Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03200 and DDA3937_RS03205 are separated by 116 nucleotides DDA3937_RS03205 and DDA3937_RS03210 are separated by 32 nucleotides DDA3937_RS03210 and DDA3937_RS03215 are separated by 55 nucleotides DDA3937_RS03215 and DDA3937_RS03220 are separated by 110 nucleotides DDA3937_RS03220 and DDA3937_RS03225 are separated by 128 nucleotides DDA3937_RS03225 and DDA3937_RS03230 are separated by 111 nucleotides DDA3937_RS03230 and DDA3937_RS03235 are separated by 55 nucleotides
DDA3937_RS03200: DDA3937_RS03200 - LysR family transcriptional regulator, at 701,744 to 702,646
_RS03200
DDA3937_RS03205: DDA3937_RS03205 - tRNA-Leu, at 702,763 to 702,848
_RS03205
DDA3937_RS03210: DDA3937_RS03210 - tRNA-Leu, at 702,881 to 702,966
_RS03210
DDA3937_RS03215: DDA3937_RS03215 - tRNA-Leu, at 703,022 to 703,107
_RS03215
DDA3937_RS03220: DDA3937_RS03220 - DUF1435 domain-containing protein, at 703,218 to 703,502
_RS03220
DDA3937_RS03225: DDA3937_RS03225 - LysR family transcriptional regulator, at 703,631 to 704,524
_RS03225
DDA3937_RS03230: DDA3937_RS03230 - acetolactate decarboxylase, at 704,636 to 705,424
_RS03230
DDA3937_RS03235: DDA3937_RS03235 - acetolactate synthase AlsS, at 705,480 to 707,159
_RS03235
Position (kb) 703
704
705 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 702.658 kb on + strand at 702.673 kb on + strand at 702.674 kb on - strand at 702.686 kb on + strand at 702.686 kb on + strand at 702.687 kb on - strand at 702.687 kb on - strand at 702.715 kb on - strand at 702.747 kb on + strand at 702.747 kb on + strand at 702.747 kb on + strand at 702.747 kb on + strand at 702.747 kb on + strand at 702.747 kb on + strand at 702.747 kb on + strand at 702.922 kb on + strand, within DDA3937_RS03210 at 702.973 kb on + strand at 702.973 kb on + strand at 702.990 kb on + strand at 702.991 kb on - strand at 703.011 kb on + strand at 703.011 kb on + strand at 703.015 kb on - strand at 703.063 kb on + strand, within DDA3937_RS03215 at 703.190 kb on - strand at 703.190 kb on - strand at 703.197 kb on + strand at 703.197 kb on + strand at 703.198 kb on - strand at 703.230 kb on + strand at 703.235 kb on + strand at 703.236 kb on - strand at 703.271 kb on + strand, within DDA3937_RS03220 at 703.272 kb on - strand, within DDA3937_RS03220 at 703.291 kb on + strand, within DDA3937_RS03220 at 703.301 kb on + strand, within DDA3937_RS03220 at 703.302 kb on - strand, within DDA3937_RS03220 at 703.302 kb on - strand, within DDA3937_RS03220 at 703.354 kb on + strand, within DDA3937_RS03220 at 703.354 kb on + strand, within DDA3937_RS03220 at 703.354 kb on + strand, within DDA3937_RS03220 at 703.355 kb on - strand, within DDA3937_RS03220 at 703.416 kb on + strand, within DDA3937_RS03220 at 703.417 kb on - strand, within DDA3937_RS03220 at 703.461 kb on + strand, within DDA3937_RS03220 at 703.461 kb on + strand, within DDA3937_RS03220 at 703.461 kb on + strand, within DDA3937_RS03220 at 703.462 kb on - strand, within DDA3937_RS03220 at 703.462 kb on - strand, within DDA3937_RS03220 at 703.470 kb on + strand, within DDA3937_RS03220 at 703.532 kb on - strand at 703.534 kb on + strand at 703.542 kb on - strand at 703.556 kb