Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03255 and DDA3937_RS03260 are separated by 188 nucleotides DDA3937_RS03260 and DDA3937_RS03265 are separated by 69 nucleotides DDA3937_RS03265 and DDA3937_RS03270 are separated by 208 nucleotides DDA3937_RS03270 and DDA3937_RS03275 are separated by 72 nucleotides
DDA3937_RS03255: DDA3937_RS03255 - aminomethyl-transferring glycine dehydrogenase, at 710,961 to 713,834
_RS03255
DDA3937_RS03260: DDA3937_RS03260 - LysE family translocator, at 714,023 to 714,673
_RS03260
DDA3937_RS03265: DDA3937_RS03265 - HD domain-containing protein, at 714,743 to 715,351
_RS03265
DDA3937_RS03270: DDA3937_RS03270 - hemolysin III family protein, at 715,560 to 716,210
_RS03270
DDA3937_RS03275: DDA3937_RS03275 - tRNA-modifying protein YgfZ, at 716,283 to 717,263
_RS03275
Position (kb) 714
715
716 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 713.749 kb on - strand at 713.792 kb on + strand at 713.793 kb on - strand at 713.793 kb on - strand at 713.793 kb on - strand at 713.827 kb on - strand at 713.827 kb on - strand at 713.832 kb on + strand at 713.832 kb on + strand at 713.833 kb on - strand at 713.833 kb on - strand at 713.845 kb on + strand at 713.846 kb on - strand at 713.846 kb on - strand at 713.857 kb on - strand at 713.857 kb on - strand at 713.951 kb on + strand at 713.951 kb on + strand at 713.951 kb on + strand at 713.951 kb on + strand at 713.951 kb on + strand at 713.951 kb on + strand at 713.952 kb on - strand at 713.952 kb on - strand at 714.027 kb on + strand at 714.040 kb on + strand at 714.041 kb on - strand at 714.041 kb on - strand at 714.053 kb on - strand at 714.106 kb on + strand, within DDA3937_RS03260 at 714.107 kb on - strand, within DDA3937_RS03260 at 714.242 kb on - strand, within DDA3937_RS03260 at 714.270 kb on - strand, within DDA3937_RS03260 at 714.270 kb on - strand, within DDA3937_RS03260 at 714.278 kb on + strand, within DDA3937_RS03260 at 714.279 kb on - strand, within DDA3937_RS03260 at 714.279 kb on - strand, within DDA3937_RS03260 at 714.279 kb on - strand, within DDA3937_RS03260 at 714.279 kb on - strand, within DDA3937_RS03260 at 714.280 kb on + strand, within DDA3937_RS03260 at 714.408 kb on + strand, within DDA3937_RS03260 at 714.408 kb on + strand, within DDA3937_RS03260 at 714.409 kb on - strand at 714.409 kb on - strand, within DDA3937_RS03260 at 714.409 kb on - strand, within DDA3937_RS03260 at 714.610 kb on + strand at 714.610 kb on + strand at 714.610 kb on + strand at 714.611 kb on - strand at 714.631 kb on + strand at 714.631 kb on + strand at 714.632 kb on - strand at 714.745 kb on - strand at 714.792 kb on + strand at 714.793 kb on - strand at 714.814 kb on + strand, within DDA3937_RS03265 at 714.814 kb on + strand, within DDA3937_RS03265 at 714.824 kb on - strand, within DDA3937_RS03265 at 714.859 kb on + strand, within DDA3937_RS03265 at 714.869 kb on + strand, within DDA3937_RS03265 at 714.966 kb on + strand, within DDA3937_RS03265 at 714.967 kb on - strand, within DDA3937_RS03265 at 715.080 kb on + strand, within