Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03245 and DDA3937_RS03250 are separated by 31 nucleotides DDA3937_RS03250 and DDA3937_RS03255 are separated by 112 nucleotides
DDA3937_RS03245: DDA3937_RS03245 - glycine cleavage system aminomethyltransferase GcvT, at 709,309 to 710,409
_RS03245
DDA3937_RS03250: DDA3937_RS03250 - glycine cleavage system protein GcvH, at 710,441 to 710,848
_RS03250
DDA3937_RS03255: DDA3937_RS03255 - aminomethyl-transferring glycine dehydrogenase, at 710,961 to 713,834
_RS03255
Position (kb) 710
711 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 709.561 kb on + strand, within DDA3937_RS03245 at 709.561 kb on + strand at 709.561 kb on + strand, within DDA3937_RS03245 at 709.561 kb on + strand, within DDA3937_RS03245 at 709.561 kb on + strand at 709.561 kb on + strand, within DDA3937_RS03245 at 709.562 kb on - strand, within DDA3937_RS03245 at 709.562 kb on - strand, within DDA3937_RS03245 at 709.562 kb on - strand, within DDA3937_RS03245 at 709.562 kb on - strand, within DDA3937_RS03245 at 709.562 kb on - strand, within DDA3937_RS03245 at 709.562 kb on - strand, within DDA3937_RS03245 at 709.562 kb on - strand, within DDA3937_RS03245 at 709.562 kb on - strand, within DDA3937_RS03245 at 709.564 kb on - strand, within DDA3937_RS03245 at 709.630 kb on + strand, within DDA3937_RS03245 at 709.631 kb on - strand, within DDA3937_RS03245 at 709.631 kb on - strand, within DDA3937_RS03245 at 709.631 kb on - strand, within DDA3937_RS03245 at 709.704 kb on + strand, within DDA3937_RS03245 at 709.704 kb on + strand, within DDA3937_RS03245 at 709.705 kb on - strand, within DDA3937_RS03245 at 709.705 kb on - strand, within DDA3937_RS03245 at 709.705 kb on - strand, within DDA3937_RS03245 at 709.775 kb on + strand, within DDA3937_RS03245 at 709.775 kb on + strand, within DDA3937_RS03245 at 709.873 kb on + strand, within DDA3937_RS03245 at 709.874 kb on - strand, within DDA3937_RS03245 at 709.875 kb on + strand, within DDA3937_RS03245 at 709.875 kb on + strand, within DDA3937_RS03245 at 709.875 kb on + strand, within DDA3937_RS03245 at 709.875 kb on + strand, within DDA3937_RS03245 at 709.876 kb on - strand at 709.891 kb on + strand, within DDA3937_RS03245 at 710.139 kb on + strand, within DDA3937_RS03245 at 710.139 kb on + strand, within DDA3937_RS03245 at 710.140 kb on - strand, within DDA3937_RS03245 at 710.140 kb on - strand, within DDA3937_RS03245 at 710.215 kb on - strand, within DDA3937_RS03245 at 710.281 kb on - strand, within DDA3937_RS03245 at 710.323 kb on - strand at 710.468 kb on + strand at 710.468 kb on + strand at 710.468 kb on + strand at 710.469 kb on - strand at 710.469 kb on - strand at 710.469 kb on - strand at 710.469 kb on - strand at 710.469 kb on - strand at 710.469 kb on - strand at 710.469 kb on - strand at 710.469 kb on - strand at 710.469 kb on - strand at 710.470 kb on + strand at 710.470 kb on + strand at 710.470 kb on + strand at 710.470 kb on + strand at 710.470 kb on + strand at 710.471 kb on - strand at 710.652 kb on - strand, within DDA3937_RS03250 at 710.652 kb on - strand, within DDA3937_RS03250 at 710.652 kb on - strand, within DDA3937_RS03250 at 710.673 kb on + strand, within DDA3937_RS03250 at 710.674 kb on - strand at 710.847 kb on - strand at 710.847 kb on - strand at 710.904 kb on + strand at 710.905 kb on - strand at 710.905 kb on - strand at 710.905 kb on - strand at 710.905 kb on - strand at 710.905 kb on - strand at 711.014 kb on + strand at 711.014 kb on + strand at 711.083 kb on + strand at 711.083 kb on + strand at 711.084 kb on - strand at 711.084 kb on - strand at 711.153 kb on + strand at 711.153 kb on + strand at 711.211 kb on - strand at 711.225 kb on + strand at 711.226 kb on - strand at 711.285 kb on + strand, within DDA3937_RS03255 at 711.285 kb on + strand, within DDA3937_RS03255 at 711.285 kb on + strand, within DDA3937_RS03255 at 711.286 kb on - strand, within DDA3937_RS03255 at 711.286 kb on - strand, within DDA3937_RS03255 at 711.286 kb on - strand, within DDA3937_RS03255 at 711.296 kb on + strand, within DDA3937_RS03255 at 711.296 kb on + strand, within DDA3937_RS03255 at 711.297 kb on - strand, within DDA3937_RS03255 at 711.297 kb on - strand, within DDA3937_RS03255 at 711.585 kb on + strand, within DDA3937_RS03255 at 711.585 kb on + strand, within DDA3937_RS03255 at 711.585 kb on + strand, within DDA3937_RS03255 at 711.586 kb on - strand, within DDA3937_RS03255 at 711.586 kb on - strand, within DDA3937_RS03255 at 711.604 kb on + strand, within DDA3937_RS03255 at 711.752 kb on + strand, within DDA3937_RS03255 at 711.752 kb on + strand, within DDA3937_RS03255 at 711.757 kb on + strand, within DDA3937_RS03255 at 711.757 kb on + strand, within DDA3937_RS03255 at 711.757 kb on + strand, within DDA3937_RS03255 at 711.758 kb on - strand, within DDA3937_RS03255 at 711.758 kb on - strand, within DDA3937_RS03255 at 711.838 kb on - strand, within DDA3937_RS03255
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 709,561 + DDA3937_RS03245 0.23 +0.2 709,561 + +1.1 709,561 + DDA3937_RS03245 0.23 -1.4 709,561 + DDA3937_RS03245 0.23 -0.2 709,561 + +0.5 709,561 + DDA3937_RS03245 0.23 +0.8 709,562 - DDA3937_RS03245 0.23 -0.4 709,562 - DDA3937_RS03245 0.23 -1.8 709,562 - DDA3937_RS03245 0.23 -0.9 709,562 - DDA3937_RS03245 0.23 +0.5 709,562 - DDA3937_RS03245 0.23 -0.9 709,562 - DDA3937_RS03245 0.23 -0.9 709,562 - DDA3937_RS03245 0.23 +2.1 709,562 - DDA3937_RS03245 0.23 +2.1 709,564 - DDA3937_RS03245 0.23 -1.5 709,630 + DDA3937_RS03245 0.29 -1.4 709,631 - DDA3937_RS03245 0.29 +1.5 709,631 - DDA3937_RS03245 0.29 -0.5 709,631 - DDA3937_RS03245 0.29 -1.9 709,704 + DDA3937_RS03245 0.36 +0.4 709,704 + DDA3937_RS03245 0.36 +0.2 709,705 - DDA3937_RS03245 0.36 -0.5 709,705 - DDA3937_RS03245 0.36 -2.5 709,705 - DDA3937_RS03245 0.36 -0.8 709,775 + DDA3937_RS03245 0.42 -2.2 709,775 + DDA3937_RS03245 0.42 -0.8 709,873 + DDA3937_RS03245 0.51 -0.7 709,874 - DDA3937_RS03245 0.51 -0.5 709,875 + DDA3937_RS03245 0.51 -0.3 709,875 + DDA3937_RS03245 0.51 -1.4 709,875 + DDA3937_RS03245 0.51 -0.5 709,875 + DDA3937_RS03245 0.51 -2.3 709,876 - +0.1 709,891 + DDA3937_RS03245 0.53 +1.4 710,139 + DDA3937_RS03245 0.75 -0.5 710,139 + DDA3937_RS03245 0.75 -0.5 710,140 - DDA3937_RS03245 0.75 +1.2 710,140 - DDA3937_RS03245 0.75 -0.6 710,215 - DDA3937_RS03245 0.82 -0.3 710,281 - DDA3937_RS03245 0.88 -0.5 710,323 - +0.5 710,468 + -2.1 710,468 + -0.8 710,468 + -2.7 710,469 - +0.5 710,469 - -0.9 710,469 - -2.3 710,469 - -1.1 710,469 - -1.4 710,469 - +1.7 710,469 - -0.9 710,469 - -2.2 710,469 - -2.5 710,470 + -0.8 710,470 + -1.8 710,470 + -0.8 710,470 + +0.2 710,470 + +0.1 710,471 - -0.9 710,652 - DDA3937_RS03250 0.52 -1.6 710,652 - DDA3937_RS03250 0.52 +0.7 710,652 - DDA3937_RS03250 0.52 -0.5 710,673 + DDA3937_RS03250 0.57 -2.3 710,674 - +0.1 710,847 - -1.3 710,847 - +1.2 710,904 + -1.6 710,905 - +1.4 710,905 - -0.5 710,905 - +0.1 710,905 - +0.3 710,905 - -1.9 711,014 + +0.3 711,014 + -0.1 711,083 + -1.6 711,083 + -2.3 711,084 - +2.1 711,084 - -0.1 711,153 + -2.3 711,153 + -1.1 711,211 - +0.1 711,225 + -0.3 711,226 - +1.1 711,285 + DDA3937_RS03255 0.11 -3.5 711,285 + DDA3937_RS03255 0.11 +0.1 711,285 + DDA3937_RS03255 0.11 -0.5 711,286 - DDA3937_RS03255 0.11 +0.4 711,286 - DDA3937_RS03255 0.11 +0.2 711,286 - DDA3937_RS03255 0.11 -0.5 711,296 + DDA3937_RS03255 0.12 -0.1 711,296 + DDA3937_RS03255 0.12 -0.1 711,297 - DDA3937_RS03255 0.12 +0.4 711,297 - DDA3937_RS03255 0.12 -0.5 711,585 + DDA3937_RS03255 0.22 +0.7 711,585 + DDA3937_RS03255 0.22 -0.1 711,585 + DDA3937_RS03255 0.22 -0.9 711,586 - DDA3937_RS03255 0.22 -1.2 711,586 - DDA3937_RS03255 0.22 -1.4 711,604 + DDA3937_RS03255 0.22 +0.1 711,752 + DDA3937_RS03255 0.28 -1.2 711,752 + DDA3937_RS03255 0.28 -2.1 711,757 + DDA3937_RS03255 0.28 -0.4 711,757 + DDA3937_RS03255 0.28 -3.2 711,757 + DDA3937_RS03255 0.28 -0.8 711,758 - DDA3937_RS03255 0.28 -0.3 711,758 - DDA3937_RS03255 0.28 -0.5 711,838 - DDA3937_RS03255 0.31 -0.2
Or see this region's nucleotide sequence