Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS02610

Experiment: PDB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS02605 and DDA3937_RS02610 are separated by 15 nucleotidesDDA3937_RS02610 and DDA3937_RS02615 are separated by 38 nucleotides DDA3937_RS02605: DDA3937_RS02605 - glycosyltransferase family 4 protein, at 577,952 to 579,067 _RS02605 DDA3937_RS02610: DDA3937_RS02610 - hypothetical protein, at 579,083 to 579,490 _RS02610 DDA3937_RS02615: DDA3937_RS02615 - DUF4832 domain-containing protein, at 579,529 to 580,923 _RS02615 Position (kb) 579 580Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 578.090 kb on + strand, within DDA3937_RS02605at 578.091 kb on - strand, within DDA3937_RS02605at 578.095 kb on + strand, within DDA3937_RS02605at 578.096 kb on - strandat 578.096 kb on - strand, within DDA3937_RS02605at 578.163 kb on + strand, within DDA3937_RS02605at 578.172 kb on + strand, within DDA3937_RS02605at 578.173 kb on - strand, within DDA3937_RS02605at 578.240 kb on - strand, within DDA3937_RS02605at 578.315 kb on + strand, within DDA3937_RS02605at 578.316 kb on - strand, within DDA3937_RS02605at 578.316 kb on - strand, within DDA3937_RS02605at 578.355 kb on + strandat 578.355 kb on + strand, within DDA3937_RS02605at 578.399 kb on + strand, within DDA3937_RS02605at 578.417 kb on - strand, within DDA3937_RS02605at 578.426 kb on - strand, within DDA3937_RS02605at 578.441 kb on + strand, within DDA3937_RS02605at 578.442 kb on - strand, within DDA3937_RS02605at 578.464 kb on + strand, within DDA3937_RS02605at 578.465 kb on - strand, within DDA3937_RS02605at 578.468 kb on + strand, within DDA3937_RS02605at 578.468 kb on + strand, within DDA3937_RS02605at 578.469 kb on - strand, within DDA3937_RS02605at 578.469 kb on - strand, within DDA3937_RS02605at 578.469 kb on - strand, within DDA3937_RS02605at 578.497 kb on - strand, within DDA3937_RS02605at 578.509 kb on + strand, within DDA3937_RS02605at 578.552 kb on + strand, within DDA3937_RS02605at 578.552 kb on + strand, within DDA3937_RS02605at 578.603 kb on - strand, within DDA3937_RS02605at 578.675 kb on + strand, within DDA3937_RS02605at 578.676 kb on - strand, within DDA3937_RS02605at 578.676 kb on - strand, within DDA3937_RS02605at 578.677 kb on + strand, within DDA3937_RS02605at 578.677 kb on + strand, within DDA3937_RS02605at 578.677 kb on + strand, within DDA3937_RS02605at 578.678 kb on - strand, within DDA3937_RS02605at 578.678 kb on - strand, within DDA3937_RS02605at 578.678 kb on - strand, within DDA3937_RS02605at 578.678 kb on - strand, within DDA3937_RS02605at 578.678 kb on - strand, within DDA3937_RS02605at 578.721 kb on + strand, within DDA3937_RS02605at 578.721 kb on + strand, within DDA3937_RS02605at 578.721 kb on + strand, within