Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02890 and DDA3937_RS02895 are separated by 89 nucleotides DDA3937_RS02895 and DDA3937_RS02900 are separated by 280 nucleotides
DDA3937_RS02890: DDA3937_RS02890 - FAD:protein FMN transferase ApbE, at 638,002 to 639,051
_RS02890
DDA3937_RS02895: DDA3937_RS02895 - 2-isopropylmalate synthase, at 639,141 to 640,835
_RS02895
DDA3937_RS02900: DDA3937_RS02900 - helix-turn-helix transcriptional regulator, at 641,116 to 641,919
_RS02900
Position (kb) 639
640
641 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 638.180 kb on + strand, within DDA3937_RS02890 at 638.180 kb on + strand, within DDA3937_RS02890 at 638.233 kb on + strand, within DDA3937_RS02890 at 638.239 kb on - strand, within DDA3937_RS02890 at 638.262 kb on + strand, within DDA3937_RS02890 at 638.487 kb on - strand, within DDA3937_RS02890 at 638.536 kb on + strand, within DDA3937_RS02890 at 638.536 kb on + strand, within DDA3937_RS02890 at 638.536 kb on + strand, within DDA3937_RS02890 at 638.537 kb on - strand, within DDA3937_RS02890 at 638.537 kb on - strand, within DDA3937_RS02890 at 638.537 kb on - strand, within DDA3937_RS02890 at 638.617 kb on + strand at 638.618 kb on - strand, within DDA3937_RS02890 at 638.757 kb on + strand, within DDA3937_RS02890 at 638.757 kb on + strand, within DDA3937_RS02890 at 638.757 kb on + strand, within DDA3937_RS02890 at 638.757 kb on + strand, within DDA3937_RS02890 at 638.758 kb on - strand, within DDA3937_RS02890 at 638.771 kb on - strand, within DDA3937_RS02890 at 638.779 kb on + strand, within DDA3937_RS02890 at 638.804 kb on - strand, within DDA3937_RS02890 at 638.975 kb on + strand at 638.975 kb on + strand at 638.975 kb on + strand at 638.976 kb on - strand at 638.976 kb on - strand at 639.050 kb on - strand at 639.095 kb on + strand at 639.095 kb on + strand at 639.095 kb on + strand at 639.095 kb on + strand at 639.095 kb on + strand at 639.095 kb on + strand at 639.096 kb on - strand at 639.096 kb on - strand at 639.096 kb on - strand at 639.103 kb on + strand at 639.103 kb on + strand at 639.104 kb on - strand at 639.108 kb on + strand at 639.108 kb on + strand at 639.108 kb on + strand at 639.108 kb on + strand at 639.109 kb on - strand at 639.109 kb on - strand at 639.109 kb on - strand at 639.109 kb on - strand at 639.109 kb on - strand at 639.109 kb on - strand at 639.109 kb on - strand at 639.109 kb on - strand at 639.109 kb on - strand at 639.109 kb on - strand at 639.109 kb on - strand at 639.109 kb on - strand at 639.109 kb on - strand at 639.189 kb on + strand at 639.189 kb on + strand at 639.190 kb on - strand at 639.221 kb on + strand at 639.221 kb on + strand at 639.221 kb on + strand at 639.221 kb on + strand at 639.222 kb on - strand at 639.222 kb on - strand