Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02555 and DDA3937_RS02560 are separated by 280 nucleotides DDA3937_RS02560 and DDA3937_RS02565 are separated by 400 nucleotides
DDA3937_RS02555: DDA3937_RS02555 - LacI family DNA-binding transcriptional regulator, at 564,864 to 565,886
_RS02555
DDA3937_RS02560: DDA3937_RS02560 - L-talarate/galactarate dehydratase, at 566,167 to 567,366
_RS02560
DDA3937_RS02565: DDA3937_RS02565 - undecaprenyl-phosphate glucose phosphotransferase, at 567,767 to 569,173
_RS02565
Position (kb) 566
567
568 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 565.168 kb on - strand, within DDA3937_RS02555 at 565.168 kb on - strand, within DDA3937_RS02555 at 565.334 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand at 565.336 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand, within DDA3937_RS02555 at 565.336 kb on + strand, within DDA3937_RS02555 at 565.337 kb on - strand, within DDA3937_RS02555 at 565.337 kb on - strand, within DDA3937_RS02555 at 565.337 kb on - strand, within DDA3937_RS02555 at 565.337 kb on - strand, within DDA3937_RS02555 at 565.337 kb on - strand, within DDA3937_RS02555 at 565.337 kb on - strand, within DDA3937_RS02555 at 565.337 kb on - strand, within DDA3937_RS02555 at 565.337 kb on - strand, within DDA3937_RS02555 at 565.455 kb on - strand, within DDA3937_RS02555 at 565.710 kb on - strand, within DDA3937_RS02555 at 565.710 kb on - strand, within DDA3937_RS02555 at 565.711 kb on + strand, within DDA3937_RS02555 at 565.711 kb on + strand, within DDA3937_RS02555 at 565.711 kb on + strand, within DDA3937_RS02555 at 565.712 kb on - strand, within DDA3937_RS02555 at 565.881 kb on - strand at 565.933 kb on + strand at 565.933 kb on + strand at 565.934 kb on - strand at 566.129 kb on - strand at 566.175 kb on - strand at 566.201 kb on - strand at 566.248 kb on - strand at 566.259 kb on + strand at 566.260 kb on - strand at 566.260 kb on - strand at 566.260 kb on - strand at 566.352 kb on + strand, within DDA3937_RS02560 at 566.353 kb on - strand, within DDA3937_RS02560 at 566.404 kb on + strand, within DDA3937_RS02560 at 566.404 kb on + strand, within DDA3937_RS02560 at 566.405 kb on - strand, within DDA3937_RS02560 at 566.434 kb on + strand, within DDA3937_RS02560 at 566.434 kb on + strand, within DDA3937_RS02560 at 566.434 kb on + strand, within DDA3937_RS02560 at 566.434 kb on + strand, within DDA3937_RS02560 at 566.434 kb on + strand, within DDA3937_RS02560 at 566.434 kb on + strand, within DDA3937_RS02560 at 566.434 kb on + strand, within DDA3937_RS02560 at 566.434 kb on + strand, within DDA3937_RS02560 at 566.435 kb on - strand, within DDA3937_RS02560 at 566.435 kb on - strand, within DDA3937_RS02560 at 566.460 kb on + strand, within DDA3937_RS02560 at 566.461 kb on - strand, within DDA3937_RS02560 at 566.501 kb on - strand, within DDA3937_RS02560 at 566.501 kb on - strand, within DDA3937_RS02560 