DDA3937_RS02605at 578.773 kb on + strand, within DDA3937_RS02605at 578.795 kb on + strand, within DDA3937_RS02605at 578.914 kb on - strand, within DDA3937_RS02605at 578.988 kb on + strandat 578.988 kb on + strandat 578.997 kb on - strandat 578.998 kb on + strandat 578.998 kb on + strandat 578.998 kb on + strandat 579.036 kb on - strandat 579.125 kb on + strand, within DDA3937_RS02610at 579.161 kb on - strand, within DDA3937_RS02610at 579.238 kb on + strandat 579.238 kb on + strand, within DDA3937_RS02610at 579.239 kb on - strand, within DDA3937_RS02610at 579.269 kb on + strand, within DDA3937_RS02610at 579.270 kb on - strand, within DDA3937_RS02610at 579.270 kb on - strand, within DDA3937_RS02610at 579.327 kb on + strand, within DDA3937_RS02610at 579.391 kb on - strand, within DDA3937_RS02610at 579.401 kb on + strand, within DDA3937_RS02610at 579.401 kb on + strand, within DDA3937_RS02610at 579.401 kb on + strand, within DDA3937_RS02610at 579.401 kb on + strand, within DDA3937_RS02610at 579.401 kb on + strand, within DDA3937_RS02610at 579.401 kb on + strand, within DDA3937_RS02610at 579.401 kb on + strand, within DDA3937_RS02610at 579.402 kb on - strandat 579.402 kb on - strand, within DDA3937_RS02610at 579.402 kb on - strand, within DDA3937_RS02610at 579.402 kb on - strand, within DDA3937_RS02610at 579.402 kb on - strand, within DDA3937_RS02610at 579.402 kb on - strand, within DDA3937_RS02610at 579.402 kb on - strand, within DDA3937_RS02610at 579.402 kb on - strand, within DDA3937_RS02610at 579.402 kb on - strand, within DDA3937_RS02610at 579.402 kb on - strand, within DDA3937_RS02610at 579.402 kb on - strand, within DDA3937_RS02610at 579.409 kb on + strand, within DDA3937_RS02610at 579.409 kb on + strand, within DDA3937_RS02610at 579.409 kb on + strand, within DDA3937_RS02610at 579.409 kb on + strand, within DDA3937_RS02610at 579.409 kb on + strand, within DDA3937_RS02610at 579.410 kb on - strand, within DDA3937_RS02610at 579.410 kb on - strand, within DDA3937_RS02610at 579.410 kb on - strand, within DDA3937_RS02610at 579.424 kb on + strand, within DDA3937_RS02610at 579.450 kb on + strandat 579.516 kb on + strandat 579.516 kb on + strandat 579.516 kb on + strandat 579.516 kb on + strandat 579.517 kb on - strandat 579.526 kb on + strandat 579.526 kb on + strandat 579.526 kb on + strandat 579.526 kb on + strandat 579.526 kb on + strandat 579.526 kb on + strandat 579.526 kb on + strandat 579.526 kb on + strandat 579.526 kb on + strandat 579.527 kb on - strandat 579.527 kb on - strandat 579.527 kb on - strandat 579.527 kb on - strandat 579.551 kb on + strandat 579.551 kb on + strandat 579.564 kb on - strandat 579.564 kb on - strandat 579.595 kb on - strandat 579.672 kb on + strandat 579.675 kb on + strand, within