at 639.222 kb on - strand at 639.222 kb on - strand at 639.222 kb on - strand at 639.222 kb on - strand at 639.222 kb on - strand at 639.222 kb on - strand at 639.252 kb on + strand at 639.325 kb on + strand, within DDA3937_RS02895 at 639.325 kb on + strand, within DDA3937_RS02895 at 639.325 kb on + strand, within DDA3937_RS02895 at 639.326 kb on - strand, within DDA3937_RS02895 at 639.326 kb on - strand, within DDA3937_RS02895 at 639.326 kb on - strand, within DDA3937_RS02895 at 639.326 kb on - strand, within DDA3937_RS02895 at 639.326 kb on - strand, within DDA3937_RS02895 at 639.339 kb on + strand, within DDA3937_RS02895 at 639.419 kb on + strand, within DDA3937_RS02895 at 639.419 kb on + strand, within DDA3937_RS02895 at 639.419 kb on + strand, within DDA3937_RS02895 at 639.420 kb on - strand, within DDA3937_RS02895 at 639.420 kb on - strand, within DDA3937_RS02895 at 639.420 kb on - strand, within DDA3937_RS02895 at 639.440 kb on + strand, within DDA3937_RS02895 at 639.441 kb on - strand, within DDA3937_RS02895 at 639.456 kb on - strand, within DDA3937_RS02895 at 639.485 kb on + strand, within DDA3937_RS02895 at 639.485 kb on + strand, within DDA3937_RS02895 at 639.486 kb on - strand, within DDA3937_RS02895 at 639.486 kb on - strand, within DDA3937_RS02895 at 639.486 kb on - strand, within DDA3937_RS02895 at 639.486 kb on - strand, within DDA3937_RS02895 at 639.517 kb on + strand, within DDA3937_RS02895 at 639.517 kb on + strand, within DDA3937_RS02895 at 639.517 kb on + strand, within DDA3937_RS02895 at 639.517 kb on + strand, within DDA3937_RS02895 at 639.517 kb on + strand, within DDA3937_RS02895 at 639.517 kb on + strand, within DDA3937_RS02895 at 639.517 kb on + strand, within DDA3937_RS02895 at 639.517 kb on + strand, within DDA3937_RS02895 at 639.517 kb on + strand, within DDA3937_RS02895 at 639.517 kb on + strand, within DDA3937_RS02895 at 639.518 kb on - strand, within DDA3937_RS02895 at 639.518 kb on - strand, within DDA3937_RS02895 at 639.518 kb on - strand, within DDA3937_RS02895 at 639.518 kb on - strand at 639.518 kb on - strand, within DDA3937_RS02895 at 639.518 kb on - strand, within DDA3937_RS02895 at 639.518 kb on - strand, within DDA3937_RS02895 at 639.518 kb on - strand, within DDA3937_RS02895 at 639.540 kb on + strand, within DDA3937_RS02895 at 639.540 kb on + strand, within DDA3937_RS02895 at 639.540 kb on + strand, within DDA3937_RS02895 at 639.541 kb on - strand at 639.541 kb on - strand, within DDA3937_RS02895 at 639.541 kb on - strand, within DDA3937_RS02895 at 639.588 kb on + strand, within DDA3937_RS02895 at 639.588 kb on + strand, within DDA3937_RS02895 at 639.589 kb on - strand at 639.589 kb on - strand, within DDA3937_RS02895 at 639.589 kb on - strand, within DDA3937_RS02895 at 639.594 kb on - strand, within DDA3937_RS02895 at 639.606 kb on + strand, within DDA3937_RS02895 at 639.606 kb on + strand, within DDA3937_RS02895 at 639.606 kb on + strand, within DDA3937_RS02895 at 639.606 kb on + strand, within DDA3937_RS02895 at 639.607 kb on - strand, within DDA3937_RS02895 at 639.648 kb on + strand, within DDA3937_RS02895 at 639.649 kb on - strand, within DDA3937_RS02895 at 639.701 kb on + strand, within DDA3937_RS02895 at 639.701 kb on + strand, within DDA3937_RS02895 at 639.702 kb on - strand, within DDA3937_RS02895 at 639.706 kb on + strand, within DDA3937_RS02895 at 639.706 kb on + strand, within DDA3937_RS02895 at 639.706 kb on + strand, within DDA3937_RS02895 at 639.706 kb on + strand, within DDA3937_RS02895 at 639.706 kb on + strand, within DDA3937_RS02895 at 639.706 kb on + strand, within DDA3937_RS02895 at 639.707 kb on - strand, within DDA3937_RS02895 at 639.707 kb on - strand, within DDA3937_RS02895 at 639.707 kb on - strand, within DDA3937_RS02895 at 639.707 kb on - strand at 639.710 kb on + strand, within DDA3937_RS02895 at 639.710 kb on + strand, within DDA3937_RS02895 at 639.710 kb on + strand, within DDA3937_RS02895 at 639.711 kb on - strand, within DDA3937_RS02895 at 639.742 kb on + strand, within DDA3937_RS02895 at 639.742 kb on + strand, within DDA3937_RS02895 at 639.742 kb on + strand, within DDA3937_RS02895 at 639.743 kb on - strand, within DDA3937_RS02895 at 639.743 kb on - strand, within DDA3937_RS02895 at 639.787 kb on + strand, within DDA3937_RS02895 at 639.787 kb on + strand, within DDA3937_RS02895 at 639.788 kb on - strand, within DDA3937_RS02895 at 639.788 kb on - strand, within DDA3937_RS02895 at 639.788 kb on - strand, within DDA3937_RS02895 at 639.858 kb on + strand, within DDA3937_RS02895 at 639.859 kb on - strand, within DDA3937_RS02895 at 639.859 kb on - strand, within DDA3937_RS02895 at 639.859 kb on - strand, within DDA3937_RS02895 at 639.862 kb on + strand, within DDA3937_RS02895 at 639.862 kb on + strand, within DDA3937_RS02895 at 639.863 kb on - strand, within DDA3937_RS02895 at 639.893 kb on + strand, within DDA3937_RS02895 at 639.962 kb on + strand, within DDA3937_RS02895 at 639.962 kb on + strand, within DDA3937_RS02895 at 639.962 kb on + strand, within DDA3937_RS02895 at 639.963 kb on - strand, within DDA3937_RS02895 at 639.964 kb on + strand, within DDA3937_RS02895 at 639.964 kb on + strand, within DDA3937_RS02895 at 639.965 kb on - strand, within DDA3937_RS02895 at 639.979 kb on - strand, within DDA3937_RS02895 at 640.178 kb on + strand, within DDA3937_RS02895 at 640.185 kb on - strand, within DDA3937_RS02895 at 640.316 kb on - strand, within DDA3937_RS02895 at 640.453 kb on + strand, within DDA3937_RS02895 at 640.453 kb on + strand, within DDA3937_RS02895 at 640.454 kb on - strand, within