Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02430 and DDA3937_RS02435 are separated by 14 nucleotides DDA3937_RS02435 and DDA3937_RS02440 are separated by 150 nucleotides DDA3937_RS02440 and DDA3937_RS02445 are separated by 430 nucleotides
DDA3937_RS02430: DDA3937_RS02430 - YtjB family periplasmic protein, at 538,220 to 538,900
_RS02430
DDA3937_RS02435: DDA3937_RS02435 - trans-aconitate 2-methyltransferase, at 538,915 to 539,691
_RS02435
DDA3937_RS02440: DDA3937_RS02440 - hypothetical protein, at 539,842 to 540,714
_RS02440
DDA3937_RS02445: DDA3937_RS02445 - peptide chain release factor 3, at 541,145 to 542,734
_RS02445
Position (kb) 539
540
541 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 539.013 kb on - strand, within DDA3937_RS02435 at 539.123 kb on + strand, within DDA3937_RS02435 at 539.123 kb on + strand, within DDA3937_RS02435 at 539.123 kb on + strand, within DDA3937_RS02435 at 539.123 kb on + strand, within DDA3937_RS02435 at 539.124 kb on - strand, within DDA3937_RS02435 at 539.124 kb on - strand, within DDA3937_RS02435 at 539.124 kb on - strand, within DDA3937_RS02435 at 539.126 kb on + strand, within DDA3937_RS02435 at 539.126 kb on + strand, within DDA3937_RS02435 at 539.126 kb on + strand, within DDA3937_RS02435 at 539.126 kb on + strand, within DDA3937_RS02435 at 539.126 kb on + strand, within DDA3937_RS02435 at 539.126 kb on + strand, within DDA3937_RS02435 at 539.126 kb on + strand, within DDA3937_RS02435 at 539.126 kb on + strand, within DDA3937_RS02435 at 539.126 kb on + strand, within DDA3937_RS02435 at 539.127 kb on - strand, within DDA3937_RS02435 at 539.127 kb on - strand, within DDA3937_RS02435 at 539.127 kb on - strand, within DDA3937_RS02435 at 539.127 kb on - strand, within DDA3937_RS02435 at 539.127 kb on - strand, within DDA3937_RS02435 at 539.127 kb on - strand, within DDA3937_RS02435 at 539.127 kb on - strand, within DDA3937_RS02435 at 539.142 kb on + strand, within DDA3937_RS02435 at 539.177 kb on + strand, within DDA3937_RS02435 at 539.177 kb on + strand, within DDA3937_RS02435 at 539.177 kb on + strand, within DDA3937_RS02435 at 539.178 kb on - strand, within DDA3937_RS02435 at 539.178 kb on - strand, within DDA3937_RS02435 at 539.180 kb on + strand, within DDA3937_RS02435 at 539.180 kb on + strand, within DDA3937_RS02435 at 539.180 kb on + strand, within DDA3937_RS02435 at 539.180 kb on + strand, within DDA3937_RS02435 at 539.180 kb on + strand, within DDA3937_RS02435 at 539.180 kb on + strand, within DDA3937_RS02435 at 539.181 kb on - strand, within DDA3937_RS02435 at 539.181 kb on - strand, within DDA3937_RS02435 at 539.349 kb on + strand, within DDA3937_RS02435 at 539.350 kb on - strand, within DDA3937_RS02435 at 539.350 kb on - strand, within DDA3937_RS02435 at 539.350 kb on - strand, within DDA3937_RS02435 at 539.350 kb on - strand, within DDA3937_RS02435 at 539.399 kb on + strand, within DDA3937_RS02435 at 539.399 kb on + strand, within DDA3937_RS02435 at 539.400 kb on - strand, within DDA3937_RS02435 at 539.613 kb on + strand, within DDA3937_RS02435 at 539.644 kb on - strand at 539.666 kb on + strand