Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS03080

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS03070 and DDA3937_RS03075 are separated by 74 nucleotidesDDA3937_RS03075 and DDA3937_RS03080 overlap by 1 nucleotidesDDA3937_RS03080 and DDA3937_RS03085 are separated by 107 nucleotidesDDA3937_RS03085 and DDA3937_RS03090 are separated by 251 nucleotides DDA3937_RS03070: DDA3937_RS03070 - translation initiation factor IF-2, at 675,726 to 678,443 _RS03070 DDA3937_RS03075: DDA3937_RS03075 - 30S ribosome-binding factor RbfA, at 678,518 to 678,919 _RS03075 DDA3937_RS03080: DDA3937_RS03080 - tRNA pseudouridine(55) synthase TruB, at 678,919 to 679,875 _RS03080 DDA3937_RS03085: DDA3937_RS03085 - 30S ribosomal protein S15, at 679,983 to 680,252 _RS03085 DDA3937_RS03090: DDA3937_RS03090 - polyribonucleotide nucleotidyltransferase, at 680,504 to 682,624 _RS03090 Position (kb) 678 679 680Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 678.458 kb on + strandat 678.459 kb on - strandat 678.886 kb on + strandat 678.887 kb on - strandat 678.887 kb on - strandat 678.972 kb on + strandat 679.013 kb on + strandat 679.026 kb on + strand, within DDA3937_RS03080at 679.026 kb on + strand, within DDA3937_RS03080at 679.026 kb on + strand, within DDA3937_RS03080at 679.027 kb on - strand, within DDA3937_RS03080at 679.120 kb on + strand, within DDA3937_RS03080at 679.120 kb on + strand, within DDA3937_RS03080at 679.120 kb on + strand, within DDA3937_RS03080at 679.137 kb on + strand, within DDA3937_RS03080at 679.179 kb on + strand, within DDA3937_RS03080at 679.179 kb on + strand, within DDA3937_RS03080at 679.180 kb on - strand, within DDA3937_RS03080at 679.294 kb on + strand, within DDA3937_RS03080at 679.294 kb on + strand, within DDA3937_RS03080at 679.294 kb on + strand, within DDA3937_RS03080at 679.295 kb on - strand, within DDA3937_RS03080at 679.295 kb on - strand, within DDA3937_RS03080at 679.309 kb on + strand, within DDA3937_RS03080at 679.310 kb on - strand, within DDA3937_RS03080at 679.310 kb on - strand, within DDA3937_RS03080at 679.310 kb on - strand, within DDA3937_RS03080at 679.327 kb on + strand, within DDA3937_RS03080at 679.328 kb on - strand, within DDA3937_RS03080at 679.333 kb on + strand, within DDA3937_RS03080at 679.333 kb on + strand, within DDA3937_RS03080at 679.334 kb on - strand, within DDA3937_RS03080at 679.334 kb on - strand, within DDA3937_RS03080at 679.374 kb on + strand, within DDA3937_RS03080at 679.384 kb on + strand, within DDA3937_RS03080at 679.384 kb on + strand, within DDA3937_RS03080at 679.384 kb on + strand, within DDA3937_RS03080at 679.384 kb on + strand, within DDA3937_RS03080at 679.385 kb on - strand, within DDA3937_RS03080at 679.385 kb on - strand, within DDA3937_RS03080at 679.385 kb on - strand, within DDA3937_RS03080at 679.385 kb on - strand, within DDA3937_RS03080at 679.453 kb on + strand, within DDA3937_RS03080at 679.453 kb on + strand, within DDA3937_RS03080at 679.453 kb on + strand, within DDA3937_RS03080at 679.453 kb on + strand, within DDA3937_RS03080at 679.453 kb on + strand, within DDA3937_RS03080at 679.453 kb on + strand, within DDA3937_RS03080at 679.453 kb on + strand, within