Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03295 and DDA3937_RS03300 are separated by 262 nucleotides DDA3937_RS03300 and DDA3937_RS03305 are separated by 88 nucleotides DDA3937_RS03305 and DDA3937_RS03310 are separated by 40 nucleotides
DDA3937_RS03295: DDA3937_RS03295 - MHS family MFS transporter, at 718,996 to 720,321
_RS03295
DDA3937_RS03300: DDA3937_RS03300 - site-specific tyrosine recombinase XerD, at 720,584 to 721,483
_RS03300
DDA3937_RS03305: DDA3937_RS03305 - bifunctional protein-disulfide isomerase/oxidoreductase DsbC, at 721,572 to 722,288
_RS03305
DDA3937_RS03310: DDA3937_RS03310 - single-stranded-DNA-specific exonuclease RecJ, at 722,329 to 724,059
_RS03310
Position (kb) 720
721
722 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 719.678 kb on + strand, within DDA3937_RS03295 at 719.679 kb on - strand, within DDA3937_RS03295 at 719.679 kb on - strand, within DDA3937_RS03295 at 719.692 kb on - strand, within DDA3937_RS03295 at 719.692 kb on - strand, within DDA3937_RS03295 at 719.834 kb on + strand, within DDA3937_RS03295 at 719.834 kb on + strand, within DDA3937_RS03295 at 719.835 kb on - strand, within DDA3937_RS03295 at 719.954 kb on - strand, within DDA3937_RS03295 at 719.969 kb on + strand, within DDA3937_RS03295 at 719.970 kb on - strand, within DDA3937_RS03295 at 719.970 kb on - strand, within DDA3937_RS03295 at 719.970 kb on - strand, within DDA3937_RS03295 at 719.992 kb on + strand, within DDA3937_RS03295 at 719.993 kb on - strand, within DDA3937_RS03295 at 719.993 kb on - strand, within DDA3937_RS03295 at 719.993 kb on - strand, within DDA3937_RS03295 at 720.175 kb on + strand, within DDA3937_RS03295 at 720.175 kb on + strand, within DDA3937_RS03295 at 720.197 kb on + strand at 720.197 kb on + strand at 720.197 kb on + strand at 720.197 kb on + strand at 720.197 kb on + strand at 720.197 kb on + strand at 720.197 kb on + strand at 720.197 kb on + strand at 720.198 kb on - strand at 720.198 kb on - strand at 720.198 kb on - strand at 720.198 kb on - strand at 720.198 kb on - strand at 720.198 kb on - strand at 720.198 kb on - strand at 720.198 kb on - strand at 720.198 kb on - strand at 720.198 kb on - strand at 720.297 kb on + strand at 720.321 kb on + strand at 720.359 kb on + strand at 720.359 kb on + strand at 720.359 kb on + strand at 720.359 kb on + strand at 720.359 kb on + strand at 720.359 kb on + strand at 720.359 kb on + strand at 720.359 kb on + strand at 720.360 kb on - strand at 720.360 kb on - strand at 720.360 kb on - strand at 720.360 kb on - strand at 720.360 kb on - strand at 720.360 kb on - strand at 720.365 kb on + strand at 720.451 kb on + strand at 720.451 kb on + strand at 720.527 kb on + strand at 720.541 kb on + strand at 720.542 kb on - strand at 720.839 kb on + strand, within DDA3937_RS03300 at 720.840 kb on - strand, within DDA3937_RS03300 at 720.840 kb on - strand, within DDA3937_RS03300 at 721.185 kb on + strand at 721.275 kb on - strand, within DDA3937_RS03300 at 721.534 kb on + strand at 721.558 kb on - strand at 721.565 kb on + strand at 721.566 kb on - strand at 721.566 kb on - strand at 721.566 kb on - strand at 721.585 kb on + strand at 721.585 kb on + strand at 721.585 kb on + strand at 721.585 kb on + strand at 721.585 kb on + strand at 721.588 kb on + strand at 721.588 kb on + strand at 721.588 kb on + strand at 721.588 kb on + strand at 721.589 kb on - strand at 721.589 kb on - strand at 721.589 kb on - strand at 721.589 kb on - strand at 721.589 kb on - strand at 721.589 kb on - strand at 721.589 kb on - strand at 721.661 kb on - strand, within DDA3937_RS03305 at 721.661 kb on - strand, within DDA3937_RS03305 at 721.661 kb on - strand, within DDA3937_RS03305 at 721.661 kb on - strand, within DDA3937_RS03305 at 721.746 kb on + strand, within DDA3937_RS03305 at 721.746 kb on + strand, within DDA3937_RS03305 at 721.746 kb on + strand, within DDA3937_RS03305 at 721.746 kb on + strand, within DDA3937_RS03305 at 721.746 kb on + strand, within DDA3937_RS03305 at 721.746 kb on + strand, within DDA3937_RS03305 at 721.746 kb on + strand, within DDA3937_RS03305 at 721.746 kb on + strand, within DDA3937_RS03305 at 721.746 kb on + strand, within DDA3937_RS03305 at 721.746 kb on + strand, within DDA3937_RS03305 at 721.746 kb on + strand, within DDA3937_RS03305 at 721.746 kb on + strand, within DDA3937_RS03305 at 721.746 kb on + strand, within DDA3937_RS03305 at 721.746 kb on + strand at 721.747 kb on - strand, within DDA3937_RS03305 at 721.747 kb on - strand, within DDA3937_RS03305 at 721.747 kb on - strand, within DDA3937_RS03305 at 721.747 kb on - strand, within DDA3937_RS03305 at 721.747 kb on - strand, within DDA3937_RS03305 at 721.747 kb on - strand, within DDA3937_RS03305 at 721.747 kb on - strand, within DDA3937_RS03305 at 721.748 kb on + strand, within DDA3937_RS03305 at 721.748 kb on + strand, within DDA3937_RS03305 at 721.749 kb on - strand at 721.788 kb on + strand, within DDA3937_RS03305 at 721.788 kb on + strand, within DDA3937_RS03305 at 721.788 kb on + strand, within DDA3937_RS03305 at 721.788 kb on + strand, within DDA3937_RS03305 at 721.788 kb on + strand, within DDA3937_RS03305 at 721.789 kb on - strand, within DDA3937_RS03305 at 721.789 kb on - strand, within DDA3937_RS03305 at 721.789 kb on - strand at 721.789 kb on - strand, within DDA3937_RS03305 at 721.789 kb on - strand, within DDA3937_RS03305 at 721.875 kb on + strand, within DDA3937_RS03305 at 721.875 kb on + strand, within DDA3937_RS03305 at 721.876 kb on - strand, within DDA3937_RS03305 at 721.877 kb on + strand, within DDA3937_RS03305 at 721.877 kb on + strand, within DDA3937_RS03305 at 721.922 kb on + strand at 721.922 kb on + strand, within DDA3937_RS03305 at 721.922 kb on + strand, within DDA3937_RS03305 at 721.922 kb on + strand, within DDA3937_RS03305 at 721.922 kb on + strand at 721.923 kb on - strand, within DDA3937_RS03305 at 721.923 kb on - strand, within DDA3937_RS03305 at 721.923 kb on - strand, within DDA3937_RS03305 at 721.965 kb on + strand, within DDA3937_RS03305 at 721.966 kb on - strand, within DDA3937_RS03305 at 721.966 kb on - strand, within DDA3937_RS03305 at 721.966 kb on - strand, within DDA3937_RS03305 at 721.992 kb on + strand, within DDA3937_RS03305 at 722.091 kb on - strand, within DDA3937_RS03305 at 722.123 kb on + strand, within DDA3937_RS03305 at 722.123 kb on + strand, within DDA3937_RS03305 at 722.124 kb on - strand, within DDA3937_RS03305 at 722.124 kb on - strand, within DDA3937_RS03305 at 722.124 kb on - strand, within DDA3937_RS03305 at 722.303 kb on + strand at 722.412 kb on - strand at 722.412 kb on - strand at 722.413 kb on + strand at 722.414 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 719,678 + DDA3937_RS03295 0.51 -0.1 719,679 - DDA3937_RS03295 0.52 -1.1 719,679 - DDA3937_RS03295 0.52 -1.7 719,692 - DDA3937_RS03295 0.52 -0.2 719,692 - DDA3937_RS03295 0.52 +2.1 719,834 + DDA3937_RS03295 0.63 +0.4 719,834 + DDA3937_RS03295 0.63 -0.1 719,835 - DDA3937_RS03295 0.63 +0.0 719,954 - DDA3937_RS03295 0.72 +1.1 719,969 + DDA3937_RS03295 0.73 +1.5 719,970 - DDA3937_RS03295 0.73 -2.3 719,970 - DDA3937_RS03295 0.73 -0.2 719,970 - DDA3937_RS03295 0.73 +0.1 719,992 + DDA3937_RS03295 0.75 +1.9 719,993 - DDA3937_RS03295 0.75 -1.0 719,993 - DDA3937_RS03295 0.75 -0.5 719,993 - DDA3937_RS03295 0.75 -0.4 720,175 + DDA3937_RS03295 0.89 +0.6 720,175 + DDA3937_RS03295 0.89 -0.3 720,197 + +1.6 720,197 + +0.8 720,197 + -2.9 720,197 + -1.8 720,197 + +1.3 720,197 + -0.4 720,197 + -0.2 720,197 + -1.4 720,198 - -2.3 720,198 - -1.4 720,198 - +0.7 720,198 - +1.1 720,198 - -0.6 720,198 - -1.3 720,198 - -1.9 720,198 - -2.8 720,198 - +0.4 720,198 - -0.1 720,297 + -0.3 720,321 + +0.8 720,359 + +0.1 720,359 + +1.1 720,359 + -0.5 720,359 + +2.3 720,359 + -1.8 720,359 + +1.1 720,359 + +0.7 720,359 + -0.9 720,360 - +0.7 720,360 - -2.9 720,360 - -0.5 720,360 - +0.4 720,360 - -1.6 720,360 - -0.1 720,365 + +1.7 720,451 + +2.2 720,451 + +1.2 720,527 + +0.9 720,541 + -1.7 720,542 - +2.9 720,839 + DDA3937_RS03300 0.28 -0.3 720,840 - DDA3937_RS03300 0.28 -0.3 720,840 - DDA3937_RS03300 0.28 -0.5 721,185 + -0.3 721,275 - DDA3937_RS03300 0.77 -0.4 721,534 + -0.5 721,558 - -1.9 721,565 + -1.8 721,566 - -0.3 721,566 - -2.9 721,566 - +1.2 721,585 + -1.7 721,585 + +0.6 721,585 + -1.1 721,585 + -1.7 721,585 + +1.4 721,588 + +1.3 721,588 + -1.1 721,588 + -0.9 721,588 + +1.8 721,589 - -3.0 721,589 - -1.9 721,589 - +1.3 721,589 - +2.1 721,589 - -0.3 721,589 - +0.8 721,589 - -0.7 721,661 - DDA3937_RS03305 0.12 -0.7 721,661 - DDA3937_RS03305 0.12 +0.1 721,661 - DDA3937_RS03305 0.12 +1.7 721,661 - DDA3937_RS03305 0.12 +0.1 721,746 + DDA3937_RS03305 0.24 -1.4 721,746 + DDA3937_RS03305 0.24 +0.8 721,746 + DDA3937_RS03305 0.24 -0.1 721,746 + DDA3937_RS03305 0.24 +1.1 721,746 + DDA3937_RS03305 0.24 +0.5 721,746 + DDA3937_RS03305 0.24 +0.6 721,746 + DDA3937_RS03305 0.24 +1.1 721,746 + DDA3937_RS03305 0.24 -0.0 721,746 + DDA3937_RS03305 0.24 -0.3 721,746 + DDA3937_RS03305 0.24 +1.2 721,746 + DDA3937_RS03305 0.24 -1.7 721,746 + DDA3937_RS03305 0.24 -0.7 721,746 + DDA3937_RS03305 0.24 +0.8 721,746 + +1.5 721,747 - DDA3937_RS03305 0.24 -0.9 721,747 - DDA3937_RS03305 0.24 -1.1 721,747 - DDA3937_RS03305 0.24 -0.9 721,747 - DDA3937_RS03305 0.24 +1.6 721,747 - DDA3937_RS03305 0.24 +2.9 721,747 - DDA3937_RS03305 0.24 -0.7 721,747 - DDA3937_RS03305 0.24 +0.6 721,748 + DDA3937_RS03305 0.25 +1.3 721,748 + DDA3937_RS03305 0.25 -2.2 721,749 - -0.5 721,788 + DDA3937_RS03305 0.30 +0.1 721,788 + DDA3937_RS03305 0.30 -0.1 721,788 + DDA3937_RS03305 0.30 +2.1 721,788 + DDA3937_RS03305 0.30 +0.6 721,788 + DDA3937_RS03305 0.30 +2.4 721,789 - DDA3937_RS03305 0.30 -1.9 721,789 - DDA3937_RS03305 0.30 +1.0 721,789 - -0.3 721,789 - DDA3937_RS03305 0.30 -0.6 721,789 - DDA3937_RS03305 0.30 +0.1 721,875 + DDA3937_RS03305 0.42 +0.9 721,875 + DDA3937_RS03305 0.42 -2.8 721,876 - DDA3937_RS03305 0.42 -2.0 721,877 + DDA3937_RS03305 0.43 -1.4 721,877 + DDA3937_RS03305 0.43 +0.7 721,922 + +0.1 721,922 + DDA3937_RS03305 0.49 -1.3 721,922 + DDA3937_RS03305 0.49 -0.5 721,922 + DDA3937_RS03305 0.49 +1.1 721,922 + -0.3 721,923 - DDA3937_RS03305 0.49 +0.1 721,923 - DDA3937_RS03305 0.49 -1.5 721,923 - DDA3937_RS03305 0.49 -0.3 721,965 + DDA3937_RS03305 0.55 -1.2 721,966 - DDA3937_RS03305 0.55 +0.9 721,966 - DDA3937_RS03305 0.55 -1.1 721,966 - DDA3937_RS03305 0.55 +0.4 721,992 + DDA3937_RS03305 0.59 -0.5 722,091 - DDA3937_RS03305 0.72 -2.5 722,123 + DDA3937_RS03305 0.77 -0.9 722,123 + DDA3937_RS03305 0.77 -1.1 722,124 - DDA3937_RS03305 0.77 -0.5 722,124 - DDA3937_RS03305 0.77 -1.8 722,124 - DDA3937_RS03305 0.77 -0.3 722,303 + -2.3 722,412 - +0.5 722,412 - -1.3 722,413 + -1.9 722,414 - -1.1
Or see this region's nucleotide sequence