Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03425 and DDA3937_RS03430 overlap by 8 nucleotides DDA3937_RS03430 and DDA3937_RS03435 are separated by 5 nucleotides DDA3937_RS03435 and DDA3937_RS03440 are separated by 10 nucleotides
DDA3937_RS03425: DDA3937_RS03425 - ABC transporter substrate-binding protein, at 748,650 to 749,972
_RS03425
DDA3937_RS03430: DDA3937_RS03430 - ABC transporter ATP-binding protein, at 749,965 to 751,044
_RS03430
DDA3937_RS03435: DDA3937_RS03435 - phosphodiesterase, at 751,050 to 751,871
_RS03435
DDA3937_RS03440: DDA3937_RS03440 - carbohydrate ABC transporter permease, at 751,882 to 752,769
_RS03440
Position (kb) 749
750
751
752 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 748.979 kb on - strand, within DDA3937_RS03425 at 748.979 kb on - strand, within DDA3937_RS03425 at 749.126 kb on + strand, within DDA3937_RS03425 at 749.126 kb on + strand, within DDA3937_RS03425 at 749.127 kb on - strand, within DDA3937_RS03425 at 749.208 kb on + strand, within DDA3937_RS03425 at 749.287 kb on + strand, within DDA3937_RS03425 at 749.287 kb on + strand, within DDA3937_RS03425 at 749.287 kb on + strand, within DDA3937_RS03425 at 749.288 kb on - strand, within DDA3937_RS03425 at 749.288 kb on - strand, within DDA3937_RS03425 at 749.290 kb on + strand, within DDA3937_RS03425 at 749.291 kb on - strand, within DDA3937_RS03425 at 749.320 kb on + strand, within DDA3937_RS03425 at 749.320 kb on + strand, within DDA3937_RS03425 at 749.321 kb on - strand, within DDA3937_RS03425 at 749.506 kb on + strand, within DDA3937_RS03425 at 749.506 kb on + strand, within DDA3937_RS03425 at 749.506 kb on + strand, within DDA3937_RS03425 at 749.507 kb on - strand, within DDA3937_RS03425 at 749.507 kb on - strand, within DDA3937_RS03425 at 749.507 kb on - strand, within DDA3937_RS03425 at 749.509 kb on + strand, within DDA3937_RS03425 at 749.509 kb on + strand, within DDA3937_RS03425 at 749.545 kb on + strand, within DDA3937_RS03425 at 749.764 kb on + strand, within DDA3937_RS03425 at 749.765 kb on - strand, within DDA3937_RS03425 at 749.765 kb on - strand, within DDA3937_RS03425 at 749.947 kb on - strand at 749.966 kb on + strand at 749.966 kb on + strand at 749.966 kb on + strand at 749.967 kb on - strand at 749.967 kb on - strand at 749.967 kb on - strand at 749.988 kb on - strand at 749.989 kb on + strand at 749.989 kb on + strand at 749.989 kb on + strand at 749.990 kb on - strand at 749.990 kb on - strand at 749.990 kb on - strand at 750.003 kb on + strand at 750.134 kb on + strand, within DDA3937_RS03430 at 750.134 kb on + strand, within DDA3937_RS03430 at 750.134 kb on + strand, within DDA3937_RS03430 at 750.135 kb on - strand, within DDA3937_RS03430 at 750.292 kb on + strand at 750.292 kb on + strand, within DDA3937_RS03430 at 750.293 kb on - strand, within DDA3937_RS03430 at 750.387 kb on - strand, within DDA3937_RS03430 at 750.485 kb on + strand, within DDA3937_RS03430 at 750.800 kb on + strand, within DDA3937_RS03430 at 750.801 kb on - strand, within DDA3937_RS03430 at 750.801 kb on - strand, within DDA3937_RS03430 at 750.801 kb on - strand, within DDA3937_RS03430 at 751.039 kb on + strand at 751.040 kb on - strand at 751.040 kb on - strand at 751.040 kb on - strand at 751.045 kb on - strand at 751.045 kb on - strand at 751.045 kb on - strand at 751.045 kb on - strand at 751.052 kb on - strand at 751.087 kb on + strand at 751.105 kb on + strand at 751.106 kb on - strand at 751.106 kb on - strand at 751.127 kb on - strand at 751.186 kb on + strand, within DDA3937_RS03435 at 751.187 kb on - strand, within DDA3937_RS03435 at 751.189 kb on + strand, within DDA3937_RS03435 at 751.189 kb on + strand, within DDA3937_RS03435 at 751.189 kb on + strand, within DDA3937_RS03435 at 751.189 kb on + strand, within DDA3937_RS03435 at 751.213 kb on + strand, within DDA3937_RS03435 at 751.213 kb on + strand, within DDA3937_RS03435 at 751.214 kb on - strand, within DDA3937_RS03435 at 751.214 kb on - strand, within DDA3937_RS03435 at 751.304 kb on + strand, within DDA3937_RS03435 at 751.305 kb on - strand, within DDA3937_RS03435 at 751.305 kb on - strand, within DDA3937_RS03435 at 751.424 kb on + strand, within DDA3937_RS03435 at 751.425 kb on - strand, within DDA3937_RS03435 at 751.559 kb on + strand, within DDA3937_RS03435 at 751.560 kb on - strand, within DDA3937_RS03435 at 751.603 kb on + strand, within DDA3937_RS03435 at 751.604 kb on - strand, within DDA3937_RS03435 at 751.604 kb on - strand, within DDA3937_RS03435 at 751.693 kb on + strand, within DDA3937_RS03435 at 751.694 kb on - strand, within DDA3937_RS03435 at 751.694 kb on - strand, within DDA3937_RS03435 at 751.766 kb on + strand, within DDA3937_RS03435 at 751.766 kb on + strand, within DDA3937_RS03435 at 751.766 kb on + strand, within DDA3937_RS03435 at 751.767 kb on - strand, within DDA3937_RS03435 at 751.767 kb on - strand, within DDA3937_RS03435 at 751.817 kb on - strand at 751.888 kb on + strand at 751.889 kb on - strand at 751.936 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 748,979 - DDA3937_RS03425 0.25 -1.0 748,979 - DDA3937_RS03425 0.25 -0.9 749,126 + DDA3937_RS03425 0.36 +0.7 749,126 + DDA3937_RS03425 0.36 +2.5 749,127 - DDA3937_RS03425 0.36 -0.5 749,208 + DDA3937_RS03425 0.42 +0.2 749,287 + DDA3937_RS03425 0.48 -1.1 749,287 + DDA3937_RS03425 0.48 -1.4 749,287 + DDA3937_RS03425 0.48 +0.6 749,288 - DDA3937_RS03425 0.48 -1.8 749,288 - DDA3937_RS03425 0.48 -1.0 749,290 + DDA3937_RS03425 0.48 -0.4 749,291 - DDA3937_RS03425 0.48 -2.1 749,320 + DDA3937_RS03425 0.51 +0.2 749,320 + DDA3937_RS03425 0.51 -0.3 749,321 - DDA3937_RS03425 0.51 +0.2 749,506 + DDA3937_RS03425 0.65 -1.2 749,506 + DDA3937_RS03425 0.65 +0.4 749,506 + DDA3937_RS03425 0.65 +1.0 749,507 - DDA3937_RS03425 0.65 -1.2 749,507 - DDA3937_RS03425 0.65 -1.7 749,507 - DDA3937_RS03425 0.65 +0.2 749,509 + DDA3937_RS03425 0.65 -0.8 749,509 + DDA3937_RS03425 0.65 -1.9 749,545 + DDA3937_RS03425 0.68 +0.2 749,764 + DDA3937_RS03425 0.84 -1.8 749,765 - DDA3937_RS03425 0.84 +0.0 749,765 - DDA3937_RS03425 0.84 +0.0 749,947 - -0.4 749,966 + -0.0 749,966 + -0.7 749,966 + +1.5 749,967 - -0.9 749,967 - -2.5 749,967 - -1.0 749,988 - +0.0 749,989 + +0.6 749,989 + -2.1 749,989 + +0.8 749,990 - -2.8 749,990 - -1.1 749,990 - -1.0 750,003 + +0.5 750,134 + DDA3937_RS03430 0.16 -1.1 750,134 + DDA3937_RS03430 0.16 +1.0 750,134 + DDA3937_RS03430 0.16 +0.9 750,135 - DDA3937_RS03430 0.16 -0.1 750,292 + +0.5 750,292 + DDA3937_RS03430 0.30 -1.0 750,293 - DDA3937_RS03430 0.30 +1.2 750,387 - DDA3937_RS03430 0.39 +1.6 750,485 + DDA3937_RS03430 0.48 +1.7 750,800 + DDA3937_RS03430 0.77 +0.5 750,801 - DDA3937_RS03430 0.77 -1.4 750,801 - DDA3937_RS03430 0.77 +2.9 750,801 - DDA3937_RS03430 0.77 -2.2 751,039 + -2.1 751,040 - -1.5 751,040 - -0.3 751,040 - -1.6 751,045 - -1.4 751,045 - +1.0 751,045 - -0.2 751,045 - +0.0 751,052 - +0.6 751,087 + -1.3 751,105 + +0.0 751,106 - -0.3 751,106 - -1.5 751,127 - -1.1 751,186 + DDA3937_RS03435 0.17 -0.3 751,187 - DDA3937_RS03435 0.17 -1.9 751,189 + DDA3937_RS03435 0.17 -1.2 751,189 + DDA3937_RS03435 0.17 +0.9 751,189 + DDA3937_RS03435 0.17 +2.6 751,189 + DDA3937_RS03435 0.17 -0.7 751,213 + DDA3937_RS03435 0.20 -0.9 751,213 + DDA3937_RS03435 0.20 -0.5 751,214 - DDA3937_RS03435 0.20 -0.2 751,214 - DDA3937_RS03435 0.20 -0.5 751,304 + DDA3937_RS03435 0.31 -1.5 751,305 - DDA3937_RS03435 0.31 +2.7 751,305 - DDA3937_RS03435 0.31 -0.3 751,424 + DDA3937_RS03435 0.45 -0.8 751,425 - DDA3937_RS03435 0.46 -1.0 751,559 + DDA3937_RS03435 0.62 -0.8 751,560 - DDA3937_RS03435 0.62 +0.0 751,603 + DDA3937_RS03435 0.67 -0.7 751,604 - DDA3937_RS03435 0.67 -1.1 751,604 - DDA3937_RS03435 0.67 -1.0 751,693 + DDA3937_RS03435 0.78 -3.6 751,694 - DDA3937_RS03435 0.78 -2.8 751,694 - DDA3937_RS03435 0.78 -0.5 751,766 + DDA3937_RS03435 0.87 -1.0 751,766 + DDA3937_RS03435 0.87 -0.5 751,766 + DDA3937_RS03435 0.87 +1.0 751,767 - DDA3937_RS03435 0.87 +0.2 751,767 - DDA3937_RS03435 0.87 -1.7 751,817 - +0.5 751,888 + -0.9 751,889 - -0.1 751,936 - +0.9
Or see this region's nucleotide sequence