DDA3937_RS03080at 679.453 kb on + strand, within DDA3937_RS03080at 679.453 kb on + strand, within DDA3937_RS03080at 679.453 kb on + strand, within DDA3937_RS03080at 679.454 kb on - strand, within DDA3937_RS03080at 679.454 kb on - strand, within DDA3937_RS03080at 679.454 kb on - strand, within DDA3937_RS03080at 679.454 kb on - strand, within DDA3937_RS03080at 679.454 kb on - strand, within DDA3937_RS03080at 679.467 kb on + strand, within DDA3937_RS03080at 679.467 kb on + strand, within DDA3937_RS03080at 679.468 kb on - strand, within DDA3937_RS03080at 679.478 kb on + strand, within DDA3937_RS03080at 679.478 kb on + strand, within DDA3937_RS03080at 679.513 kb on + strand, within DDA3937_RS03080at 679.513 kb on + strand, within DDA3937_RS03080at 679.514 kb on - strand, within DDA3937_RS03080at 679.540 kb on + strand, within DDA3937_RS03080at 679.574 kb on + strand, within DDA3937_RS03080at 679.574 kb on + strand, within DDA3937_RS03080at 679.574 kb on + strand, within DDA3937_RS03080at 679.574 kb on + strand, within DDA3937_RS03080at 679.575 kb on - strand, within DDA3937_RS03080at 679.575 kb on - strand, within DDA3937_RS03080at 679.575 kb on - strand, within DDA3937_RS03080at 679.575 kb on - strand, within DDA3937_RS03080at 679.575 kb on - strand, within DDA3937_RS03080at 679.575 kb on - strand, within DDA3937_RS03080at 679.575 kb on - strand, within DDA3937_RS03080at 679.705 kb on + strand, within DDA3937_RS03080at 679.706 kb on - strand, within DDA3937_RS03080at 679.760 kb on + strand, within DDA3937_RS03080at 679.760 kb on + strand, within DDA3937_RS03080at 679.761 kb on - strand, within DDA3937_RS03080at 679.761 kb on - strand, within DDA3937_RS03080at 679.853 kb on - strandat 679.853 kb on - strandat 680.215 kb on - strand, within DDA3937_RS03085at 680.299 kb on + strandat 680.322 kb on + strandat 680.327 kb on + strandat 680.327 kb on + strandat 680.327 kb on + strandat 680.327 kb on + strandat 680.327 kb on + strandat 680.327 kb on + strandat 680.327 kb on + strandat 680.327 kb on + strandat 680.328 kb on - strandat 680.328 kb on - strandat 680.328 kb on - strandat 680.342 kb on + strandat 680.342 kb on + strandat 680.355 kb on + strandat 680.356 kb on - strandat 680.356 kb on - strandat 680.415 kb on + strandat 680.429 kb on + strandat 680.430 kb on - strandat 680.430 kb on - strandat 680.445 kb on + strandat 680.445 kb on + strandat 680.445 kb on + strandat 680.448 kb on + strandat 680.448 kb on + strandat 680.463 kb on - strandat 680.489 kb on + strandat 680.545 kb on + strandat 680.546 kb on - strandat 680.690 kb on + strandat 680.691 kb on - strandat 680.691 kb on - strandat 680.691 kb on - strandat 680.702 kb on - strandat 680.706 kb on - strandat 680.706 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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678,458 + +2.5
678,459 - -0.3
678,886 + +0.7
678,887 - -0.5
678,887 - +1.0
678,972 + +0.9
679,013 + +0.8
679,026 + DDA3937_RS03080 0.11 +0.4
679,026 + DDA3937_RS03080 0.11 +1.2
679,026 + DDA3937_RS03080 0.11 -0.2
679,027 - DDA3937_RS03080 0.11 +0.6
679,120 + DDA3937_RS03080 0.21 +0.4
679,120 + DDA3937_RS03080 0.21 +0.2
679,120 + DDA3937_RS03080 0.21 +1.3