DDA3937_RS02615at 579.675 kb on + strand, within DDA3937_RS02615at 579.721 kb on + strand, within DDA3937_RS02615at 579.721 kb on + strand, within DDA3937_RS02615at 579.721 kb on + strand, within DDA3937_RS02615at 579.721 kb on + strand, within DDA3937_RS02615at 579.722 kb on - strand, within DDA3937_RS02615at 579.722 kb on - strand, within DDA3937_RS02615at 579.722 kb on - strand, within DDA3937_RS02615at 579.734 kb on - strand, within DDA3937_RS02615at 579.766 kb on + strand, within DDA3937_RS02615at 579.767 kb on - strand, within DDA3937_RS02615at 579.767 kb on - strand, within DDA3937_RS02615at 579.789 kb on + strand, within DDA3937_RS02615at 579.789 kb on + strand, within DDA3937_RS02615at 579.790 kb on - strand, within DDA3937_RS02615at 579.837 kb on - strand, within DDA3937_RS02615at 579.843 kb on + strand, within DDA3937_RS02615at 579.903 kb on + strand, within DDA3937_RS02615at 579.904 kb on - strand, within DDA3937_RS02615at 579.904 kb on - strand, within DDA3937_RS02615at 579.966 kb on + strand, within DDA3937_RS02615at 579.973 kb on + strand, within DDA3937_RS02615at 579.973 kb on + strand, within DDA3937_RS02615at 579.973 kb on + strand, within DDA3937_RS02615at 579.974 kb on - strand, within DDA3937_RS02615at 579.975 kb on + strand, within DDA3937_RS02615at 579.975 kb on + strand, within DDA3937_RS02615at 579.975 kb on + strand, within DDA3937_RS02615at 579.975 kb on + strand, within DDA3937_RS02615at 579.976 kb on - strand, within DDA3937_RS02615at 579.976 kb on - strand, within DDA3937_RS02615at 580.009 kb on + strand, within DDA3937_RS02615at 580.010 kb on - strand, within DDA3937_RS02615at 580.017 kb on + strand, within DDA3937_RS02615at 580.017 kb on + strand, within DDA3937_RS02615at 580.017 kb on + strand, within DDA3937_RS02615at 580.018 kb on - strand, within DDA3937_RS02615at 580.018 kb on - strand, within DDA3937_RS02615at 580.033 kb on + strand, within DDA3937_RS02615at 580.034 kb on - strand, within DDA3937_RS02615at 580.034 kb on - strand, within DDA3937_RS02615at 580.034 kb on - strand, within DDA3937_RS02615at 580.034 kb on - strand, within DDA3937_RS02615at 580.034 kb on - strand, within DDA3937_RS02615at 580.034 kb on - strand, within DDA3937_RS02615at 580.034 kb on - strandat 580.034 kb on - strand, within DDA3937_RS02615at 580.036 kb on - strand, within DDA3937_RS02615at 580.038 kb on - strand, within DDA3937_RS02615at 580.095 kb on + strand, within DDA3937_RS02615at 580.096 kb on - strand, within DDA3937_RS02615at 580.096 kb on - strand, within DDA3937_RS02615at 580.114 kb on + strand, within DDA3937_RS02615at 580.114 kb on + strand, within DDA3937_RS02615at 580.115 kb on - strand, within DDA3937_RS02615at 580.115 kb on - strand, within DDA3937_RS02615at 580.138 kb on + strand, within