at 539.666 kb on + strand at 539.691 kb on + strand at 539.691 kb on + strand at 539.691 kb on + strand at 539.692 kb on - strand at 539.712 kb on - strand at 539.732 kb on + strand at 539.741 kb on + strand at 539.741 kb on + strand at 539.741 kb on + strand at 539.742 kb on - strand at 539.936 kb on + strand, within DDA3937_RS02440 at 539.936 kb on + strand, within DDA3937_RS02440 at 539.937 kb on - strand, within DDA3937_RS02440 at 539.949 kb on + strand, within DDA3937_RS02440 at 539.949 kb on + strand, within DDA3937_RS02440 at 539.950 kb on - strand, within DDA3937_RS02440 at 540.035 kb on + strand, within DDA3937_RS02440 at 540.035 kb on + strand at 540.043 kb on + strand, within DDA3937_RS02440 at 540.083 kb on - strand, within DDA3937_RS02440 at 540.161 kb on + strand, within DDA3937_RS02440 at 540.162 kb on - strand, within DDA3937_RS02440 at 540.162 kb on - strand, within DDA3937_RS02440 at 540.162 kb on - strand, within DDA3937_RS02440 at 540.194 kb on + strand, within DDA3937_RS02440 at 540.194 kb on + strand, within DDA3937_RS02440 at 540.195 kb on - strand, within DDA3937_RS02440 at 540.195 kb on - strand, within DDA3937_RS02440 at 540.209 kb on + strand, within DDA3937_RS02440 at 540.209 kb on + strand, within DDA3937_RS02440 at 540.209 kb on + strand, within DDA3937_RS02440 at 540.209 kb on + strand, within DDA3937_RS02440 at 540.209 kb on + strand, within DDA3937_RS02440 at 540.209 kb on + strand, within DDA3937_RS02440 at 540.209 kb on + strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.270 kb on + strand, within DDA3937_RS02440 at 540.271 kb on - strand, within DDA3937_RS02440 at 540.296 kb on + strand, within DDA3937_RS02440 at 540.297 kb on - strand, within DDA3937_RS02440 at 540.364 kb on - strand, within DDA3937_RS02440 at 540.589 kb on + strand, within DDA3937_RS02440 at 540.590 kb on - strand, within DDA3937_RS02440 at 540.590 kb on - strand, within DDA3937_RS02440 at 540.590 kb on - strand, within DDA3937_RS02440 at 540.684 kb on + strand at 540.684 kb on + strand at 540.684 kb on + strand at 540.685 kb on - strand at 540.685 kb on - strand at 540.685 kb on - strand at 540.685 kb on - strand at 540.725 kb on + strand at 540.725 kb on + strand at 540.729 kb on + strand at 540.729 kb on + strand at 540.729 kb on + strand at 540.730 kb on - strand at 540.730 kb on - strand at 540.730 kb on - strand at 540.730 kb on - strand at 540.730 kb on - strand at 540.730 kb on - strand at 540.730 kb on - strand at 540.730 kb on - strand at 540.730 kb on - strand at 540.730 kb on - strand at 540.734 kb on + strand at 540.734 kb on + strand at 540.754 kb on - strand at 540.797 kb on + strand at 540.798 kb on - strand at 540.844 kb on - strand at 540.844 kb on - strand at 540.870 kb on + strand at 540.870 kb on + strand at 540.871 kb on - strand at 540.871 kb on - strand at 540.876 kb on - strand at 540.921 kb on + strand at 540.921 kb on + strand at 540.921 kb on + strand at 540.921 kb on + strand at 540.921 kb on + strand at 540.921 kb on + strand at 540.921 kb on + strand at 540.921 kb on + strand at 540.922 kb on - strand at 540.922 kb on - strand at 540.922 kb on - strand at 540.925 kb on + strand at 540.925 kb on + strand at 540.925 kb on + strand at 540.925 kb on + strand at 540.925 kb on + strand at 540.925 kb on + strand at 540.926 kb on - strand at 540.926 kb on - strand at 540.926 kb on - strand at 540.941 kb on + strand at 540.941 kb on + strand at 540.941 kb on + strand at 540.941 kb on + strand at 540.941 kb on + strand at 540.941 kb on + strand at 540.941 kb on + strand at 540.941 kb on + strand at 540.942 kb on - strand at 540.942 kb on - strand at 540.942 kb on - strand at 540.942 kb on - strand at 540.954 kb on + strand at 540.954 kb on + strand at 540.954 kb on + strand at 540.954 kb on + strand at 540.955 kb on - strand at 540.955 kb on - strand at 540.955 kb on - strand at 540.980 kb on + strand at 540.990 kb on + strand at 540.990 kb on + strand at 541.021 kb on + strand at 541.041 kb on + strand at 541.042 kb on - strand at 541.055 kb on + strand at 541.120 kb on + strand at 541.120 kb on + strand at 541.120 kb on + strand at 541.120 kb on + strand at 541.124 kb on + strand at 541.124 kb on + strand at 541.124 kb on + strand at 541.124 kb on + strand at 541.127 kb on + strand at 541.199 kb on - strand at 541.443 kb on - strand, within DDA3937_RS02445 at 541.700 kb on + strand, within DDA3937_RS02445
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 539,013 - DDA3937_RS02435 0.13 +0.5 539,123 + DDA3937_RS02435 0.27 -1.4 539,123 + DDA3937_RS02435 0.27 -0.7 539,123 + DDA3937_RS02435 0.27 -1.5 539,123 + DDA3937_RS02435 0.27 -1.0 539,124 - DDA3937_RS02435 0.27 -0.3 539,124 - DDA3937_RS02435 0.27 -1.1 539,124 - DDA3937_RS02435 0.27 +1.7 539,126 + DDA3937_RS02435 0.27 -0.1 539,126 + DDA3937_RS02435 0.27 -0.3 539,126 + DDA3937_RS02435 0.27 -0.2 539,126 + DDA3937_RS02435 0.27 -1.5 539,126 + DDA3937_RS02435 0.27 -1.7 539,126 + DDA3937_RS02435 0.27 -0.9 539,126 + DDA3937_RS02435 0.27 -0.7 539,126 + DDA3937_RS02435 0.27 -2.0 539,126 + DDA3937_RS02435 0.27 -0.5 539,127 - DDA3937_RS02435 0.27 -0.5 539,127 - DDA3937_RS02435 0.27 -0.9 539,127 - DDA3937_RS02435 0.27 -1.1 539,127 - DDA3937_RS02435 0.27 -1.3 539,127 - DDA3937_RS02435 0.27 +1.1 539,127 - DDA3937_RS02435 0.27 -0.1 539,127 - DDA3937_RS02435 0.27 +1.9 539,142 + DDA3937_RS02435 0.29 -2.0 539,177 + DDA3937_RS02435 0.34 -0.5 539,177 + DDA3937_RS02435 0.34 -1.7 539,177 + DDA3937_RS02435 0.34 -1.4 539,178 - DDA3937_RS02435 0.34 +2.1 539,178 - DDA3937_RS02435 0.34 -1.4 539,180 + DDA3937_RS02435 0.34 -0.5 539,180 + DDA3937_RS02435 0.34 -0.4 539,180 + DDA3937_RS02435 0.34 -0.5 539,180 + DDA3937_RS02435 0.34 -1.0 539,180 + DDA3937_RS02435 0.34 -1.7 539,180 + DDA3937_RS02435 0.34 -1.2 539,181 - DDA3937_RS02435 0.34 +0.4 539,181 - DDA3937_RS02435 0.34 +0.1 539,349 + DDA3937_RS02435 0.56 -1.2 539,350 - DDA3937_RS02435 0.56 -1.8 539,350 - DDA3937_RS02435 0.56 +1.3 539,350 - DDA3937_RS02435 0.56 -1.4 539,350 - DDA3937_RS02435 0.56 -1.9 539,399 + DDA3937_RS02435 0.62 +0.3 539,399 + DDA3937_RS02435 0.62 +0.2 539,400 - DDA3937_RS02435 0.62 -0.7 539,613 + DDA3937_RS02435 0.90 -1.1 539,644 - +0.1 539,666 + +0.1 539,666 + +1.5 539,691 + -1.2 539,691 + +1.2 539,691 + +0.2 539,692 - +0.0 539,712 - -0.7 539,732 + -0.5 539,741 + -1.1 539,741 + -2.7 539,741 + -1.4 539,742 - +0.1 539,936 + DDA3937_RS02440 0.11 -2.0 539,936 + DDA3937_RS02440 0.11 +0.2 539,937 - DDA3937_RS02440 0.11 +0.5 539,949 + DDA3937_RS02440 0.12 -2.3 539,949 + DDA3937_RS02440 0.12 +0.7 539,950 - DDA3937_RS02440 0.12 +0.8 540,035 + DDA3937_RS02440 0.22 -1.7 540,035 + +4.1 540,043 + DDA3937_RS02440 0.23 -2.2 540,083 - DDA3937_RS02440 0.28 -2.1 540,161 + DDA3937_RS02440 0.37 +0.2 540,162 - DDA3937_RS02440 0.37 +0.8 540,162 - DDA3937_RS02440 0.37 -0.1 540,162 - DDA3937_RS02440 0.37 +0.5 540,194 + DDA3937_RS02440 0.40 -0.9 540,194 + DDA3937_RS02440 0.40 -1.1 540,195 - DDA3937_RS02440 0.40 +0.8 540,195 - DDA3937_RS02440 0.40 +1.2 540,209 + DDA3937_RS02440 0.42 -1.3 540,209 + DDA3937_RS02440 0.42 -0.9 540,209 + DDA3937_RS02440 0.42 -1.1 540,209 + DDA3937_RS02440 0.42 -2.1 540,209 + DDA3937_RS02440 0.42 +2.5 540,209 + DDA3937_RS02440 0.42 -0.2 540,209 + DDA3937_RS02440 0.42 -3.4 540,210 - DDA3937_RS02440 0.42 -1.1 540,210 - DDA3937_RS02440 0.42 -0.1 540,210 - DDA3937_RS02440 0.42 +0.5 540,210 - DDA3937_RS02440 0.42 -0.2 540,210 - DDA3937_RS02440 0.42 -1.2 540,210 - DDA3937_RS02440 0.42 +0.6 540,210 - DDA3937_RS02440 0.42 +1.1 540,210 - DDA3937_RS02440 0.42 -2.0 540,210 - DDA3937_RS02440 0.42 -3.1 540,270 + DDA3937_RS02440 0.49 +0.9 540,271 - DDA3937_RS02440 0.49 -1.4 540,296 + DDA3937_RS02440 0.52 +0.7 540,297 - DDA3937_RS02440 0.52 -1.6 540,364 - DDA3937_RS02440 0.60 +0.2 540,589 + DDA3937_RS02440 0.86 +1.6 540,590 - DDA3937_RS02440 0.86 -2.8 540,590 - DDA3937_RS02440 0.86 -0.6 540,590 - DDA3937_RS02440 0.86 -0.2 540,684 + -1.6 540,684 + -0.5 540,684 + -1.0 540,685 - -0.7 540,685 - -1.6 540,685 - -2.4 540,685 - -0.9 540,725 + -1.9 540,725 + +1.1 540,729 + -2.4 540,729 + -0.6 540,729 + -0.6 540,730 - -1.4 540,730 - -0.5 540,730 - -0.8 540,730 - -0.5 540,730 - -2.4 540,730 - -0.0 540,730 - +0.7 540,730 - -0.5 540,730 - -0.7 540,730 - -1.4 540,734 + -0.2 540,734 + -3.3 540,754 - -1.4 540,797 + -1.9 540,798 - +0.1 540,844 - -1.6 540,844 - +1.2 540,870 + +0.7 540,870 + +0.4 540,871 - -2.4 540,871 - -1.1 540,876 - -0.7 540,921 + -0.4 540,921 + -2.2 540,921 + -2.0 540,921 + -0.9 540,921 + -0.0 540,921 + -1.4 540,921 + -2.2 540,921 + -2.4 540,922 - +0.1 540,922 - +0.2 540,922 - -0.9 540,925 + -0.5 540,925 + -2.0 540,925 + -1.7 540,925 + -1.8 540,925 + -0.6 540,925 + +1.1 540,926 - -0.4 540,926 - -1.3 540,926 - -0.2 540,941 + +0.5 540,941 + -0.8 540,941 + +0.2 540,941 + -0.2 540,941 + -0.6 540,941 + -1.3 540,941 + -1.5 540,941 + -0.5 540,942 - +1.1 540,942 - +1.5 540,942 - +0.2 540,942 - -0.9 540,954 + +1.2 540,954 + +2.8 540,954 + -2.2 540,954 + -2.1 540,955 - +1.3 540,955 - -0.6 540,955 - -0.0 540,980 + -2.5 540,990 + -0.4 540,990 + +2.1 541,021 + +0.5 541,041 + +2.9 541,042 - -0.5 541,055 + -2.4 541,120 + +1.1 541,120 + -1.3 541,120 + -1.4 541,120 + +0.1 541,124 + -2.1 541,124 + -0.9 541,124 + +0.5 541,124 + +2.1 541,127 + -0.2 541,199 - +2.5 541,443 - DDA3937_RS02445 0.19 -0.7 541,700 + DDA3937_RS02445 0.35 +0.6
Or see this region's nucleotide sequence