679,137 + DDA3937_RS03080 0.23 +0.3
679,179 + DDA3937_RS03080 0.27 +0.6
679,179 + DDA3937_RS03080 0.27 +1.9
679,180 - DDA3937_RS03080 0.27 +0.4
679,294 + DDA3937_RS03080 0.39 -1.4
679,294 + DDA3937_RS03080 0.39 +2.6
679,294 + DDA3937_RS03080 0.39 +0.7
679,295 - DDA3937_RS03080 0.39 +2.2
679,295 - DDA3937_RS03080 0.39 +1.0
679,309 + DDA3937_RS03080 0.41 -0.2
679,310 - DDA3937_RS03080 0.41 +0.7
679,310 - DDA3937_RS03080 0.41 +1.8
679,310 - DDA3937_RS03080 0.41 +1.0
679,327 + DDA3937_RS03080 0.43 -1.0
679,328 - DDA3937_RS03080 0.43 +1.1
679,333 + DDA3937_RS03080 0.43 +0.2
679,333 + DDA3937_RS03080 0.43 +1.7
679,334 - DDA3937_RS03080 0.43 +1.0
679,334 - DDA3937_RS03080 0.43 +1.5
679,374 + DDA3937_RS03080 0.48 +1.0
679,384 + DDA3937_RS03080 0.49 +0.5
679,384 + DDA3937_RS03080 0.49 -0.6
679,384 + DDA3937_RS03080 0.49 +3.4
679,384 + DDA3937_RS03080 0.49 +1.3
679,385 - DDA3937_RS03080 0.49 -0.8
679,385 - DDA3937_RS03080 0.49 +1.1
679,385 - DDA3937_RS03080 0.49 -1.4
679,385 - DDA3937_RS03080 0.49 +1.4
679,453 + DDA3937_RS03080 0.56 -0.2
679,453 + DDA3937_RS03080 0.56 +2.3
679,453 + DDA3937_RS03080 0.56 +1.0
679,453 + DDA3937_RS03080 0.56 +0.4
679,453 + DDA3937_RS03080 0.56 +0.9
679,453 + DDA3937_RS03080 0.56 +1.7
679,453 + DDA3937_RS03080 0.56 +1.9
679,453 + DDA3937_RS03080 0.56 +0.0
679,453 + DDA3937_RS03080 0.56 +0.4
679,453 + DDA3937_RS03080 0.56 +2.1
679,454 - DDA3937_RS03080 0.56 +1.0
679,454 - DDA3937_RS03080 0.56 -1.0
679,454 - DDA3937_RS03080 0.56 +0.7
679,454 - DDA3937_RS03080 0.56 -0.0
679,454 - DDA3937_RS03080 0.56 +0.0
679,467 + DDA3937_RS03080 0.57 +1.1
679,467 + DDA3937_RS03080 0.57 +0.1
679,468 - DDA3937_RS03080 0.57 -0.1
679,478 + DDA3937_RS03080 0.58 +1.4
679,478 + DDA3937_RS03080 0.58 +1.4
679,513 + DDA3937_RS03080 0.62 +1.1
679,513 + DDA3937_RS03080 0.62 +1.1
679,514 - DDA3937_RS03080 0.62 +1.4
679,540 + DDA3937_RS03080 0.65 +1.7
679,574 + DDA3937_RS03080 0.68 +1.0
679,574 + DDA3937_RS03080 0.68 +0.4
679,574 + DDA3937_RS03080 0.68 +2.7
679,574 + DDA3937_RS03080 0.68 +1.4
679,575 - DDA3937_RS03080 0.69 +0.7
679,575 - DDA3937_RS03080 0.69 +0.0
679,575 - DDA3937_RS03080 0.69 +1.1
679,575 - DDA3937_RS03080 0.69 +1.9
679,575 - DDA3937_RS03080 0.69 -0.9
679,575 - DDA3937_RS03080 0.69 -0.0
679,575 - DDA3937_RS03080 0.69 -0.8
679,705 + DDA3937_RS03080 0.82 +1.4
679,706 - DDA3937_RS03080 0.82 -0.6
679,760 + DDA3937_RS03080 0.88 +0.3
679,760 + DDA3937_RS03080 0.88 +2.0
679,761 - DDA3937_RS03080 0.88 +0.3
679,761 - DDA3937_RS03080 0.88 +2.6
679,853 - -2.6
679,853 - +0.7
680,215 - DDA3937_RS03085 0.86 +0.3
680,299 + +0.0
680,322 + +2.0
680,327 + +2.0
680,327 + -1.1
680,327 + +0.4
680,327 + +0.9
680,327 + -1.5
680,327 + -0.6
680,327 + -1.3
680,327 + -0.3
680,328 - -0.4
680,328 - +0.0
680,328 - -0.1
680,342 + -1.1
680,342 + +0.4
680,355 + +0.7
680,356 - +1.3
680,356 - +3.5
680,415 + -0.8
680,429 + -1.9
680,430 - +0.4
680,430 - +0.0
680,445 + -1.2
680,445 + -2.8
680,445 + -2.0
680,448 + -2.1
680,448 + -1.4
680,463 - +0.0
680,489 + +1.5
680,545 + -0.3
680,546 - -1.0
680,690 + +2.0
680,691 - +0.3
680,691 - -0.5
680,691 - -0.8
680,702 - -1.3
680,706 - +3.0
680,706 - +0.5

Or see this region's nucleotide sequence