DDA3937_RS02895 at 640.461 kb on + strand, within DDA3937_RS02895 at 640.462 kb on - strand, within DDA3937_RS02895 at 640.462 kb on - strand, within DDA3937_RS02895 at 640.588 kb on - strand, within DDA3937_RS02895 at 640.650 kb on + strand, within DDA3937_RS02895 at 640.650 kb on + strand, within DDA3937_RS02895 at 640.723 kb on - strand at 640.723 kb on - strand at 640.760 kb on + strand at 640.761 kb on - strand at 640.761 kb on - strand at 640.974 kb on + strand at 640.975 kb on - strand at 640.997 kb on + strand at 640.997 kb on + strand at 640.997 kb on + strand at 640.997 kb on + strand at 640.997 kb on + strand at 640.998 kb on - strand at 640.998 kb on - strand at 640.998 kb on - strand at 640.998 kb on - strand at 640.998 kb on - strand at 641.012 kb on + strand at 641.012 kb on + strand at 641.012 kb on + strand at 641.013 kb on - strand at 641.013 kb on - strand at 641.013 kb on - strand at 641.032 kb on - strand at 641.043 kb on + strand at 641.044 kb on - strand at 641.064 kb on - strand at 641.067 kb on + strand at 641.068 kb on - strand at 641.107 kb on + strand at 641.189 kb on + strand at 641.190 kb on - strand at 641.190 kb on - strand at 641.263 kb on + strand, within DDA3937_RS02900 at 641.264 kb on - strand, within DDA3937_RS02900 at 641.264 kb on - strand, within DDA3937_RS02900 at 641.264 kb on - strand, within DDA3937_RS02900 at 641.363 kb on + strand, within DDA3937_RS02900 at 641.363 kb on + strand, within DDA3937_RS02900 at 641.364 kb on - strand, within DDA3937_RS02900 at 641.589 kb on - strand, within DDA3937_RS02900 at 641.671 kb on - strand, within DDA3937_RS02900 at 641.703 kb on + strand, within DDA3937_RS02900 at 641.792 kb on + strand, within DDA3937_RS02900
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 638,180 + DDA3937_RS02890 0.17 -1.3 638,180 + DDA3937_RS02890 0.17 +0.5 638,233 + DDA3937_RS02890 0.22 -0.8 638,239 - DDA3937_RS02890 0.23 -0.2 638,262 + DDA3937_RS02890 0.25 -0.9 638,487 - DDA3937_RS02890 0.46 -0.9 638,536 + DDA3937_RS02890 0.51 +0.4 638,536 + DDA3937_RS02890 0.51 -2.1 638,536 + DDA3937_RS02890 0.51 -0.9 638,537 - DDA3937_RS02890 0.51 -2.1 638,537 - DDA3937_RS02890 0.51 +0.1 638,537 - DDA3937_RS02890 0.51 -0.9 638,617 + +0.1 638,618 - DDA3937_RS02890 0.59 +0.4 638,757 + DDA3937_RS02890 0.72 -0.3 638,757 + DDA3937_RS02890 0.72 +0.9 638,757 + DDA3937_RS02890 0.72 -1.3 638,757 + DDA3937_RS02890 0.72 +1.9 638,758 - DDA3937_RS02890 0.72 +1.1 638,771 - DDA3937_RS02890 0.73 -0.9 638,779 + DDA3937_RS02890 0.74 -1.4 638,804 - DDA3937_RS02890 0.76 -2.0 638,975 + -0.1 638,975 + -1.5 638,975 + +2.1 638,976 - -3.1 638,976 - -0.4 639,050 - -1.8 639,095 + -0.5 639,095 + -1.4 639,095 + -0.3 639,095 + -0.2 639,095 + +0.3 639,095 + -2.6 639,096 - -0.8 639,096 - -0.4 639,096 - -0.0 