on + strand at 703.557 kb on - strand at 703.558 kb on + strand at 703.558 kb on + strand at 703.558 kb on + strand at 703.558 kb on + strand at 703.558 kb on + strand at 703.558 kb on + strand at 703.558 kb on + strand at 703.558 kb on + strand at 703.558 kb on + strand at 703.559 kb on - strand at 703.559 kb on - strand at 703.559 kb on - strand at 703.559 kb on - strand at 703.559 kb on - strand at 703.559 kb on - strand at 703.586 kb on + strand at 703.586 kb on + strand at 703.587 kb on - strand at 703.587 kb on - strand at 703.648 kb on - strand at 703.752 kb on + strand, within DDA3937_RS03225 at 703.752 kb on + strand, within DDA3937_RS03225 at 703.753 kb on - strand, within DDA3937_RS03225 at 703.753 kb on - strand, within DDA3937_RS03225 at 703.844 kb on - strand, within DDA3937_RS03225 at 703.844 kb on - strand, within DDA3937_RS03225 at 703.844 kb on - strand, within DDA3937_RS03225 at 703.887 kb on + strand, within DDA3937_RS03225 at 703.887 kb on + strand, within DDA3937_RS03225 at 703.887 kb on + strand, within DDA3937_RS03225 at 703.887 kb on + strand, within DDA3937_RS03225 at 703.887 kb on + strand, within DDA3937_RS03225 at 703.887 kb on + strand, within DDA3937_RS03225 at 703.887 kb on + strand, within DDA3937_RS03225 at 703.887 kb on + strand, within DDA3937_RS03225 at 703.888 kb on - strand, within DDA3937_RS03225 at 703.888 kb on - strand, within DDA3937_RS03225 at 703.888 kb on - strand, within DDA3937_RS03225 at 703.888 kb on - strand, within DDA3937_RS03225 at 703.888 kb on - strand, within DDA3937_RS03225 at 703.888 kb on - strand, within DDA3937_RS03225 at 704.043 kb on - strand, within DDA3937_RS03225 at 704.043 kb on - strand, within DDA3937_RS03225 at 704.084 kb on + strand, within DDA3937_RS03225 at 704.084 kb on + strand, within DDA3937_RS03225 at 704.101 kb on + strand, within DDA3937_RS03225 at 704.133 kb on + strand, within DDA3937_RS03225 at 704.133 kb on + strand, within DDA3937_RS03225 at 704.133 kb on + strand, within DDA3937_RS03225 at 704.134 kb on - strand, within DDA3937_RS03225 at 704.137 kb on + strand, within DDA3937_RS03225 at 704.137 kb on + strand, within DDA3937_RS03225 at 704.137 kb on + strand, within DDA3937_RS03225 at 704.137 kb on + strand, within DDA3937_RS03225 at 704.137 kb on + strand, within DDA3937_RS03225 at 704.137 kb on + strand, within DDA3937_RS03225 at 704.137 kb on + strand, within DDA3937_RS03225 at 704.137 kb on + strand, within DDA3937_RS03225 at 704.137 kb on + strand, within DDA3937_RS03225 at 704.138 kb on - strand, within DDA3937_RS03225 at 704.138 kb on - strand, within DDA3937_RS03225 at 704.138 kb on - strand, within DDA3937_RS03225 at 704.138 kb on - strand, within DDA3937_RS03225 at 704.138 kb on - strand, within DDA3937_RS03225 at 704.138 kb on - strand, within DDA3937_RS03225 at 704.173 kb on - strand, within DDA3937_RS03225 at 704.315 kb on - strand, within DDA3937_RS03225 at 704.331 kb on + strand, within DDA3937_RS03225 at 704.332 kb on - strand, within DDA3937_RS03225 at 704.516 kb on + strand at 704.516 kb on + strand at 704.516 kb on + strand at 704.516 kb on + strand at 704.516 kb on + strand at 704.517 kb on - strand at 704.517 kb on - strand at 