at 566.607 kb on - strand, within DDA3937_RS02560 at 566.627 kb on + strand, within DDA3937_RS02560 at 566.659 kb on + strand, within DDA3937_RS02560 at 566.659 kb on + strand, within DDA3937_RS02560 at 566.659 kb on + strand, within DDA3937_RS02560 at 566.659 kb on + strand, within DDA3937_RS02560 at 566.660 kb on - strand, within DDA3937_RS02560 at 566.660 kb on - strand, within DDA3937_RS02560 at 566.769 kb on + strand, within DDA3937_RS02560 at 566.963 kb on + strand, within DDA3937_RS02560 at 567.238 kb on - strand, within DDA3937_RS02560 at 567.322 kb on - strand at 567.356 kb on - strand at 567.433 kb on - strand at 567.460 kb on - strand at 567.460 kb on - strand at 567.460 kb on - strand at 567.621 kb on + strand at 567.709 kb on - strand at 567.772 kb on + strand at 567.772 kb on + strand at 567.776 kb on - strand at 567.783 kb on + strand at 567.852 kb on + strand at 567.853 kb on - strand at 567.870 kb on + strand at 567.937 kb on + strand, within DDA3937_RS02565 at 567.957 kb on + strand, within DDA3937_RS02565 at 567.958 kb on - strand, within DDA3937_RS02565 at 567.958 kb on - strand, within DDA3937_RS02565 at 567.959 kb on + strand, within DDA3937_RS02565 at 567.960 kb on - strand, within DDA3937_RS02565 at 567.960 kb on - strand, within DDA3937_RS02565 at 568.021 kb on - strand, within DDA3937_RS02565 at 568.083 kb on + strand, within DDA3937_RS02565 at 568.102 kb on + strand, within DDA3937_RS02565 at 568.103 kb on - strand, within DDA3937_RS02565 at 568.103 kb on - strand, within DDA3937_RS02565 at 568.124 kb on + strand, within DDA3937_RS02565 at 568.131 kb on - strand, within DDA3937_RS02565 at 568.133 kb on - strand, within DDA3937_RS02565 at 568.155 kb on - strand, within DDA3937_RS02565 at 568.155 kb on - strand, within DDA3937_RS02565 at 568.172 kb on - strand, within DDA3937_RS02565 at 568.258 kb on + strand, within DDA3937_RS02565 at 568.296 kb on - strand, within DDA3937_RS02565 at 568.326 kb on - strand, within DDA3937_RS02565 at 568.345 kb on + strand, within DDA3937_RS02565 at 568.346 kb on - strand, within DDA3937_RS02565 at 568.352 kb on - strand, within DDA3937_RS02565 at 568.352 kb on - strand, within DDA3937_RS02565 at 568.352 kb on - strand, within DDA3937_RS02565
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 565,168 - DDA3937_RS02555 0.30 -1.7 565,168 - DDA3937_RS02555 0.30 -1.4 565,334 + DDA3937_RS02555 0.46 +1.1 565,336 + DDA3937_RS02555 0.46 +0.8 565,336 + DDA3937_RS02555 0.46 -0.4 565,336 + DDA3937_RS02555 0.46 +0.2 565,336 + DDA3937_RS02555 0.46 +0.7 565,336 + DDA3937_RS02555 0.46 -3.0 565,336 + DDA3937_RS02555 0.46 -0.4 565,336 + DDA3937_RS02555 0.46 -1.7 565,336 + +2.1 565,336 + DDA3937_RS02555 0.46 +1.8 565,336 + DDA3937_RS02555 0.46 -3.0 565,336 + DDA3937_RS02555 0.46 -1.5 565,336 + DDA3937_RS02555 0.46 +1.1 565,337 - DDA3937_RS02555 0.46 +0.4 565,337 - DDA3937_RS02555 0.46 -0.7 565,337 - DDA3937_RS02555 