639,103 + -2.9 639,103 + -1.4 639,104 - -0.9 639,108 + +1.1 639,108 + +0.6 639,108 + +0.9 639,108 + -0.5 639,109 - -1.1 639,109 - -0.9 639,109 - -0.2 639,109 - +1.6 639,109 - -0.7 639,109 - -0.8 639,109 - +1.7 639,109 - -0.6 639,109 - +1.0 639,109 - +0.6 639,109 - -0.9 639,109 - -1.5 639,109 - +0.5 639,189 + -1.2 639,189 + -2.1 639,190 - -0.3 639,221 + -1.5 639,221 + -2.8 639,221 + +0.1 639,221 + -0.9 639,222 - -0.8 639,222 - +2.6 639,222 - +1.2 639,222 - +0.1 639,222 - -1.0 639,222 - -1.9 639,222 - +1.1 639,222 - +0.1 639,252 + -2.4 639,325 + DDA3937_RS02895 0.11 -0.8 639,325 + DDA3937_RS02895 0.11 -0.3 639,325 + DDA3937_RS02895 0.11 -0.4 639,326 - DDA3937_RS02895 0.11 -3.2 639,326 - DDA3937_RS02895 0.11 -3.2 639,326 - DDA3937_RS02895 0.11 -0.4 639,326 - DDA3937_RS02895 0.11 -0.3 639,326 - DDA3937_RS02895 0.11 -1.5 639,339 + DDA3937_RS02895 0.12 -0.3 639,419 + DDA3937_RS02895 0.16 -0.5 639,419 + DDA3937_RS02895 0.16 -0.3 639,419 + DDA3937_RS02895 0.16 -0.3 639,420 - DDA3937_RS02895 0.16 -0.2 639,420 - DDA3937_RS02895 0.16 +0.0 639,420 - DDA3937_RS02895 0.16 +0.2 639,440 + DDA3937_RS02895 0.18 +0.8 639,441 - DDA3937_RS02895 0.18 -0.2 639,456 - DDA3937_RS02895 0.19 -1.5 639,485 + DDA3937_RS02895 0.20 -1.9 639,485 + DDA3937_RS02895 0.20 -0.7 639,486 - DDA3937_RS02895 0.20 -2.8 639,486 - DDA3937_RS02895 0.20 +0.2 639,486 - DDA3937_RS02895 0.20 -0.3 639,486 - DDA3937_RS02895 0.20 -1.9 639,517 + DDA3937_RS02895 0.22 -0.8 639,517 + DDA3937_RS02895 0.22 +1.6 639,517 + DDA3937_RS02895 0.22 +0.4 639,517 + DDA3937_RS02895 0.22 -0.6 639,517 + DDA3937_RS02895 0.22 -1.4 639,517 + DDA3937_RS02895 0.22 -2.3 639,517 + DDA3937_RS02895 0.22 -1.3 639,517 + DDA3937_RS02895 0.22 -0.0 639,517 + DDA3937_RS02895 0.22 -0.9 639,517 + DDA3937_RS02895 0.22 +0.7 639,518 - DDA3937_RS02895 0.22 -2.7 639,518 - DDA3937_RS02895 0.22 -3.2 639,518 - DDA3937_RS02895 0.22 -0.4 639,518 - +2.1 639,518 - DDA3937_RS02895 0.22 -1.6 639,518 - DDA3937_RS02895 0.22 +0.9 639,518 - DDA3937_RS02895 0.22 -1.3 639,518 - DDA3937_RS02895 0.22 -1.4 639,540 + DDA3937_RS02895 0.24 -0.5 639,540 + DDA3937_RS02895 0.24 +1.8 639,540 + DDA3937_RS02895 0.24 -0.5 639,541 - +0.5 639,541 - DDA3937_RS02895 0.24 +0.1 639,541 - DDA3937_RS02895 0.24 -0.7 639,588 + DDA3937_RS02895 0.26 -0.1 639,588 + DDA3937_RS02895 0.26 +1.1 639,589 - +0.5 639,589 - DDA3937_RS02895 0.26 -1.5 639,589 - DDA3937_RS02895 0.26 -0.8 639,594 - DDA3937_RS02895 0.27 -1.3 639,606 + DDA3937_RS02895 0.27 -0.1 639,606 + DDA3937_RS02895 0.27 -0.6 639,606 + DDA3937_RS02895 0.27 -1.4 639,606 + DDA3937_RS02895 0.27 -0.8 639,607 - DDA3937_RS02895 0.27 +1.0 639,648 + DDA3937_RS02895 0.30 -1.2 639,649 - DDA3937_RS02895 0.30 -1.2 639,701 + DDA3937_RS02895 0.33 -0.9 639,701 + DDA3937_RS02895 0.33 -0.1 639,702 - DDA3937_RS02895 0.33 +1.3 