Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03390 and DDA3937_RS03395 are separated by 74 nucleotides DDA3937_RS03395 and DDA3937_RS03400 are separated by 44 nucleotides DDA3937_RS03400 and DDA3937_RS03405 are separated by 660 nucleotides
DDA3937_RS03390: DDA3937_RS03390 - heavy metal sensor histidine kinase, at 741,506 to 742,930
_RS03390
DDA3937_RS03395: DDA3937_RS03395 - methyltransferase, at 743,005 to 743,583
_RS03395
DDA3937_RS03400: DDA3937_RS03400 - hypothetical protein, at 743,628 to 743,852
_RS03400
DDA3937_RS03405: DDA3937_RS03405 - helix-turn-helix transcriptional regulator, at 744,513 to 744,890
_RS03405
Position (kb) 743
744 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 742.749 kb on - strand, within DDA3937_RS03390 at 742.791 kb on + strand at 742.876 kb on + strand at 742.877 kb on - strand at 742.928 kb on + strand at 742.934 kb on - strand at 742.967 kb on - strand at 742.970 kb on - strand at 742.970 kb on - strand at 742.970 kb on - strand at 742.970 kb on - strand at 742.970 kb on - strand at 743.004 kb on + strand at 743.005 kb on - strand at 743.025 kb on + strand at 743.065 kb on + strand, within DDA3937_RS03395 at 743.066 kb on - strand at 743.079 kb on + strand, within DDA3937_RS03395 at 743.100 kb on - strand, within DDA3937_RS03395 at 743.110 kb on - strand, within DDA3937_RS03395 at 743.166 kb on + strand, within DDA3937_RS03395 at 743.166 kb on + strand, within DDA3937_RS03395 at 743.218 kb on - strand, within DDA3937_RS03395 at 743.257 kb on + strand, within DDA3937_RS03395 at 743.257 kb on + strand, within DDA3937_RS03395 at 743.265 kb on + strand, within DDA3937_RS03395 at 743.266 kb on - strand, within DDA3937_RS03395 at 743.346 kb on + strand, within DDA3937_RS03395 at 743.404 kb on - strand, within DDA3937_RS03395 at 743.451 kb on + strand, within DDA3937_RS03395 at 743.470 kb on + strand, within DDA3937_RS03395 at 743.471 kb on - strand, within DDA3937_RS03395 at 743.471 kb on - strand, within DDA3937_RS03395 at 743.471 kb on - strand at 743.471 kb on - strand, within DDA3937_RS03395 at 743.472 kb on + strand, within DDA3937_RS03395 at 743.473 kb on - strand, within DDA3937_RS03395 at 743.473 kb on - strand, within DDA3937_RS03395 at 743.473 kb on - strand, within DDA3937_RS03395 at 743.492 kb on + strand, within DDA3937_RS03395 at 743.492 kb on + strand, within DDA3937_RS03395 at 743.524 kb on - strand at 743.557 kb on + strand at 743.597 kb on + strand at 743.598 kb on - strand at 743.613 kb on - strand at 743.635 kb on + strand at 743.636 kb on - strand at 743.636 kb on - strand at 743.639 kb on + strand at 743.640 kb on - strand at 743.644 kb on + strand at 743.646 kb on + strand at 743.646 kb on + strand at 743.646 kb on + strand at 743.647 kb on - strand at 743.647 kb on - strand at 743.723 kb on + strand, within DDA3937_RS03400 at 743.771 kb on - strand, within DDA3937_RS03400 at 743.771 kb on - strand, within DDA3937_RS03400 at 743.771 kb on - strand, within DDA3937_RS03400 at 743.868 kb on + strand at 743.949 kb on - strand at 743.972 kb on - strand at 743.974 kb on + strand at 743.975 kb on - strand at 743.975 kb on - strand at 744.050 kb on + strand at 744.051 kb on - strand at 744.051 kb on - strand at 744.203 kb on + strand at 744.293 kb on + strand at 744.294 kb on - strand at 744.308 kb on + strand at 744.309 kb on - strand at 744.318 kb on + strand at 744.318 kb on + strand at 744.319 kb on - strand at 744.319 kb on - strand at 744.319 kb on - strand at 744.369 kb on + strand at 744.370 kb on - strand at 744.370 kb on - strand at 744.400 kb on + strand at 744.400 kb on + strand at 744.400 kb on + strand at 744.401 kb on - strand at 744.424 kb on - strand at 744.450 kb on + strand at 744.489 kb on - strand at 744.531 kb on + strand at 744.531 kb on + strand at 744.531 kb on + strand at 744.532 kb on - strand at 744.532 kb on - strand at 744.532 kb on - strand at 744.532 kb on - strand at 744.532 kb on - strand at 744.555 kb on - strand, within DDA3937_RS03405 at 744.555 kb on - strand, within DDA3937_RS03405 at 744.555 kb on - strand, within DDA3937_RS03405 at 744.578 kb on + strand, within DDA3937_RS03405 at 744.629 kb on + strand, within DDA3937_RS03405 at 744.732 kb on - strand, within DDA3937_RS03405 at 744.753 kb on + strand, within DDA3937_RS03405 at 744.754 kb on - strand, within DDA3937_RS03405 at 744.754 kb on - strand, within DDA3937_RS03405 at 744.762 kb on - strand, within DDA3937_RS03405 at 744.794 kb on - strand, within DDA3937_RS03405 at 744.794 kb on - strand, within DDA3937_RS03405
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 742,749 - DDA3937_RS03390 0.87 -1.5 742,791 + +2.5 742,876 + -0.1 742,877 - -3.6 742,928 + +1.3 742,934 - -0.9 742,967 - +0.9 742,970 - +0.1 742,970 - +3.2 742,970 - -1.4 742,970 - -1.6 742,970 - -2.6 743,004 + +1.5 743,005 - -2.3 743,025 + -1.3 743,065 + DDA3937_RS03395 0.10 -0.1 743,066 - +1.1 743,079 + DDA3937_RS03395 0.13 -2.3 743,100 - DDA3937_RS03395 0.16 -1.9 743,110 - DDA3937_RS03395 0.18 +1.3 743,166 + DDA3937_RS03395 0.28 +2.2 743,166 + DDA3937_RS03395 0.28 +1.0 743,218 - DDA3937_RS03395 0.37 -0.8 743,257 + DDA3937_RS03395 0.44 +0.9 743,257 + DDA3937_RS03395 0.44 -0.3 743,265 + DDA3937_RS03395 0.45 -1.9 743,266 - DDA3937_RS03395 0.45 +0.1 743,346 + DDA3937_RS03395 0.59 -2.0 743,404 - DDA3937_RS03395 0.69 -0.4 743,451 + DDA3937_RS03395 0.77 -2.7 743,470 + DDA3937_RS03395 0.80 -0.3 743,471 - DDA3937_RS03395 0.80 -0.4 743,471 - DDA3937_RS03395 0.80 -2.3 743,471 - +1.1 743,471 - DDA3937_RS03395 0.80 -1.5 743,472 + DDA3937_RS03395 0.81 -1.8 743,473 - DDA3937_RS03395 0.81 +2.1 743,473 - DDA3937_RS03395 0.81 -1.1 743,473 - DDA3937_RS03395 0.81 -0.1 743,492 + DDA3937_RS03395 0.84 -1.1 743,492 + DDA3937_RS03395 0.84 -0.9 743,524 - +0.1 743,557 + +0.3 743,597 + +1.1 743,598 - -1.9 743,613 - -0.8 743,635 + +0.7 743,636 - +1.9 743,636 - -0.4 743,639 + +1.7 743,640 - -1.3 743,644 + -1.9 743,646 + -0.1 743,646 + -2.7 743,646 + -0.9 743,647 - -1.5 743,647 - +1.6 743,723 + DDA3937_RS03400 0.42 -0.5 743,771 - DDA3937_RS03400 0.64 +1.1 743,771 - DDA3937_RS03400 0.64 -0.9 743,771 - DDA3937_RS03400 0.64 -2.0 743,868 + -3.2 743,949 - -1.2 743,972 - -3.2 743,974 + -2.9 743,975 - -2.2 743,975 - -1.0 744,050 + -0.3 744,051 - +0.9 744,051 - +0.5 744,203 + -1.9 744,293 + -1.4 744,294 - -0.3 744,308 + +0.2 744,309 - +2.3 744,318 + +0.3 744,318 + -0.7 744,319 - -1.1 744,319 - -2.8 744,319 - -1.6 744,369 + +0.7 744,370 - -0.2 744,370 - -2.0 744,400 + -1.0 744,400 + -1.1 744,400 + -2.2 744,401 - +0.5 744,424 - -2.7 744,450 + +1.8 744,489 - -3.5 744,531 + -1.6 744,531 + -0.9 744,531 + -1.1 744,532 - -3.2 744,532 - -3.2 744,532 - -3.0 744,532 - -0.2 744,532 - +1.4 744,555 - DDA3937_RS03405 0.11 +1.7 744,555 - DDA3937_RS03405 0.11 -0.3 744,555 - DDA3937_RS03405 0.11 -2.1 744,578 + DDA3937_RS03405 0.17 -1.5 744,629 + DDA3937_RS03405 0.31 -0.3 744,732 - DDA3937_RS03405 0.58 -0.6 744,753 + DDA3937_RS03405 0.63 -0.4 744,754 - DDA3937_RS03405 0.64 -2.4 744,754 - DDA3937_RS03405 0.64 -0.1 744,762 - DDA3937_RS03405 0.66 +2.1 744,794 - DDA3937_RS03405 0.74 -1.3 744,794 - DDA3937_RS03405 0.74 -1.0
Or see this region's nucleotide sequence