DDA3937_RS03265 at 715.080 kb on + strand, within DDA3937_RS03265 at 715.081 kb on - strand, within DDA3937_RS03265 at 715.081 kb on - strand, within DDA3937_RS03265 at 715.081 kb on - strand, within DDA3937_RS03265 at 715.338 kb on - strand at 715.369 kb on + strand at 715.369 kb on + strand at 715.370 kb on - strand at 715.370 kb on - strand at 715.370 kb on - strand at 715.370 kb on - strand at 715.385 kb on + strand at 715.386 kb on - strand at 715.399 kb on + strand at 715.399 kb on + strand at 715.399 kb on + strand at 715.399 kb on + strand at 715.447 kb on + strand at 715.447 kb on + strand at 715.460 kb on + strand at 715.460 kb on + strand at 715.461 kb on - strand at 715.461 kb on - strand at 715.481 kb on + strand at 715.534 kb on - strand at 715.539 kb on + strand at 715.539 kb on + strand at 715.540 kb on - strand at 715.540 kb on - strand at 715.540 kb on - strand at 715.540 kb on - strand at 715.588 kb on - strand at 715.589 kb on + strand at 715.589 kb on + strand at 715.590 kb on - strand at 715.590 kb on - strand at 715.616 kb on + strand at 715.663 kb on + strand, within DDA3937_RS03270 at 715.663 kb on + strand, within DDA3937_RS03270 at 715.664 kb on - strand, within DDA3937_RS03270 at 715.664 kb on - strand, within DDA3937_RS03270 at 715.664 kb on - strand, within DDA3937_RS03270 at 715.664 kb on - strand, within DDA3937_RS03270 at 715.664 kb on - strand, within DDA3937_RS03270 at 715.666 kb on + strand, within DDA3937_RS03270 at 715.666 kb on + strand, within DDA3937_RS03270 at 715.716 kb on + strand, within DDA3937_RS03270 at 715.718 kb on + strand at 715.718 kb on + strand, within DDA3937_RS03270 at 715.718 kb on + strand, within DDA3937_RS03270 at 715.718 kb on + strand, within DDA3937_RS03270 at 715.718 kb on + strand, within DDA3937_RS03270 at 715.719 kb on - strand, within DDA3937_RS03270 at 715.719 kb on - strand, within DDA3937_RS03270 at 715.723 kb on + strand, within DDA3937_RS03270 at 715.723 kb on + strand, within DDA3937_RS03270 at 715.723 kb on + strand, within DDA3937_RS03270 at 715.723 kb on + strand, within DDA3937_RS03270 at 715.723 kb on + strand, within DDA3937_RS03270 at 715.723 kb on + strand, within DDA3937_RS03270 at 715.723 kb on + strand, within DDA3937_RS03270 at 715.723 kb on + strand, within DDA3937_RS03270 at 715.723 kb on + strand, within DDA3937_RS03270 at 715.723 kb on + strand, within DDA3937_RS03270 at 715.723 kb on + strand, within DDA3937_RS03270 at 715.724 kb on - strand, within DDA3937_RS03270 at 715.724 kb on - strand, within DDA3937_RS03270 at 715.724 kb on - strand, within DDA3937_RS03270 at 715.724 kb on - strand, within DDA3937_RS03270 at 715.726 kb on - strand, within DDA3937_RS03270 at 715.726 kb on - strand, within DDA3937_RS03270 at 715.726 kb on - strand, within DDA3937_RS03270 at 715.726 kb on - strand, within DDA3937_RS03270 at 715.744 kb on + strand, within DDA3937_RS03270 at 715.745 kb on - strand, within DDA3937_RS03270 at 715.768 kb on - strand, within DDA3937_RS03270 at 715.768 kb on - strand, within DDA3937_RS03270 at 