DDA3937_RS02615at 580.150 kb on + strand, within DDA3937_RS02615at 580.266 kb on + strand, within DDA3937_RS02615at 580.347 kb on + strand, within DDA3937_RS02615at 580.393 kb on + strand, within DDA3937_RS02615at 580.393 kb on + strand, within DDA3937_RS02615at 580.393 kb on + strand, within DDA3937_RS02615at 580.393 kb on + strand, within DDA3937_RS02615at 580.393 kb on + strand, within DDA3937_RS02615at 580.393 kb on + strand, within DDA3937_RS02615at 580.394 kb on - strand, within DDA3937_RS02615at 580.394 kb on - strand, within DDA3937_RS02615at 580.394 kb on - strand, within DDA3937_RS02615at 580.394 kb on - strand, within DDA3937_RS02615at 580.394 kb on - strand, within DDA3937_RS02615at 580.394 kb on - strand, within DDA3937_RS02615at 580.395 kb on + strand, within DDA3937_RS02615at 580.396 kb on - strand, within DDA3937_RS02615at 580.396 kb on - strand, within DDA3937_RS02615at 580.396 kb on - strand, within DDA3937_RS02615at 580.396 kb on - strand, within DDA3937_RS02615at 580.396 kb on - strand, within DDA3937_RS02615at 580.396 kb on - strand, within DDA3937_RS02615at 580.396 kb on - strand, within DDA3937_RS02615at 580.396 kb on - strand, within DDA3937_RS02615at 580.396 kb on - strand, within DDA3937_RS02615at 580.396 kb on - strand, within DDA3937_RS02615at 580.423 kb on + strand, within DDA3937_RS02615at 580.424 kb on - strand, within DDA3937_RS02615at 580.425 kb on + strand, within DDA3937_RS02615at 580.426 kb on - strand, within DDA3937_RS02615at 580.426 kb on - strand, within DDA3937_RS02615

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PDB
remove
578,090 + DDA3937_RS02605 0.12 +1.5
578,091 - DDA3937_RS02605 0.12 +0.2
578,095 + DDA3937_RS02605 0.13 -0.9
578,096 - +2.1
578,096 - DDA3937_RS02605 0.13 -2.0
578,163 + DDA3937_RS02605 0.19 +1.3
578,172 + DDA3937_RS02605 0.20 -1.4
578,173 - DDA3937_RS02605 0.20 -0.9
578,240 - DDA3937_RS02605 0.26 -0.6
578,315 + DDA3937_RS02605 0.33 +1.6
578,316 - DDA3937_RS02605 0.33 +0.5
578,316 - DDA3937_RS02605 0.33 -1.1
578,355 + -0.2
578,355 + DDA3937_RS02605 0.36 -0.4
578,399 + DDA3937_RS02605 0.40 -0.5
578,417 - DDA3937_RS02605 0.42 -1.1
578,426 - DDA3937_RS02605 0.42 -2.6
578,441 + DDA3937_RS02605 0.44 +0.9
578,442 - DDA3937_RS02605 0.44 +0.7
578,464 + DDA3937_RS02605 0.46 -1.3
578,465 - DDA3937_RS02605 0.46 -0.2
578,468 + DDA3937_RS02605 0.46 -1.1
578,468 + DDA3937_RS02605 0.46 +0.1
578,469 - DDA3937_RS02605 0.46 -1.0
578,469 - DDA3937_RS02605 0.46 -0.2
578,469 - DDA3937_RS02605 0.46 -1.7
578,497 - DDA3937_RS02605 0.49 -2.3
578,509 + DDA3937_RS02605 0.50 +1.7
578,552 + DDA3937_RS02605 0.54 -1.0
578,552 + DDA3937_RS02605 0.54 -0.7
578,603 - DDA3937_RS02605 0.58 -1.1
578,675 + DDA3937_RS02605 0.65 -2.7
578,676 - DDA3937_RS02605 0.65 +1.1
