Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02365 and DDA3937_RS02370 are separated by 190 nucleotides DDA3937_RS02370 and DDA3937_RS02375 are separated by 926 nucleotides
DDA3937_RS02365: DDA3937_RS02365 - ABC transporter substrate-binding protein, at 523,144 to 524,772
_RS02365
DDA3937_RS02370: DDA3937_RS02370 - DUF1440 domain-containing protein, at 524,963 to 525,505
_RS02370
DDA3937_RS02375: DDA3937_RS02375 - IS110-like element ISEch4 family transposase, at 526,432 to 527,436
_RS02375
Position (kb) 524
525
526 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 524.055 kb on + strand, within DDA3937_RS02365 at 524.063 kb on + strand, within DDA3937_RS02365 at 524.087 kb on + strand, within DDA3937_RS02365 at 524.088 kb on - strand, within DDA3937_RS02365 at 524.088 kb on - strand, within DDA3937_RS02365 at 524.106 kb on - strand, within DDA3937_RS02365 at 524.144 kb on - strand, within DDA3937_RS02365 at 524.160 kb on + strand, within DDA3937_RS02365 at 524.161 kb on - strand, within DDA3937_RS02365 at 524.214 kb on - strand, within DDA3937_RS02365 at 524.238 kb on - strand at 524.257 kb on + strand, within DDA3937_RS02365 at 524.280 kb on + strand, within DDA3937_RS02365 at 524.280 kb on + strand, within DDA3937_RS02365 at 524.280 kb on + strand, within DDA3937_RS02365 at 524.280 kb on + strand, within DDA3937_RS02365 at 524.281 kb on - strand, within DDA3937_RS02365 at 524.281 kb on - strand, within DDA3937_RS02365 at 524.281 kb on - strand, within DDA3937_RS02365 at 524.282 kb on + strand, within DDA3937_RS02365 at 524.282 kb on + strand, within DDA3937_RS02365 at 524.283 kb on - strand, within DDA3937_RS02365 at 524.283 kb on - strand, within DDA3937_RS02365 at 524.351 kb on + strand, within DDA3937_RS02365 at 524.379 kb on + strand, within DDA3937_RS02365 at 524.379 kb on + strand, within DDA3937_RS02365 at 524.380 kb on - strand, within DDA3937_RS02365 at 524.393 kb on + strand, within DDA3937_RS02365 at 524.393 kb on + strand, within DDA3937_RS02365 at 524.393 kb on + strand, within DDA3937_RS02365 at 524.394 kb on - strand, within DDA3937_RS02365 at 524.394 kb on - strand, within DDA3937_RS02365 at 524.460 kb on + strand, within DDA3937_RS02365 at 524.460 kb on + strand, within DDA3937_RS02365 at 524.460 kb on + strand, within DDA3937_RS02365 at 524.460 kb on + strand, within DDA3937_RS02365 at 524.460 kb on + strand, within DDA3937_RS02365 at 524.460 kb on + strand, within DDA3937_RS02365 at 524.460 kb on + strand, within DDA3937_RS02365 at 524.461 kb on - strand, within DDA3937_RS02365 at 524.461 kb on - strand, within DDA3937_RS02365 at 524.461 kb on - strand, within DDA3937_RS02365 at 524.461 kb on - strand, within DDA3937_RS02365 at 524.463 kb on - strand, within DDA3937_RS02365 at 524.463 kb on - strand, within DDA3937_RS02365 at 524.582 kb on + strand, within DDA3937_RS02365 at 524.582 kb on + strand, within DDA3937_RS02365 at 524.583 kb