Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02320 and DDA3937_RS02325 are separated by 379 nucleotides DDA3937_RS02325 and DDA3937_RS02330 are separated by 37 nucleotides DDA3937_RS02330 and DDA3937_RS02335 are separated by 17 nucleotides
DDA3937_RS02320: DDA3937_RS02320 - rhamnulokinase, at 514,474 to 515,946
_RS02320
DDA3937_RS02325: DDA3937_RS02325 - HTH-type transcriptional activator RhaS, at 516,326 to 517,162
_RS02325
DDA3937_RS02330: DDA3937_RS02330 - HTH-type transcriptional activator RhaR, at 517,200 to 518,054
_RS02330
DDA3937_RS02335: DDA3937_RS02335 - hypothetical protein, at 518,072 to 518,368
_RS02335
Position (kb) 516
517
518 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 515.351 kb on + strand, within DDA3937_RS02320 at 515.351 kb on + strand, within DDA3937_RS02320 at 515.420 kb on + strand, within DDA3937_RS02320 at 515.421 kb on - strand, within DDA3937_RS02320 at 515.421 kb on - strand, within DDA3937_RS02320 at 515.421 kb on - strand, within DDA3937_RS02320 at 515.459 kb on + strand, within DDA3937_RS02320 at 515.459 kb on + strand, within DDA3937_RS02320 at 515.459 kb on + strand, within DDA3937_RS02320 at 515.460 kb on - strand, within DDA3937_RS02320 at 515.648 kb on + strand, within DDA3937_RS02320 at 515.648 kb on + strand, within DDA3937_RS02320 at 515.648 kb on + strand, within DDA3937_RS02320 at 515.649 kb on - strand, within DDA3937_RS02320 at 515.696 kb on - strand, within DDA3937_RS02320 at 515.696 kb on - strand, within DDA3937_RS02320 at 515.696 kb on - strand, within DDA3937_RS02320 at 515.696 kb on - strand, within DDA3937_RS02320 at 515.926 kb on + strand at 515.926 kb on + strand at 515.926 kb on + strand at 515.927 kb on - strand at 515.927 kb on - strand at 515.927 kb on - strand at 515.927 kb on - strand at 515.927 kb on - strand at 515.927 kb on - strand at 515.927 kb on - strand at 515.931 kb on - strand at 515.931 kb on - strand at 515.931 kb on - strand at 515.938 kb on - strand at 515.979 kb on + strand at 515.979 kb on + strand at 515.979 kb on + strand at 515.979 kb on + strand at 515.980 kb on - strand at 515.980 kb on - strand at 515.984 kb on - strand at 515.984 kb on - strand at 515.994 kb on + strand at 515.994 kb on + strand at 515.998 kb on + strand at 515.998 kb on + strand at 515.998 kb on + strand at 515.999 kb on - strand at 516.030 kb on - strand at 516.030 kb on - strand at 516.030 kb on - strand at 516.142 kb on + strand at 516.249 kb on - strand at 516.279 kb on + strand at 516.282 kb on + strand at 516.392 kb on - strand at 516.553 kb on - strand, within DDA3937_RS02325 at 516.553 kb on - strand, within DDA3937_RS02325 at 516.789 kb on + strand, within DDA3937_RS02325 at 516.790 kb on - strand, within DDA3937_RS02325 at 517.152 kb on - strand at 517.152 kb on - strand at 517.152 kb on - strand at 517.152 kb on - strand at 517.160 kb on + strand at 517.160 kb on + strand at 517.160 kb on + strand at 517.168 kb on + strand at 517.168 kb on + strand at 517.169 kb on - strand at 517.169 kb on - strand at 517.170 kb on + strand at 517.170 kb on + strand at 517.176 kb on + strand at 517.177 kb on - strand at 517.183 kb on + strand at 517.185 kb on + strand at 517.185 kb on + strand at 517.237 kb on - strand at 517.237 kb on - strand at 517.379 kb on + strand, within DDA3937_RS02330 at 517.380 kb on - strand, within DDA3937_RS02330 at 517.380 kb on - strand, within DDA3937_RS02330 at 517.382 kb on + strand, within DDA3937_RS02330 at 517.383 kb on - strand, within DDA3937_RS02330 at 517.383 kb on - strand, within DDA3937_RS02330 at 517.401 kb on + strand, within DDA3937_RS02330 at 517.401 kb on + strand, within DDA3937_RS02330 at 517.401 kb on + strand, within DDA3937_RS02330 at 517.401 kb on + strand, within DDA3937_RS02330 at 517.401 kb on + strand, within DDA3937_RS02330 at 517.401 kb on + strand, within DDA3937_RS02330 at 517.401 kb on + strand, within DDA3937_RS02330 at 517.402 kb on - strand, within DDA3937_RS02330 at 517.402 kb on - strand, within DDA3937_RS02330 at 517.402 kb on - strand, within DDA3937_RS02330 at 517.402 kb on - strand, within DDA3937_RS02330 at 517.402 kb on - strand, within DDA3937_RS02330 at 517.402 kb on - strand, within DDA3937_RS02330 at 517.402 kb on - strand, within DDA3937_RS02330 at 517.424 kb on + strand, within DDA3937_RS02330 at 517.425 kb on - strand, within DDA3937_RS02330 at 517.425 kb on - strand, within DDA3937_RS02330 at 517.425 kb on - strand, within DDA3937_RS02330 at 517.425 kb on - strand, within DDA3937_RS02330 at 517.428 kb on + strand at 517.428 kb on + strand, within DDA3937_RS02330 at 517.428 kb on + strand, within DDA3937_RS02330 at 517.428 kb on + strand, within DDA3937_RS02330 at 517.429 kb on - strand, within DDA3937_RS02330 at 517.429 kb on - strand, within DDA3937_RS02330 at 517.429 kb on - strand, within DDA3937_RS02330 at 517.429 kb on - strand, within DDA3937_RS02330 at 517.429 kb on - strand, within DDA3937_RS02330 at 517.429 kb on - strand, within DDA3937_RS02330 at 517.429 kb on - strand, within DDA3937_RS02330 at 517.429 kb on - strand, within DDA3937_RS02330 at 517.460 kb on + strand, within DDA3937_RS02330 at 517.460 kb on + strand, within DDA3937_RS02330 at 517.461 kb on - strand, within DDA3937_RS02330 at 517.461 kb on - strand, within DDA3937_RS02330 at 517.467 kb on + strand, within DDA3937_RS02330 at 517.467 kb on + strand, within DDA3937_RS02330 at 517.467 kb on + strand, within DDA3937_RS02330 at 517.467 kb on + strand, within DDA3937_RS02330 at 517.467 kb on + strand, within DDA3937_RS02330 at 517.467 kb on + strand, within DDA3937_RS02330 at 517.468 kb on - strand, within DDA3937_RS02330 at 517.468 kb on - strand, within DDA3937_RS02330 at 517.468 kb on - strand, within DDA3937_RS02330 at 517.468 kb on - strand, within DDA3937_RS02330 at 517.574 kb on + strand, within DDA3937_RS02330 at 517.574 kb on + strand, within DDA3937_RS02330 at 517.575 kb on - strand, within DDA3937_RS02330 at 