704.524 kb on + strand at 704.525 kb on - strand at 704.527 kb on - strand at 704.557 kb on + strand at 704.653 kb on + strand at 704.653 kb on + strand at 704.654 kb on - strand at 704.728 kb on + strand, within DDA3937_RS03230 at 704.728 kb on + strand, within DDA3937_RS03230 at 704.728 kb on + strand at 704.729 kb on - strand, within DDA3937_RS03230 at 704.761 kb on + strand, within DDA3937_RS03230 at 704.779 kb on + strand, within DDA3937_RS03230 at 704.779 kb on + strand, within DDA3937_RS03230 at 704.779 kb on + strand, within DDA3937_RS03230 at 704.779 kb on + strand, within DDA3937_RS03230 at 705.037 kb on + strand, within DDA3937_RS03230 at 705.037 kb on + strand, within DDA3937_RS03230 at 705.037 kb on + strand, within DDA3937_RS03230 at 705.037 kb on + strand, within DDA3937_RS03230 at 705.038 kb on - strand, within DDA3937_RS03230 at 705.060 kb on + strand, within DDA3937_RS03230 at 705.061 kb on - strand, within DDA3937_RS03230 at 705.061 kb on - strand, within DDA3937_RS03230 at 705.061 kb on - strand, within DDA3937_RS03230 at 705.074 kb on - strand, within DDA3937_RS03230 at 705.097 kb on - strand, within DDA3937_RS03230 at 705.097 kb on - strand, within DDA3937_RS03230 at 705.116 kb on + strand, within DDA3937_RS03230 at 705.116 kb on + strand, within DDA3937_RS03230 at 705.117 kb on - strand, within DDA3937_RS03230 at 705.117 kb on - strand, within DDA3937_RS03230 at 705.118 kb on + strand, within DDA3937_RS03230 at 705.119 kb on - strand, within DDA3937_RS03230 at 705.119 kb on - strand, within DDA3937_RS03230 at 705.119 kb on - strand, within DDA3937_RS03230 at 705.197 kb on - strand, within DDA3937_RS03230 at 705.206 kb on + strand, within DDA3937_RS03230 at 705.206 kb on + strand, within DDA3937_RS03230 at 705.206 kb on + strand, within DDA3937_RS03230 at 705.206 kb on + strand, within DDA3937_RS03230 at 705.206 kb on + strand, within DDA3937_RS03230 at 705.206 kb on + strand, within DDA3937_RS03230 at 705.207 kb on - strand, within DDA3937_RS03230 at 705.207 kb on - strand, within DDA3937_RS03230 at 705.207 kb on - strand, within DDA3937_RS03230 at 705.207 kb on - strand at 705.207 kb on - strand, within DDA3937_RS03230 at 705.234 kb on - strand, within DDA3937_RS03230 at 705.277 kb on + strand, within DDA3937_RS03230 at 705.277 kb on + strand, within DDA3937_RS03230 at 705.277 kb on + strand, within DDA3937_RS03230 at 705.277 kb on + strand, within DDA3937_RS03230 at 705.277 kb on + strand, within DDA3937_RS03230 at 705.277 kb on + strand, within DDA3937_RS03230 at 705.277 kb on + strand, within DDA3937_RS03230 at 705.278 kb on - strand, within DDA3937_RS03230 at 705.278 kb on - strand, within DDA3937_RS03230 at 705.278 kb on - strand, within DDA3937_RS03230 at 705.278 kb on - strand, within DDA3937_RS03230 at 705.278 kb on - strand, within DDA3937_RS03230 at 705.278 kb on - strand, within DDA3937_RS03230 at 705.287 kb on + strand, within DDA3937_RS03230 at 705.306 kb on + strand, within DDA3937_RS03230 at 705.306 kb on + strand, within DDA3937_RS03230 at 705.306 kb on + strand, within DDA3937_RS03230 at 705.307 kb on - strand, within DDA3937_RS03230 at 705.307 kb on - strand, within DDA3937_RS03230 at 705.307 kb on - strand, within DDA3937_RS03230 at 705.307 kb on - strand, within DDA3937_RS03230 at 705.378 kb on + strand at 705.379 kb on - strand at 705.438 kb on + strand at 705.461 kb on + strand at 705.461 kb on + strand at 705.462 kb on - strand at 705.472 kb on + strand at 705.488 kb on + strand at 705.488 kb on + strand at 705.488 kb on + strand at 705.489 kb on - strand at 705.513 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 702,658 + -0.7 702,673 + -1.6 702,674 - +0.4 702,686 + -1.5 702,686 + +2.0 702,687 - +1.0 702,687 - +2.6 702,715 - -0.8 702,747 + -2.2 702,747 + +1.2 702,747 + +1.8 702,747 + -1.8 702,747 + +0.0 702,747 + +1.2 702,747 + +1.6 702,922 + DDA3937_RS03210 0.48 +1.0 702,973 + -2.7 702,973 + -0.1 702,990 + -1.8 702,991 - -0.5 703,011 + +0.4 703,011 + +1.5 703,015 - +0.5 703,063 + DDA3937_RS03215 0.48 -2.3 703,190 - -0.6 703,190 - -1.0 703,197 + -3.0 703,197 + -1.5 703,198 - -0.4 703,230 + +2.0 703,235 + -3.0 703,236 - -1.1 703,271 + DDA3937_RS03220 0.19 +0.3 703,272 - DDA3937_RS03220 0.19 +0.0 703,291 + DDA3937_RS03220 0.26 -2.1 703,301 + DDA3937_RS03220 0.29 -2.5 703,302 - DDA3937_RS03220 0.29 -1.0 703,302 - DDA3937_RS03220 0.29 +1.7 703,354 + DDA3937_RS03220 0.48 -0.7 703,354 + DDA3937_RS03220 0.48 -0.5 703,354 + DDA3937_RS03220 0.48 -2.3 703,355 - DDA3937_RS03220 0.48 +0.2 703,416 + DDA3937_RS03220 0.69 +2.0 703,417 - DDA3937_RS03220 0.70 -1.4 703,461 + DDA3937_RS03220 0.85 +1.2 703,461 + DDA3937_RS03220 0.85 +0.7 703,461 + DDA3937_RS03220 0.85 -2.1 703,462 - DDA3937_RS03220 0.86 -2.0 703,462 - DDA3937_RS03220 0.86 -2.1 703,470 + DDA3937_RS03220 0.88 +0.2 703,532 - -0.4 703,534 + -2.0 703,542 - -0.3 703,556 + -2.0 703,557 - +2.0 703,558 + +0.6 703,558 + -0.4 703,558 + +0.5 703,558 + -0.8 703,558 + +0.8 703,558 + +0.9 703,558 + -1.1 703,558 + +0.9 703,558 + +0.5 703,559 - +1.6 703,559 - +0.9 703,559 - -0.2 703,559 - +1.7 703,559 - +0.0 703,559 - +2.6 703,586 + -0.8 703,586 + +0.9 703,587 - +0.4 703,587 - -0.8 703,648 - -0.0 703,752 + DDA3937_RS03225 0.14 -0.3 703,752 + DDA3937_RS03225 0.14 -1.9 703,753 - DDA3937_RS03225 0.14 -1.4 703,753 - DDA3937_RS03225 0.14 +1.9 703,844 - DDA3937_RS03225 0.24 -1.4 703,844 - DDA3937_RS03225 0.24 +0.6 703,844 - DDA3937_RS03225 0.24 +0.5 703,887 + DDA3937_RS03225 0.29 -0.8 703,887 + DDA3937_RS03225 0.29 -1.0 703,887 + DDA3937_RS03225 0.29 -0.4 703,887 + DDA3937_RS03225 0.29 +0.8 703,887 + DDA3937_RS03225 0.29 -1.3 703,887 + DDA3937_RS03225 0.29 +1.3 703,887 + DDA3937_RS03225 0.29 +0.7 703,887 + DDA3937_RS03225 0.29 +1.5 703,888 - DDA3937_RS03225 0.29 -0.4 703,888 - DDA3937_RS03225 0.29 -1.7 703,888 - DDA3937_RS03225 0.29 +3.2 703,888 - DDA3937_RS03225 0.29 -1.5 703,888 - DDA3937_RS03225 0.29 -1.5 703,888 - DDA3937_RS03225 0.29 +0.9 704,043 - DDA3937_RS03225 0.46 +1.6 704,043 - DDA3937_RS03225 0.46 +0.0 704,084 + DDA3937_RS03225 0.51 -1.0 704,084 + DDA3937_RS03225 0.51 +0.4 704,101 + DDA3937_RS03225 0.53 -1.8 704,133 + DDA3937_RS03225 0.56 -2.1 704,133 + DDA3937_RS03225 0.56 +0.6 704,133 + DDA3937_RS03225 0.56 -1.2 704,134 - DDA3937_RS03225 0.56 -1.5 704,137 + DDA3937_RS03225 0.57 +0.8 704,137 + DDA3937_RS03225 0.57 -1.1 704,137 + DDA3937_RS03225 0.57 -0.6 704,137 + DDA3937_RS03225 0.57 +1.2 