51 +0.3
770,772 + DDA3937_RS03500 0.51 -0.1
770,812 + DDA3937_RS03500 0.54 -0.9
770,812 + DDA3937_RS03500 0.54 +0.0
770,812 + DDA3937_RS03500 0.54 -2.5
770,813 - DDA3937_RS03500 0.54 -0.6
770,815 + DDA3937_RS03500 0.54 -2.4
770,815 + DDA3937_RS03500 0.54 +0.4
770,815 + DDA3937_RS03500 0.54 +1.5
770,816 - DDA3937_RS03500 0.54 -1.3
770,816 - DDA3937_RS03500 0.54 -3.1
770,816 - DDA3937_RS03500 0.54 -1.9

Or see this region's nucleotide sequence