578,676 - DDA3937_RS02605 0.65 -0.7
578,677 + DDA3937_RS02605 0.65 -0.6
578,677 + DDA3937_RS02605 0.65 +0.6
578,677 + DDA3937_RS02605 0.65 -2.1
578,678 - DDA3937_RS02605 0.65 -1.4
578,678 - DDA3937_RS02605 0.65 -0.6
578,678 - DDA3937_RS02605 0.65 +1.1
578,678 - DDA3937_RS02605 0.65 -0.3
578,678 - DDA3937_RS02605 0.65 -0.5
578,721 + DDA3937_RS02605 0.69 -0.2
578,721 + DDA3937_RS02605 0.69 -1.7
578,721 + DDA3937_RS02605 0.69 -0.7
578,773 + DDA3937_RS02605 0.74 +0.5
578,795 + DDA3937_RS02605 0.76 +0.1
578,914 - DDA3937_RS02605 0.86 -2.4
578,988 + +0.5
578,988 + +0.4
578,997 - -1.6
578,998 + +0.0
578,998 + -1.0
578,998 + +0.2
579,036 - -0.7
579,125 + DDA3937_RS02610 0.10 -0.7
579,161 - DDA3937_RS02610 0.19 -1.2
579,238 + +1.1
579,238 + DDA3937_RS02610 0.38 -1.4
579,239 - DDA3937_RS02610 0.38 -0.3
579,269 + DDA3937_RS02610 0.46 -1.0
579,270 - DDA3937_RS02610 0.46 -2.1
579,270 - DDA3937_RS02610 0.46 -2.5
579,327 + DDA3937_RS02610 0.60 -1.4
579,391 - DDA3937_RS02610 0.75 -0.7
579,401 + DDA3937_RS02610 0.78 +0.3
579,401 + DDA3937_RS02610 0.78 -0.5
579,401 + DDA3937_RS02610 0.78 -1.2
579,401 + DDA3937_RS02610 0.78 +2.1
579,401 + DDA3937_RS02610 0.78 +0.8
579,401 + DDA3937_RS02610 0.78 -1.1
579,401 + DDA3937_RS02610 0.78 +0.1
579,402 - +1.1
579,402 - DDA3937_RS02610 0.78 -2.0
579,402 - DDA3937_RS02610 0.78 +0.3
579,402 - DDA3937_RS02610 0.78 -1.2
579,402 - DDA3937_RS02610 0.78 +0.5
579,402 - DDA3937_RS02610 0.78 +1.1
579,402 - DDA3937_RS02610 0.78 -0.0
579,402 - DDA3937_RS02610 0.78 -2.7
579,402 - DDA3937_RS02610 0.78 -1.8
579,402 - DDA3937_RS02610 0.78 -1.1
579,402 - DDA3937_RS02610 0.78 -0.6
579,409 + DDA3937_RS02610 0.80 -1.8
579,409 + DDA3937_RS02610 0.80 +0.8
579,409 + DDA3937_RS02610 0.80 -1.1
579,409 + DDA3937_RS02610 0.80 -1.7
579,409 + DDA3937_RS02610 0.80 -0.9
579,410 - DDA3937_RS02610 0.80 -1.9
579,410 - DDA3937_RS02610 0.80 -3.2
579,410 - DDA3937_RS02610 0.80 -1.5
579,424 + DDA3937_RS02610 0.84 -2.6
579,450 + -0.4
579,516 + -0.0
579,516 + -2.8
579,516 + -0.5
579,516 + -0.7
579,517 - +0.3
579,526 + -2.4
579,526 + +0.5
579,526 + +0.1
579,526 + +1.0
579,526 + -0.2
579,526 + +2.3
579,526 + -0.1
579,526 + -0.5
579,526 + +1.2
579,527 - +1.2
579,527 - +3.1
579,527 - -1.2
579,527 - -2.8
579,551 + +0.8
579,551 + -0.5
579,564 - +1.1
579,564 - +2.7
579,595 - -2.2
579,672 + -0.2
579,675 + DDA3937_RS02615 0.10 -3.3
579,675 + DDA3937_RS02615 0.10 -1.2
579,721 + DDA3937_RS02615 0.14 +0.5
579,721 + DDA3937_RS02615 0.14 +0.9
579,721 + DDA3937_RS02615 0.14 -0.0
579,721 + DDA3937_RS02615 0.14 +2.1
579,722 - DDA3937_RS02615 0.14 +0.5
579,722 - DDA3937_RS02615 0.14 -0.0
579,722 - DDA3937_RS02615 0.14 +0.1
579,734 - DDA3937_RS02615 0.15 +0.5
579,766 + DDA3937_RS02615 0.17 +0.1
579,767 - DDA3937_RS02615 0.17 +1.3
579,767 - DDA3937_RS02615 0.17 +1.8