517.575 kb on - strand, within DDA3937_RS02330 at 517.575 kb on - strand, within DDA3937_RS02330 at 517.801 kb on + strand, within DDA3937_RS02330 at 517.869 kb on + strand, within DDA3937_RS02330 at 517.869 kb on + strand, within DDA3937_RS02330 at 517.869 kb on + strand, within DDA3937_RS02330 at 517.870 kb on - strand, within DDA3937_RS02330 at 517.971 kb on + strand at 518.050 kb on + strand at 518.050 kb on + strand at 518.051 kb on - strand at 518.051 kb on - strand at 518.051 kb on - strand at 518.051 kb on - strand at 518.052 kb on + strand at 518.053 kb on - strand at 518.060 kb on + strand at 518.074 kb on - strand at 518.074 kb on - strand at 518.115 kb on + strand, within DDA3937_RS02335 at 518.116 kb on - strand, within DDA3937_RS02335 at 518.116 kb on - strand, within DDA3937_RS02335 at 518.129 kb on + strand, within DDA3937_RS02335 at 518.138 kb on + strand, within DDA3937_RS02335 at 518.138 kb on + strand, within DDA3937_RS02335 at 518.139 kb on - strand, within DDA3937_RS02335 at 518.142 kb on + strand, within DDA3937_RS02335 at 518.142 kb on + strand, within DDA3937_RS02335 at 518.142 kb on + strand, within DDA3937_RS02335 at 518.142 kb on + strand, within DDA3937_RS02335 at 518.143 kb on - strand, within DDA3937_RS02335 at 518.143 kb on - strand, within DDA3937_RS02335 at 518.162 kb on - strand, within DDA3937_RS02335
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 515,351 + DDA3937_RS02320 0.60 +0.3 515,351 + DDA3937_RS02320 0.60 -2.1 515,420 + DDA3937_RS02320 0.64 +0.0 515,421 - DDA3937_RS02320 0.64 -1.9 515,421 - DDA3937_RS02320 0.64 +0.6 515,421 - DDA3937_RS02320 0.64 +0.5 515,459 + DDA3937_RS02320 0.67 +0.8 515,459 + DDA3937_RS02320 0.67 -1.1 515,459 + DDA3937_RS02320 0.67 -1.0 515,460 - DDA3937_RS02320 0.67 +1.1 515,648 + DDA3937_RS02320 0.80 -1.8 515,648 + DDA3937_RS02320 0.80 -0.9 515,648 + DDA3937_RS02320 0.80 -0.9 515,649 - DDA3937_RS02320 0.80 +0.1 515,696 - DDA3937_RS02320 0.83 -0.7 515,696 - DDA3937_RS02320 0.83 +2.6 515,696 - DDA3937_RS02320 0.83 -0.9 515,696 - DDA3937_RS02320 0.83 +0.3 515,926 + -0.0 515,926 + +0.5 515,926 + +0.5 515,927 - +0.2 515,927 - -1.1 515,927 - -1.9 515,927 - -2.7 515,927 - -0.5 515,927 - -0.2 515,927 - -0.5 515,931 - +2.1 515,931 - -0.6 515,931 - -1.4 515,938 - -0.3 515,979 + +0.2 515,979 + +1.3 515,979 + +2.1 515,979 + +2.2 515,980 - +0.1 515,980 - -3.0 515,984 - +1.1 515,984 - +0.1 515,994 + -1.7 515,994 + +0.2 515,998 + -0.9 515,998 + +0.1 515,998 + -2.0 515,999 - +0.5 516,030 - -2.2 516,030 - +1.0 516,030 - -2.6 516,142 + -0.1 516,249 - -2.5 516,279 + -0.0 516,282 + -1.3 516,392 - +1.7 516,553 - DDA3937_RS02325 0.27 +0.5 516,553 - DDA3937_RS02325 0.27 -2.8 516,789 + DDA3937_RS02325 0.55 -1.1 516,790 - DDA3937_RS02325 0.55 +0.5 517,152 - -2.0 517,152 - +0.5 517,152 - +0.5 517,152 - -1.0 517,160 + -0.7 517,160 + -2.1 517,160 + -2.6 517,168 + -0.1 517,168 + -1.4 517,169 - -2.0 517,169 - -1.7 517,170 + -4.0 517,170 + -1.2 517,176 + -2.0 517,177 - -0.9 