on - strand, within DDA3937_RS02365 at 524.729 kb on - strand at 524.761 kb on + strand at 524.761 kb on + strand at 524.762 kb on - strand at 524.762 kb on - strand at 524.796 kb on + strand at 524.797 kb on - strand at 524.811 kb on + strand at 524.811 kb on + strand at 524.811 kb on + strand at 524.812 kb on - strand at 524.812 kb on - strand at 524.812 kb on - strand at 524.812 kb on - strand at 524.821 kb on + strand at 524.821 kb on + strand at 524.821 kb on + strand at 524.822 kb on - strand at 524.822 kb on - strand at 524.822 kb on - strand at 524.822 kb on - strand at 524.822 kb on - strand at 524.822 kb on - strand at 524.822 kb on - strand at 524.822 kb on - strand at 524.822 kb on - strand at 524.822 kb on - strand at 524.822 kb on - strand at 524.822 kb on - strand at 524.825 kb on + strand at 524.825 kb on + strand at 524.825 kb on + strand at 524.825 kb on + strand at 524.826 kb on - strand at 524.826 kb on - strand at 524.826 kb on - strand at 524.826 kb on - strand at 524.830 kb on + strand at 524.830 kb on + strand at 524.907 kb on + strand at 524.907 kb on + strand at 524.907 kb on + strand at 525.010 kb on + strand at 525.119 kb on + strand, within DDA3937_RS02370 at 525.119 kb on + strand, within DDA3937_RS02370 at 525.119 kb on + strand, within DDA3937_RS02370 at 525.119 kb on + strand, within DDA3937_RS02370 at 525.119 kb on + strand, within DDA3937_RS02370 at 525.224 kb on + strand, within DDA3937_RS02370 at 525.231 kb on + strand, within DDA3937_RS02370 at 525.232 kb on - strand, within DDA3937_RS02370 at 525.232 kb on - strand, within DDA3937_RS02370 at 525.236 kb on + strand, within DDA3937_RS02370 at 525.237 kb on - strand, within DDA3937_RS02370 at 525.237 kb on - strand, within DDA3937_RS02370 at 525.237 kb on - strand, within DDA3937_RS02370 at 525.309 kb on + strand, within DDA3937_RS02370 at 525.309 kb on + strand, within DDA3937_RS02370 at 525.310 kb on - strand, within DDA3937_RS02370 at 525.310 kb on - strand, within DDA3937_RS02370 at 525.310 kb on - strand, within DDA3937_RS02370 at 525.314 kb on + strand, within DDA3937_RS02370 at 525.314 kb on + strand, within DDA3937_RS02370 at 525.314 kb on + strand, within DDA3937_RS02370 at 525.314 kb on + strand, within DDA3937_RS02370 at 525.314 kb on + strand, within DDA3937_RS02370 at 525.314 kb on + strand, within DDA3937_RS02370 at 525.315 kb on - strand, within DDA3937_RS02370 at 525.315 kb on - strand, within DDA3937_RS02370 at 525.315 kb on - strand, within DDA3937_RS02370 at 525.315 kb on - strand, within DDA3937_RS02370 at 525.315 kb on - strand, within DDA3937_RS02370 at 525.315 kb on - strand, within DDA3937_RS02370 at 525.315 kb on - strand, within DDA3937_RS02370 at 525.315 kb on - strand, within DDA3937_RS02370 at 525.315 kb on - strand, within DDA3937_RS02370 at 525.316 kb on + strand, within DDA3937_RS02370 at 525.316 kb on + strand, within DDA3937_RS02370 at 525.316 kb