704,137 + DDA3937_RS03225 0.57 -0.8 704,137 + DDA3937_RS03225 0.57 +2.0 704,137 + DDA3937_RS03225 0.57 -0.2 704,137 + DDA3937_RS03225 0.57 +0.4 704,137 + DDA3937_RS03225 0.57 -1.3 704,138 - DDA3937_RS03225 0.57 -0.2 704,138 - DDA3937_RS03225 0.57 +0.0 704,138 - DDA3937_RS03225 0.57 -0.9 704,138 - DDA3937_RS03225 0.57 -0.5 704,138 - DDA3937_RS03225 0.57 -0.3 704,138 - DDA3937_RS03225 0.57 +0.2 704,173 - DDA3937_RS03225 0.61 +3.0 704,315 - DDA3937_RS03225 0.77 +1.9 704,331 + DDA3937_RS03225 0.78 -0.8 704,332 - DDA3937_RS03225 0.78 +1.3 704,516 + +1.8 704,516 + -1.5 704,516 + +0.0 704,516 + +1.9 704,516 + -0.0 704,517 - +0.7 704,517 - +0.5 704,524 + -1.0 704,525 - -1.1 704,527 - -1.8 704,557 + +1.1 704,653 + -2.9 704,653 + -0.7 704,654 - -0.8 704,728 + DDA3937_RS03230 0.12 -1.1 704,728 + DDA3937_RS03230 0.12 +1.9 704,728 + +1.1 704,729 - DDA3937_RS03230 0.12 -2.1 704,761 + DDA3937_RS03230 0.16 +1.6 704,779 + DDA3937_RS03230 0.18 -0.5 704,779 + DDA3937_RS03230 0.18 -0.5 704,779 + DDA3937_RS03230 0.18 -0.3 704,779 + DDA3937_RS03230 0.18 +0.8 705,037 + DDA3937_RS03230 0.51 -1.6 705,037 + DDA3937_RS03230 0.51 -3.0 705,037 + DDA3937_RS03230 0.51 -1.3 705,037 + DDA3937_RS03230 0.51 -0.4 705,038 - DDA3937_RS03230 0.51 -1.9 705,060 + DDA3937_RS03230 0.54 +1.1 705,061 - DDA3937_RS03230 0.54 -1.0 705,061 - DDA3937_RS03230 0.54 -1.7 705,061 - DDA3937_RS03230 0.54 -1.9 705,074 - DDA3937_RS03230 0.56 -0.5 705,097 - DDA3937_RS03230 0.58 +0.6 705,097 - DDA3937_RS03230 0.58 -2.7 705,116 + DDA3937_RS03230 0.61 +0.2 705,116 + DDA3937_RS03230 0.61 +0.4 705,117 - DDA3937_RS03230 0.61 -3.3 705,117 - DDA3937_RS03230 0.61 +0.1 705,118 + DDA3937_RS03230 0.61 -1.3 705,119 - DDA3937_RS03230 0.61 -0.4 705,119 - DDA3937_RS03230 0.61 +0.3 705,119 - DDA3937_RS03230 0.61 +0.1 705,197 - DDA3937_RS03230 0.71 -1.8 705,206 + DDA3937_RS03230 0.72 +1.5 705,206 + DDA3937_RS03230 0.72 -2.3 705,206 + DDA3937_RS03230 0.72 +2.1 705,206 + DDA3937_RS03230 0.72 +0.2 705,206 + DDA3937_RS03230 0.72 -1.9 705,206 + DDA3937_RS03230 0.72 -0.6 705,207 - DDA3937_RS03230 0.72 -0.3 705,207 - DDA3937_RS03230 0.72 -0.1 705,207 - DDA3937_RS03230 0.72 -0.8 705,207 - -0.8 705,207 - DDA3937_RS03230 0.72 -0.3 705,234 - DDA3937_RS03230 0.76 -0.5 705,277 + DDA3937_RS03230 0.81 +0.5 705,277 + DDA3937_RS03230 0.81 +0.1 705,277 + DDA3937_RS03230 0.81 -0.8 705,277 + DDA3937_RS03230 0.81 -1.8 705,277 + DDA3937_RS03230 0.81 -2.1 705,277 + DDA3937_RS03230 0.81 -1.5 705,277 + DDA3937_RS03230 0.81 +0.1 705,278 - DDA3937_RS03230 0.81 +1.4 705,278 - DDA3937_RS03230 0.81 -0.3 705,278 - DDA3937_RS03230 0.81 -0.9 705,278 - DDA3937_RS03230 0.81 -0.8 705,278 - DDA3937_RS03230 0.81 +1.3 705,278 - DDA3937_RS03230 0.81 -0.2 705,287 + DDA3937_RS03230 0.83 +0.1 705,306 + DDA3937_RS03230 0.85 -1.9 705,306 + DDA3937_RS03230 0.85 -0.9 705,306 + DDA3937_RS03230 0.85 +0.9 705,307 - DDA3937_RS03230 0.85 +1.3 705,307 - DDA3937_RS03230 0.85 -1.6 705,307 - DDA3937_RS03230 0.85 -1.3 705,307 - DDA3937_RS03230 0.85 +1.1 705,378 + -2.1 705,379 - -0.2 705,438 + +0.5 705,461 + +0.8 705,461 + -1.7 705,462 - -1.5 705,472 + -0.3 705,488 + -0.8 705,488 + +0.5 705,488 + -1.9 705,489 - -1.6 705,513 - +0.7
Or see this region's nucleotide sequence