517,183 + -2.2 517,185 + +0.3 517,185 + -1.4 517,237 - -1.9 517,237 - -0.0 517,379 + DDA3937_RS02330 0.21 -0.5 517,380 - DDA3937_RS02330 0.21 -0.7 517,380 - DDA3937_RS02330 0.21 -0.2 517,382 + DDA3937_RS02330 0.21 -1.0 517,383 - DDA3937_RS02330 0.21 +0.8 517,383 - DDA3937_RS02330 0.21 -1.4 517,401 + DDA3937_RS02330 0.24 +0.2 517,401 + DDA3937_RS02330 0.24 +1.9 517,401 + DDA3937_RS02330 0.24 -0.2 517,401 + DDA3937_RS02330 0.24 +1.3 517,401 + DDA3937_RS02330 0.24 +1.7 517,401 + DDA3937_RS02330 0.24 +1.0 517,401 + DDA3937_RS02330 0.24 -2.6 517,402 - DDA3937_RS02330 0.24 -3.0 517,402 - DDA3937_RS02330 0.24 -0.7 517,402 - DDA3937_RS02330 0.24 -1.3 517,402 - DDA3937_RS02330 0.24 -0.7 517,402 - DDA3937_RS02330 0.24 -2.0 517,402 - DDA3937_RS02330 0.24 -0.2 517,402 - DDA3937_RS02330 0.24 +0.9 517,424 + DDA3937_RS02330 0.26 +1.7 517,425 - DDA3937_RS02330 0.26 -1.9 517,425 - DDA3937_RS02330 0.26 -0.9 517,425 - DDA3937_RS02330 0.26 +0.6 517,425 - DDA3937_RS02330 0.26 +0.3 517,428 + +0.5 517,428 + DDA3937_RS02330 0.27 +1.0 517,428 + DDA3937_RS02330 0.27 -0.7 517,428 + DDA3937_RS02330 0.27 -0.5 517,429 - DDA3937_RS02330 0.27 -0.9 517,429 - DDA3937_RS02330 0.27 -1.6 517,429 - DDA3937_RS02330 0.27 +0.9 517,429 - DDA3937_RS02330 0.27 -0.6 517,429 - DDA3937_RS02330 0.27 -1.7 517,429 - DDA3937_RS02330 0.27 -0.9 517,429 - DDA3937_RS02330 0.27 -1.9 517,429 - DDA3937_RS02330 0.27 -0.2 517,460 + DDA3937_RS02330 0.30 -0.2 517,460 + DDA3937_RS02330 0.30 -1.8 517,461 - DDA3937_RS02330 0.31 +1.5 517,461 - DDA3937_RS02330 0.31 -0.1 517,467 + DDA3937_RS02330 0.31 -0.2 517,467 + DDA3937_RS02330 0.31 -0.5 517,467 + DDA3937_RS02330 0.31 +0.5 517,467 + DDA3937_RS02330 0.31 -0.7 517,467 + DDA3937_RS02330 0.31 -1.5 517,467 + DDA3937_RS02330 0.31 -0.2 517,468 - DDA3937_RS02330 0.31 -0.3 517,468 - DDA3937_RS02330 0.31 -2.2 517,468 - DDA3937_RS02330 0.31 -0.4 517,468 - DDA3937_RS02330 0.31 -1.0 517,574 + DDA3937_RS02330 0.44 -0.8 517,574 + DDA3937_RS02330 0.44 -1.0 517,575 - DDA3937_RS02330 0.44 -1.6 517,575 - DDA3937_RS02330 0.44 -0.5 517,575 - DDA3937_RS02330 0.44 +1.0 517,801 + DDA3937_RS02330 0.70 -1.3 517,869 + DDA3937_RS02330 0.78 -0.5 517,869 + DDA3937_RS02330 0.78 -0.8 517,869 + DDA3937_RS02330 0.78 -0.7 517,870 - DDA3937_RS02330 0.78 -2.5 517,971 + -0.9 518,050 + -1.0 518,050 + -0.2 518,051 - -1.2 518,051 - -1.6 518,051 - -0.8 518,051 - -0.4 518,052 + -1.7 518,053 - -0.9 518,060 + -0.7 518,074 - -1.6 518,074 - -1.3 518,115 + DDA3937_RS02335 0.14 -0.2 518,116 - DDA3937_RS02335 0.15 -1.1 518,116 - DDA3937_RS02335 0.15 +0.9 518,129 + DDA3937_RS02335 0.19 +0.1 518,138 + DDA3937_RS02335 0.22 -3.4 518,138 + DDA3937_RS02335 0.22 -0.7 518,139 - DDA3937_RS02335 0.23 +0.5 518,142 + DDA3937_RS02335 0.24 +0.9 518,142 + DDA3937_RS02335 0.24 -1.1 518,142 + DDA3937_RS02335 0.24 -0.6 518,142 + DDA3937_RS02335 0.24 -1.2 518,143 - DDA3937_RS02335 0.24 +0.5 518,143 - DDA3937_RS02335 0.24 +0.3 518,162 - DDA3937_RS02335 0.30 -0.9
Or see this region's nucleotide sequence