0.46 -0.2 565,337 - DDA3937_RS02555 0.46 -2.1 565,337 - DDA3937_RS02555 0.46 -1.6 565,337 - DDA3937_RS02555 0.46 -0.5 565,337 - DDA3937_RS02555 0.46 +0.5 565,337 - DDA3937_RS02555 0.46 -0.7 565,455 - DDA3937_RS02555 0.58 +0.3 565,710 - DDA3937_RS02555 0.83 +0.8 565,710 - DDA3937_RS02555 0.83 -0.9 565,711 + DDA3937_RS02555 0.83 +0.4 565,711 + DDA3937_RS02555 0.83 -1.9 565,711 + DDA3937_RS02555 0.83 -1.5 565,712 - DDA3937_RS02555 0.83 +1.1 565,881 - -2.0 565,933 + +0.1 565,933 + -0.3 565,934 - -0.3 566,129 - -0.5 566,175 - -1.4 566,201 - -2.3 566,248 - -2.5 566,259 + +0.1 566,260 - -0.4 566,260 - -3.5 566,260 - -0.5 566,352 + DDA3937_RS02560 0.15 -0.7 566,353 - DDA3937_RS02560 0.15 -2.0 566,404 + DDA3937_RS02560 0.20 +0.8 566,404 + DDA3937_RS02560 0.20 -0.7 566,405 - DDA3937_RS02560 0.20 +1.6 566,434 + DDA3937_RS02560 0.22 +1.1 566,434 + DDA3937_RS02560 0.22 +0.2 566,434 + DDA3937_RS02560 0.22 +0.1 566,434 + DDA3937_RS02560 0.22 -0.2 566,434 + DDA3937_RS02560 0.22 +1.1 566,434 + DDA3937_RS02560 0.22 +1.0 566,434 + DDA3937_RS02560 0.22 +2.3 566,434 + DDA3937_RS02560 0.22 -0.7 566,435 - DDA3937_RS02560 0.22 -0.5 566,435 - DDA3937_RS02560 0.22 -0.6 566,460 + DDA3937_RS02560 0.24 -1.0 566,461 - DDA3937_RS02560 0.24 -2.8 566,501 - DDA3937_RS02560 0.28 +0.9 566,501 - DDA3937_RS02560 0.28 +0.2 566,607 - DDA3937_RS02560 0.37 -0.8 566,627 + DDA3937_RS02560 0.38 +2.1 566,659 + DDA3937_RS02560 0.41 -0.7 566,659 + DDA3937_RS02560 0.41 +1.1 566,659 + DDA3937_RS02560 0.41 +1.3 566,659 + DDA3937_RS02560 0.41 -0.5 566,660 - DDA3937_RS02560 0.41 -1.9 566,660 - DDA3937_RS02560 0.41 -3.2 566,769 + DDA3937_RS02560 0.50 -1.6 566,963 + DDA3937_RS02560 0.66 -1.4 567,238 - DDA3937_RS02560 0.89 +1.1 567,322 - +0.5 567,356 - +0.3 567,433 - +0.6 567,460 - -1.1 567,460 - +1.1 567,460 - -0.1 567,621 + -0.9 567,709 - -2.0 567,772 + -2.0 567,772 + -0.5 567,776 - +0.5 567,783 + -0.3 567,852 + -2.7 567,853 - -1.1 567,870 + +0.1 567,937 + DDA3937_RS02565 0.12 -2.5 567,957 + DDA3937_RS02565 0.14 -1.5 567,958 - DDA3937_RS02565 0.14 -2.1 567,958 - DDA3937_RS02565 0.14 +0.4 567,959 + DDA3937_RS02565 0.14 +1.1 567,960 - DDA3937_RS02565 0.14 -0.5 567,960 - DDA3937_RS02565 0.14 -1.3 568,021 - DDA3937_RS02565 0.18 -1.5 568,083 + DDA3937_RS02565 0.22 -1.7 568,102 + DDA3937_RS02565 0.24 -0.3 568,103 - DDA3937_RS02565 0.24 -1.6 568,103 - DDA3937_RS02565 0.24 -0.5 568,124 + DDA3937_RS02565 0.25 -1.1 568,131 - DDA3937_RS02565 0.26 -0.7 568,133 - DDA3937_RS02565 0.26 -0.2 568,155 - DDA3937_RS02565 0.28 -0.8 568,155 - DDA3937_RS02565 0.28 -0.5 568,172 - DDA3937_RS02565 0.29 +0.6 568,258 + DDA3937_RS02565 0.35 -1.9 568,296 - DDA3937_RS02565 0.38 -1.2 568,326 - DDA3937_RS02565 0.40 -0.1 568,345 + DDA3937_RS02565 0.41 -0.8 568,346 - DDA3937_RS02565 0.41 -1.7 568,352 - DDA3937_RS02565 0.42 -2.1 568,352 - DDA3937_RS02565 0.42 -2.1 568,352 - DDA3937_RS02565 0.42 -0.7
Or see this region's nucleotide sequence