715.768 kb on - strand, within DDA3937_RS03270 at 715.830 kb on + strand, within DDA3937_RS03270 at 715.831 kb on - strand, within DDA3937_RS03270 at 715.831 kb on - strand, within DDA3937_RS03270 at 715.831 kb on - strand, within DDA3937_RS03270 at 715.831 kb on - strand, within DDA3937_RS03270 at 715.851 kb on + strand, within DDA3937_RS03270 at 715.851 kb on + strand, within DDA3937_RS03270 at 715.851 kb on + strand, within DDA3937_RS03270 at 715.851 kb on + strand, within DDA3937_RS03270 at 715.851 kb on + strand, within DDA3937_RS03270 at 715.851 kb on + strand, within DDA3937_RS03270 at 715.851 kb on + strand, within DDA3937_RS03270 at 715.852 kb on - strand, within DDA3937_RS03270 at 715.852 kb on - strand, within DDA3937_RS03270 at 715.852 kb on - strand, within DDA3937_RS03270 at 715.852 kb on - strand, within DDA3937_RS03270 at 715.852 kb on - strand, within DDA3937_RS03270 at 715.852 kb on - strand, within DDA3937_RS03270 at 715.853 kb on + strand, within DDA3937_RS03270 at 715.854 kb on - strand, within DDA3937_RS03270 at 715.854 kb on - strand, within DDA3937_RS03270 at 715.877 kb on + strand, within DDA3937_RS03270 at 715.910 kb on + strand, within DDA3937_RS03270 at 715.910 kb on + strand, within DDA3937_RS03270 at 715.911 kb on - strand, within DDA3937_RS03270 at 715.939 kb on + strand, within DDA3937_RS03270 at 715.939 kb on + strand, within DDA3937_RS03270 at 715.939 kb on + strand, within DDA3937_RS03270 at 715.968 kb on - strand, within DDA3937_RS03270 at 715.968 kb on - strand, within DDA3937_RS03270 at 715.968 kb on - strand, within DDA3937_RS03270 at 715.985 kb on + strand, within DDA3937_RS03270 at 715.985 kb on + strand, within DDA3937_RS03270 at 715.986 kb on - strand, within DDA3937_RS03270 at 715.986 kb on - strand, within DDA3937_RS03270 at 715.986 kb on - strand, within DDA3937_RS03270 at 715.986 kb on - strand, within DDA3937_RS03270 at 715.989 kb on + strand, within DDA3937_RS03270 at 715.989 kb on + strand, within DDA3937_RS03270 at 715.990 kb on - strand, within DDA3937_RS03270 at 715.990 kb on - strand, within DDA3937_RS03270 at 715.990 kb on - strand, within DDA3937_RS03270 at 716.025 kb on + strand, within DDA3937_RS03270 at 716.025 kb on + strand, within DDA3937_RS03270 at 716.025 kb on + strand, within DDA3937_RS03270 at 716.026 kb on - strand, within DDA3937_RS03270 at 716.074 kb on + strand, within DDA3937_RS03270 at 716.088 kb on + strand, within DDA3937_RS03270 at 716.088 kb on + strand, within DDA3937_RS03270 at 716.089 kb on - strand, within DDA3937_RS03270 at 716.090 kb on + strand, within DDA3937_RS03270 at 716.090 kb on + strand, within DDA3937_RS03270 at 716.091 kb on - strand, within DDA3937_RS03270 at 716.091 kb on - strand, within DDA3937_RS03270 at 716.109 kb on + strand, within DDA3937_RS03270 at 716.109 kb on + strand, within DDA3937_RS03270 at 716.109 kb on + strand, within DDA3937_RS03270 at 716.110 kb on - strand, within DDA3937_RS03270 at 716.110 kb on - strand at 716.123 kb on + strand, within DDA3937_RS03270 at 716.124 kb on - strand, within