579,789 + DDA3937_RS02615 0.19 +0.9
579,789 + DDA3937_RS02615 0.19 -1.6
579,790 - DDA3937_RS02615 0.19 -0.7
579,837 - DDA3937_RS02615 0.22 -2.0
579,843 + DDA3937_RS02615 0.23 -1.2
579,903 + DDA3937_RS02615 0.27 +0.8
579,904 - DDA3937_RS02615 0.27 -2.3
579,904 - DDA3937_RS02615 0.27 +1.0
579,966 + DDA3937_RS02615 0.31 +0.5
579,973 + DDA3937_RS02615 0.32 +1.6
579,973 + DDA3937_RS02615 0.32 -2.8
579,973 + DDA3937_RS02615 0.32 -1.6
579,974 - DDA3937_RS02615 0.32 -1.9
579,975 + DDA3937_RS02615 0.32 -0.7
579,975 + DDA3937_RS02615 0.32 -1.9
579,975 + DDA3937_RS02615 0.32 -2.6
579,975 + DDA3937_RS02615 0.32 -0.9
579,976 - DDA3937_RS02615 0.32 +0.1
579,976 - DDA3937_RS02615 0.32 -2.1
580,009 + DDA3937_RS02615 0.34 +0.1
580,010 - DDA3937_RS02615 0.34 -0.7
580,017 + DDA3937_RS02615 0.35 -0.3
580,017 + DDA3937_RS02615 0.35 -0.7
580,017 + DDA3937_RS02615 0.35 +0.4
580,018 - DDA3937_RS02615 0.35 -1.4
580,018 - DDA3937_RS02615 0.35 -1.8
580,033 + DDA3937_RS02615 0.36 -0.5
580,034 - DDA3937_RS02615 0.36 +0.5
580,034 - DDA3937_RS02615 0.36 -2.0
580,034 - DDA3937_RS02615 0.36 -1.8
580,034 - DDA3937_RS02615 0.36 -1.4
580,034 - DDA3937_RS02615 0.36 -0.2
580,034 - DDA3937_RS02615 0.36 +1.1
580,034 - +1.1
580,034 - DDA3937_RS02615 0.36 +0.5
580,036 - DDA3937_RS02615 0.36 +0.5
580,038 - DDA3937_RS02615 0.36 +0.1
580,095 + DDA3937_RS02615 0.41 -1.1
580,096 - DDA3937_RS02615 0.41 +0.1
580,096 - DDA3937_RS02615 0.41 +1.8
580,114 + DDA3937_RS02615 0.42 -2.7
580,114 + DDA3937_RS02615 0.42 -2.2
580,115 - DDA3937_RS02615 0.42 -1.2
580,115 - DDA3937_RS02615 0.42 -0.4
580,138 + DDA3937_RS02615 0.44 -2.1
580,150 + DDA3937_RS02615 0.45 +1.0
580,266 + DDA3937_RS02615 0.53 -0.2
580,347 + DDA3937_RS02615 0.59 +0.4
580,393 + DDA3937_RS02615 0.62 -2.1
580,393 + DDA3937_RS02615 0.62 +1.1
580,393 + DDA3937_RS02615 0.62 +1.4
580,393 + DDA3937_RS02615 0.62 -1.5
580,393 + DDA3937_RS02615 0.62 +0.8
580,393 + DDA3937_RS02615 0.62 -1.4
580,394 - DDA3937_RS02615 0.62 -0.5
580,394 - DDA3937_RS02615 0.62 -0.2
580,394 - DDA3937_RS02615 0.62 -0.1
580,394 - DDA3937_RS02615 0.62 -3.1
580,394 - DDA3937_RS02615 0.62 -1.3
580,394 - DDA3937_RS02615 0.62 -0.9
580,395 + DDA3937_RS02615 0.62 +0.4
580,396 - DDA3937_RS02615 0.62 -1.2
580,396 - DDA3937_RS02615 0.62 -2.7
580,396 - DDA3937_RS02615 0.62 -1.2
580,396 - DDA3937_RS02615 0.62 +0.1
580,396 - DDA3937_RS02615 0.62 +1.1
580,396 - DDA3937_RS02615 0.62 -2.4
580,396 - DDA3937_RS02615 0.62 -1.6
580,396 - DDA3937_RS02615 0.62 +2.4
580,396 - DDA3937_RS02615 0.62 -3.4
580,396 - DDA3937_RS02615 0.62 +0.2
580,423 + DDA3937_RS02615 0.64 -0.9
580,424 - DDA3937_RS02615 0.64 -2.5
580,425 + DDA3937_RS02615 0.64 -0.5
580,426 - DDA3937_RS02615 0.64 -2.9
580,426 - DDA3937_RS02615 0.64 -1.4

Or see this region's nucleotide sequence