639,706 + DDA3937_RS02895 0.33 +0.3 639,706 + DDA3937_RS02895 0.33 -1.0 639,706 + DDA3937_RS02895 0.33 -0.8 639,706 + DDA3937_RS02895 0.33 -0.9 639,706 + DDA3937_RS02895 0.33 -1.5 639,706 + DDA3937_RS02895 0.33 -2.3 639,707 - DDA3937_RS02895 0.33 -0.3 639,707 - DDA3937_RS02895 0.33 -1.3 639,707 - DDA3937_RS02895 0.33 -0.7 639,707 - +1.1 639,710 + DDA3937_RS02895 0.34 -0.9 639,710 + DDA3937_RS02895 0.34 +0.1 639,710 + DDA3937_RS02895 0.34 +0.1 639,711 - DDA3937_RS02895 0.34 +0.1 639,742 + DDA3937_RS02895 0.35 -2.5 639,742 + DDA3937_RS02895 0.35 +0.5 639,742 + DDA3937_RS02895 0.35 -1.3 639,743 - DDA3937_RS02895 0.36 +0.0 639,743 - DDA3937_RS02895 0.36 -2.9 639,787 + DDA3937_RS02895 0.38 -0.3 639,787 + DDA3937_RS02895 0.38 -1.3 639,788 - DDA3937_RS02895 0.38 -1.4 639,788 - DDA3937_RS02895 0.38 -1.6 639,788 - DDA3937_RS02895 0.38 -0.1 639,858 + DDA3937_RS02895 0.42 -0.7 639,859 - DDA3937_RS02895 0.42 +1.5 639,859 - DDA3937_RS02895 0.42 -0.4 639,859 - DDA3937_RS02895 0.42 +0.1 639,862 + DDA3937_RS02895 0.43 +1.2 639,862 + DDA3937_RS02895 0.43 -2.3 639,863 - DDA3937_RS02895 0.43 +1.1 639,893 + DDA3937_RS02895 0.44 +1.1 639,962 + DDA3937_RS02895 0.48 -0.6 639,962 + DDA3937_RS02895 0.48 -2.2 639,962 + DDA3937_RS02895 0.48 -3.3 639,963 - DDA3937_RS02895 0.48 -1.6 639,964 + DDA3937_RS02895 0.49 +0.1 639,964 + DDA3937_RS02895 0.49 -2.3 639,965 - DDA3937_RS02895 0.49 -1.2 639,979 - DDA3937_RS02895 0.49 -0.3 640,178 + DDA3937_RS02895 0.61 +0.7 640,185 - DDA3937_RS02895 0.62 +1.5 640,316 - DDA3937_RS02895 0.69 -3.2 640,453 + DDA3937_RS02895 0.77 -3.0 640,453 + DDA3937_RS02895 0.77 -2.5 640,454 - DDA3937_RS02895 0.77 -1.1 640,461 + DDA3937_RS02895 0.78 -1.1 640,462 - DDA3937_RS02895 0.78 +0.3 640,462 - DDA3937_RS02895 0.78 +0.1 640,588 - DDA3937_RS02895 0.85 +0.1 640,650 + DDA3937_RS02895 0.89 -0.5 640,650 + DDA3937_RS02895 0.89 -0.6 640,723 - -1.4 640,723 - -0.6 640,760 + -2.2 640,761 - +0.7 640,761 - -2.3 640,974 + -2.5 640,975 - -0.1 640,997 + -1.5 640,997 + +0.2 640,997 + +1.2 640,997 + -1.6 640,997 + -0.6 640,998 - -2.5 640,998 - -2.1 640,998 - +0.2 640,998 - -0.8 640,998 - -2.8 641,012 + +0.5 641,012 + +1.0 641,012 + -0.5 641,013 - +0.1 641,013 - +1.8 641,013 - -1.3 641,032 - +0.4 641,043 + -1.6 641,044 - +1.3 641,064 - +0.8 641,067 + +0.1 641,068 - -2.9 641,107 + +0.1 641,189 + +1.1 641,190 - -1.9 641,190 - -0.2 641,263 + DDA3937_RS02900 0.18 +0.6 641,264 - DDA3937_RS02900 0.18 +0.9 641,264 - DDA3937_RS02900 0.18 -1.1 641,264 - DDA3937_RS02900 0.18 -0.9 641,363 + DDA3937_RS02900 0.31 -1.4 641,363 + DDA3937_RS02900 0.31 -0.9 641,364 - DDA3937_RS02900 0.31 +1.1 641,589 - DDA3937_RS02900 0.59 +1.6 641,671 - DDA3937_RS02900 0.69 +0.9 641,703 + DDA3937_RS02900 0.73 +1.1 641,792 + DDA3937_RS02900 0.84 -3.0
Or see this region's nucleotide sequence