DDA3937_RS03270 at 716.193 kb on + strand at 716.193 kb on + strand at 716.194 kb on - strand at 716.199 kb on + strand at 716.199 kb on + strand at 716.199 kb on + strand at 716.199 kb on + strand at 716.199 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 713,749 - -0.8 713,792 + -1.2 713,793 - +0.6 713,793 - +0.1 713,793 - -0.2 713,827 - +2.1 713,827 - -0.8 713,832 + -2.3 713,832 + -0.9 713,833 - -0.6 713,833 - +0.9 713,845 + +0.1 713,846 - +0.1 713,846 - +0.1 713,857 - +0.4 713,857 - -3.0 713,951 + +0.5 713,951 + -0.7 713,951 + -1.3 713,951 + -0.3 713,951 + -0.4 713,951 + +0.1 713,952 - -0.8 713,952 - +0.3 714,027 + +1.1 714,040 + +1.1 714,041 - -0.3 714,041 - -0.5 714,053 - -2.3 714,106 + DDA3937_RS03260 0.13 +0.5 714,107 - DDA3937_RS03260 0.13 -0.9 714,242 - DDA3937_RS03260 0.34 -2.1 714,270 - DDA3937_RS03260 0.38 +1.5 714,270 - DDA3937_RS03260 0.38 +1.1 714,278 + DDA3937_RS03260 0.39 +0.4 714,279 - DDA3937_RS03260 0.39 +0.4 714,279 - DDA3937_RS03260 0.39 -0.4 714,279 - DDA3937_RS03260 0.39 -1.9 714,279 - DDA3937_RS03260 0.39 +1.3 714,280 + DDA3937_RS03260 0.39 -1.9 714,408 + DDA3937_RS03260 0.59 -0.9 714,408 + DDA3937_RS03260 0.59 +0.6 714,409 - +0.1 714,409 - DDA3937_RS03260 0.59 -1.6 714,409 - DDA3937_RS03260 0.59 +1.6 714,610 + +1.7 714,610 + -0.3 714,610 + -1.2 714,611 - -0.4 714,631 + -1.6 714,631 + -0.3 714,632 - +1.4 714,745 - -0.4 714,792 + -3.1 714,793 - +0.6 714,814 + DDA3937_RS03265 0.12 -0.1 714,814 + DDA3937_RS03265 0.12 -0.9 714,824 - DDA3937_RS03265 0.13 -1.3 714,859 + DDA3937_RS03265 0.19 -2.2 714,869 + DDA3937_RS03265 0.21 -1.4 714,966 + DDA3937_RS03265 0.37 -1.6 714,967 - DDA3937_RS03265 0.37 -1.1 715,080 + DDA3937_RS03265 0.55 -2.0 715,080 + DDA3937_RS03265 0.55 +2.3 715,081 - DDA3937_RS03265 0.56 -2.1 715,081 - DDA3937_RS03265 0.56 -2.5 715,081 - DDA3937_RS03265 0.56 -1.9 715,338 - -1.0 715,369 + -0.3 715,369 + -1.4 715,370 - +0.5 715,370 - -0.5 715,370 - -0.4 715,370 - -1.9 715,385 + +3.5 715,386 - +0.5 715,399 + +2.1 715,399 + -0.6 715,399 + +0.1 715,399 + -1.9 715,447 + -0.6 715,447 + -0.3 715,460 + -0.8 715,460 + +2.1 715,461 - -0.9 715,461 - -1.3 715,481 + -0.1 715,534 - -1.4 715,539 + -1.8 715,539 + -0.5 715,540 - +1.4 715,540 - -2.0 715,540 - -1.5 715,540 - +0.6 715,588 - -0.3 715,589 + +0.1 715,589 + -0.8 715,590 - -0.9 715,590 - +0.1 715,616 + -2.2 715,663 + DDA3937_RS03270 0.16 -1.5 715,663 + DDA3937_RS03270 0.16 +1.6 715,664 - DDA3937_RS03270 0.16 -0.6 715,664 - DDA3937_RS03270 0.16 -0.5 715,664 - DDA3937_RS03270 0.16 -0.4 715,664 - DDA3937_RS03270 0.16 +0.2 715,664 - DDA3937_RS03270 0.16 -2.3 715,666 + DDA3937_RS03270 0.16 -0.8 715,666 + DDA3937_RS03270 0.16 -1.3 715,716 + DDA3937_RS03270 0.24 -1.6 715,718 + +1.1 715,718 + DDA3937_RS03270 0.24 -2.3 715,718 + DDA3937_RS03270 0.24 +0.4 715,718 + DDA3937_RS03270 0.24 -2.4 715,718 + DDA3937_RS03270 0.24 -1.4 715,719 - DDA3937_RS03270 0.24 -1.6 715,719 - DDA3937_RS03270 0.24 -1.1 715,723 + DDA3937_RS03270 0.25 -1.9 715,723 + DDA3937_RS03270 0.25 -0.5 715,723 + DDA3937_RS03270 0.25 +0.4 715,723 + DDA3937_RS03270 0.25 -0.3 715,723 + DDA3937_RS03270 0.25 -1.4 715,723 + DDA3937_RS03270 0.25 +0.1 715,723 + DDA3937_RS03270 0.25 -2.2 715,723 + DDA3937_RS03270 0.25 -0.9 715,723 + DDA3937_RS03270 0.25 -2.3 715,723 + DDA3937_RS03270 0.25 +0.1 715,723 + DDA3937_RS03270 0.25 -0.3 715,724 - DDA3937_RS03270 0.25 -1.0 715,724 - DDA3937_RS03270 0.25 -2.1 715,724 - DDA3937_RS03270 0.25 +0.5 715,724 - DDA3937_RS03270 0.25 -2.6 715,726 - DDA3937_RS03270 0.25 -1.4 715,726 - DDA3937_RS03270 0.25 +1.5 715,726 - DDA3937_RS03270 0.25 -1.4 715,726 - DDA3937_RS03270 0.25 +0.1 715,744 + DDA3937_RS03270 0.28 +0.7 715,745 - DDA3937_RS03270 0.28 +1.0 715,768 - DDA3937_RS03270 0.32 -0.3 715,768 - DDA3937_RS03270 0.32 +0.7 715,768 - DDA3937_RS03270 0.32 -1.3 715,830 + DDA3937_RS03270 0.41 +0.5 715,831 - DDA3937_RS03270 0.42 -0.5 715,831 - DDA3937_RS03270 0.42 -1.5 715,831 - DDA3937_RS03270 0.42 -2.1 715,831 - DDA3937_RS03270 0.42 -0.4 715,851 + DDA3937_RS03270 0.45 +0.6 715,851 + DDA3937_RS03270 0.45 +0.5 715,851 + DDA3937_RS03270 0.45 -0.4 715,851 + DDA3937_RS03270 0.45 +1.4 715,851 + DDA3937_RS03270 0.45 +0.1 715,851 + DDA3937_RS03270 0.45 +2.1 715,851 + DDA3937_RS03270 0.45 +1.8 715,852 - DDA3937_RS03270 0.45 -1.9 715,852 - DDA3937_RS03270 0.45 -1.4 715,852 - DDA3937_RS03270 0.45 +0.1 715,852 - DDA3937_RS03270 0.45 +0.6 715,852 - DDA3937_RS03270 0.45 -1.4 715,852 - DDA3937_RS03270 0.45 +1.1 715,853 + DDA3937_RS03270 0.45 -1.2 715,854 - DDA3937_RS03270 0.45 -1.5 715,854 - DDA3937_RS03270 0.45 -1.1 715,877 + DDA3937_RS03270 0.49 -0.3 715,910 + DDA3937_RS03270 0.54 -1.4 715,910 + DDA3937_RS03270 0.54 -2.2 715,911 - DDA3937_RS03270 0.54 -0.1 715,939 + DDA3937_RS03270 0.58 -0.0 715,939 + DDA3937_RS03270 0.58 +2.1 715,939 + DDA3937_RS03270 0.58 +1.5 715,968 - DDA3937_RS03270 0.63 -0.4 715,968 - DDA3937_RS03270 0.63 -1.0 715,968 - DDA3937_RS03270 0.63 -1.9 715,985 + DDA3937_RS03270 0.65 +0.7 715,985 + DDA3937_RS03270 0.65 +1.8 715,986 - DDA3937_RS03270 0.65 -1.3 715,986 - DDA3937_RS03270 0.65 -0.9 715,986 - DDA3937_RS03270 0.65 -0.8 715,986 - DDA3937_RS03270 0.65 +0.5 715,989 + DDA3937_RS03270 0.66 +0.6 715,989 + DDA3937_RS03270 0.66 -1.1 715,990 - DDA3937_RS03270 0.66 -1.6 715,990 - DDA3937_RS03270 0.66 -2.2 715,990 - DDA3937_RS03270 0.66 -2.3 716,025 + DDA3937_RS03270 0.71 +1.7 716,025 + DDA3937_RS03270 0.71 -0.4 716,025 + DDA3937_RS03270 0.71 +0.1 716,026 - DDA3937_RS03270 0.72 +0.4 716,074 + DDA3937_RS03270 0.79 -0.4 716,088 + DDA3937_RS03270 0.81 +0.5 716,088 + DDA3937_RS03270 0.81 +0.8 716,089 - DDA3937_RS03270 0.81 +1.3 716,090 + DDA3937_RS03270 0.81 +1.6 716,090 + DDA3937_RS03270 0.81 -0.4 716,091 - DDA3937_RS03270 0.82 -1.5 716,091 - DDA3937_RS03270 0.82 -1.5 716,109 + DDA3937_RS03270 0.84 -1.6 716,109 + DDA3937_RS03270 0.84 -0.3 716,109 + DDA3937_RS03270 0.84 -1.3 716,110 - DDA3937_RS03270 0.84 -1.2 716,110 - +2.1 716,123 + DDA3937_RS03270 0.86 +2.4 716,124 - DDA3937_RS03270 0.87 -0.8 716,193 + +0.1 716,193 + -2.0 716,194 - +0.6 716,199 + +1.9 716,199 + +0.1 716,199 + +1.8 716,199 + -1.8 716,199 + -0.3
Or see this region's nucleotide sequence