on + strand, within DDA3937_RS02370 at 525.316 kb on + strand, within DDA3937_RS02370 at 525.317 kb on - strand, within DDA3937_RS02370 at 525.317 kb on - strand, within DDA3937_RS02370 at 525.317 kb on - strand, within DDA3937_RS02370 at 525.353 kb on + strand, within DDA3937_RS02370 at 525.354 kb on - strand, within DDA3937_RS02370 at 525.392 kb on - strand, within DDA3937_RS02370 at 525.508 kb on + strand at 525.509 kb on - strand at 525.574 kb on + strand at 525.575 kb on - strand at 525.643 kb on + strand at 525.644 kb on - strand at 525.656 kb on - strand at 525.656 kb on - strand at 525.656 kb on - strand at 525.776 kb on - strand at 525.824 kb on - strand at 525.829 kb on + strand at 525.858 kb on - strand at 525.858 kb on - strand at 525.883 kb on - strand at 525.967 kb on - strand at 525.993 kb on + strand at 526.042 kb on - strand at 526.042 kb on - strand at 526.071 kb on + strand at 526.071 kb on + strand at 526.071 kb on + strand at 526.091 kb on - strand at 526.099 kb on + strand at 526.099 kb on + strand at 526.100 kb on - strand at 526.100 kb on - strand at 526.100 kb on - strand at 526.131 kb on + strand at 526.131 kb on + strand at 526.132 kb on - strand at 526.324 kb on + strand at 526.365 kb on - strand at 526.365 kb on - strand at 526.365 kb on - strand at 526.365 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 524,055 + DDA3937_RS02365 0.56 -0.2 524,063 + DDA3937_RS02365 0.56 +0.1 524,087 + DDA3937_RS02365 0.58 -2.1 524,088 - DDA3937_RS02365 0.58 +0.1 524,088 - DDA3937_RS02365 0.58 -0.9 524,106 - DDA3937_RS02365 0.59 +0.3 524,144 - DDA3937_RS02365 0.61 -1.1 524,160 + DDA3937_RS02365 0.62 +1.1 524,161 - DDA3937_RS02365 0.62 -0.5 524,214 - DDA3937_RS02365 0.66 -0.2 524,238 - +0.1 524,257 + DDA3937_RS02365 0.68 -1.0 524,280 + DDA3937_RS02365 0.70 -0.2 524,280 + DDA3937_RS02365 0.70 -3.3 524,280 + DDA3937_RS02365 0.70 +0.1 524,280 + DDA3937_RS02365 0.70 -1.6 524,281 - DDA3937_RS02365 0.70 +2.1 524,281 - DDA3937_RS02365 0.70 -1.5 524,281 - DDA3937_RS02365 0.70 -1.8 524,282 + DDA3937_RS02365 0.70 -1.2 524,282 + DDA3937_RS02365 0.70 -0.7 524,283 - DDA3937_RS02365 0.70 +1.8 524,283 - DDA3937_RS02365 0.70 -0.6 524,351 + DDA3937_RS02365 0.74 -0.9 524,379 + DDA3937_RS02365 0.76 -1.1 524,379 + DDA3937_RS02365 0.76 -0.7 524,380 - DDA3937_RS02365 0.76 +1.1 524,393 + DDA3937_RS02365 0.77 -2.1 524,393 + DDA3937_RS02365 0.77 -1.3 524,393 + DDA3937_RS02365 0.77 +1.1 524,394 - DDA3937_RS02365 0.77 +2.9 524,394 - DDA3937_RS02365 0.77 -0.9 524,460 + DDA3937_RS02365 0.81 -0.5 524,460 + DDA3937_RS02365 0.81 -1.6 524,460 + DDA3937_RS02365 0.81 -1.2 524,460 + DDA3937_RS02365 0.81 +0.0 524,460 + DDA3937_RS02365 0.81 -0.4 524,460 + DDA3937_RS02365 0.81 -0.3 524,460 + DDA3937_RS02365 0.81 +0.5 524,461 - DDA3937_RS02365 0.81 -0.2 524,461 - DDA3937_RS02365 0.81 -1.2 524,461 - DDA3937_RS02365 0.81 -2.0 524,461 - DDA3937_RS02365 0.81 -1.2 524,463 - DDA3937_RS02365 0.81 -3.0 524,463 - DDA3937_RS02365 0.81 -0.1 524,582 + DDA3937_RS02365 0.88 -1.2 524,582 + DDA3937_RS02365 0.88 -2.2 524,583 - DDA3937_RS02365 0.88 -1.7 524,729 - -0.3 524,761 + +0.7 524,761 + +0.9 524,762 - -0.5 524,762 - -1.0 524,796 + +0.6 524,797 - +0.2 524,811 + +1.8 524,811 + -1.8 524,811 + -1.6 524,812 - -0.6 524,812 - +1.9 524,812 - +0.5 524,812 - -0.7 524,821 + +0.5 524,821 + -1.9 524,821 + -0.0 524,822 - +1.3 524,822 - -0.8 524,822 - -0.0 524,822 - +0.9 524,822 - +2.3 524,822 - -2.0 524,822 - +0.5 524,822 - -1.6 524,822 - -0.6 524,822 - -1.1 524,822 - -1.5 524,822 - -2.5 524,825 + -2.0 524,825 + -1.5 524,825 + -0.1 524,825 + +0.4 524,826 - +1.0 524,826 - -0.1 524,826 - +0.9 524,826 - -1.5 524,830 + +0.0 524,830 + +0.2 524,907 + +1.0 524,907 + +0.2 524,907 + -0.2 525,010 + +0.1 525,119 + DDA3937_RS02370 0.29 -2.4 525,119 + DDA3937_RS02370 0.29 +0.0 525,119 + DDA3937_RS02370 0.29 +0.2 525,119 + DDA3937_RS02370 0.29 +2.7 525,119 + DDA3937_RS02370 0.29 -0.5 525,224 + DDA3937_RS02370 0.48 -2.6 525,231 + DDA3937_RS02370 0.49 +0.2 525,232 - DDA3937_RS02370 0.50 -1.0 525,232 - DDA3937_RS02370 0.50 -0.1 525,236 + DDA3937_RS02370 0.50 +1.4 525,237 - DDA3937_RS02370 0.50 -0.1 525,237 - DDA3937_RS02370 0.50 -1.0 525,237 - DDA3937_RS02370 0.50 -1.4 525,309 + DDA3937_RS02370 0.64 -1.8 525,309 + DDA3937_RS02370 0.64 +0.4 525,310 - DDA3937_RS02370 0.64 -1.4 525,310 - DDA3937_RS02370 0.64 +0.8 525,310 - DDA3937_RS02370 0.64 +0.8 525,314 + DDA3937_RS02370 0.65 -1.1 525,314 + DDA3937_RS02370 0.65 -0.1 525,314 + DDA3937_RS02370 0.65 +0.5 525,314 + DDA3937_RS02370 0.65 -0.6 525,314 + DDA3937_RS02370 0.65 -3.1 525,314 + DDA3937_RS02370 0.65 +0.1 525,315 - DDA3937_RS02370 0.65 +0.4 525,315 - DDA3937_RS02370 0.65 -1.5 525,315 - DDA3937_RS02370 0.65 +0.0 525,315 - DDA3937_RS02370 0.65 -2.8 525,315 - DDA3937_RS02370 0.65 +1.7 525,315 - DDA3937_RS02370 0.65 +0.9 525,315 - DDA3937_RS02370 0.65 -0.3 525,315 - DDA3937_RS02370 0.65 -0.2 525,315 - DDA3937_RS02370 0.65 -1.9 525,316 + DDA3937_RS02370 0.65 -1.2 525,316 + DDA3937_RS02370 0.65 -1.2 525,316 + DDA3937_RS02370 0.65 -0.3 525,316 + DDA3937_RS02370 0.65 +0.6 525,317 - DDA3937_RS02370 0.65 -0.9 525,317 - DDA3937_RS02370 0.65 +0.5 525,317 - DDA3937_RS02370 0.65 +0.5 525,353 + DDA3937_RS02370 0.72 +0.5 525,354 - DDA3937_RS02370 0.72 -1.6 525,392 - DDA3937_RS02370 0.79 -1.7 525,508 + +0.7 525,509 - -2.4 525,574 + -1.8 525,575 - -1.1 525,643 + +0.5 525,644 - +2.5 525,656 - +0.9 525,656 - -2.4 525,656 - -1.2 525,776 - +1.4 525,824 - -3.0 525,829 + +1.1 525,858 - -1.7 525,858 - -0.7 525,883 - +0.1 525,967 - +2.1 525,993 + -1.9 526,042 - -0.7 526,042 - +1.2 526,071 + -0.4 526,071 + -1.0 526,071 + -0.2 526,091 - +1.0 526,099 + -2.5 526,099 + -0.3 526,100 - -0.7 526,100 - -1.0 526,100 - +0.8 526,131 + -1.1 526,131 + -0.7 526,132 - -2.3 526,324 + -1.8 526,365 - +0.7 526,365 - -1.9 526,365 - +0.1 526,365 - -2.2
Or see this region's nucleotide sequence