Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02280 and DDA3937_RS02285 are separated by 383 nucleotides DDA3937_RS02285 and DDA3937_RS02290 are separated by 416 nucleotides
DDA3937_RS02280: DDA3937_RS02280 - chorismate mutase, at 505,344 to 505,874
_RS02280
DDA3937_RS02285: DDA3937_RS02285 - MFS transporter, at 506,258 to 507,490
_RS02285
DDA3937_RS02290: DDA3937_RS02290 - HD domain-containing protein, at 507,907 to 508,617
_RS02290
Position (kb) 506
507
508 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 505.297 kb on - strand at 505.345 kb on + strand at 505.345 kb on + strand at 505.345 kb on + strand at 505.345 kb on + strand at 505.346 kb on - strand at 505.353 kb on + strand at 505.600 kb on + strand, within DDA3937_RS02280 at 505.754 kb on - strand, within DDA3937_RS02280 at 505.774 kb on + strand, within DDA3937_RS02280 at 505.774 kb on + strand, within DDA3937_RS02280 at 505.774 kb on + strand, within DDA3937_RS02280 at 505.775 kb on - strand, within DDA3937_RS02280 at 505.869 kb on + strand at 505.874 kb on + strand at 505.874 kb on + strand at 505.874 kb on + strand at 505.874 kb on + strand at 505.874 kb on + strand at 505.874 kb on + strand at 505.874 kb on + strand at 505.874 kb on + strand at 505.874 kb on + strand at 505.875 kb on - strand at 505.875 kb on - strand at 505.875 kb on - strand at 505.875 kb on - strand at 505.875 kb on - strand at 505.875 kb on - strand at 505.875 kb on - strand at 505.897 kb on + strand at 505.897 kb on + strand at 505.897 kb on + strand at 505.898 kb on - strand at 505.972 kb on + strand at 505.972 kb on + strand at 505.972 kb on + strand at 505.972 kb on + strand at 505.972 kb on + strand at 505.972 kb on + strand at 505.972 kb on + strand at 505.973 kb on - strand at 505.973 kb on - strand at 505.973 kb on - strand at 505.973 kb on - strand at 505.973 kb on - strand at 505.973 kb on - strand at 505.973 kb on - strand at 505.973 kb on - strand at 505.973 kb on - strand at 505.973 kb on - strand at 506.033 kb on + strand at 506.131 kb on + strand at 506.131 kb on + strand at 506.132 kb on - strand at 506.205 kb on - strand at 506.216 kb on + strand at 506.216 kb on + strand at 506.217 kb on - strand at 506.253 kb on + strand at 506.253 kb on + strand at 506.253 kb on + strand at 506.253 kb on + strand at 506.253 kb on + strand at 506.254 kb on - strand at 506.254 kb on - strand at 506.254 kb on - strand at 506.254 kb on - strand at 506.254 kb on - strand at 506.254 kb on - strand at 506.365 kb on + strand at 506.488 kb on - strand, within DDA3937_RS02285 at 506.521 kb on + strand, within DDA3937_RS02285 at 506.521 kb on + strand at 506.522 kb on - strand, within DDA3937_RS02285 at 506.559 kb on + strand, within DDA3937_RS02285 at 506.559 kb on + strand, within DDA3937_RS02285 at 506.559 kb on + strand, within DDA3937_RS02285 at 506.560 kb on - strand, within DDA3937_RS02285 at 506.560 kb on - strand, within DDA3937_RS02285 at 506.722 kb on + strand, within DDA3937_RS02285 at 506.740 kb on - strand, within DDA3937_RS02285 at 506.809 kb on + strand, within DDA3937_RS02285 at 506.809 kb on + strand, within DDA3937_RS02285 at 506.810 kb on - strand, within DDA3937_RS02285 at 506.812 kb on + strand, within DDA3937_RS02285 at 506.812 kb on + strand, within DDA3937_RS02285 at 506.812 kb on + strand, within DDA3937_RS02285 at 506.813 kb on - strand, within DDA3937_RS02285 at 506.862 kb on - strand, within DDA3937_RS02285 at 506.915 kb on - strand, within DDA3937_RS02285 at 506.967 kb on + strand, within DDA3937_RS02285 at 506.971 kb on - strand, within DDA3937_RS02285 at 506.981 kb on + strand, within DDA3937_RS02285 at 506.982 kb on - strand, within DDA3937_RS02285 at 506.982 kb on - strand, within DDA3937_RS02285 at 506.985 kb on + strand, within DDA3937_RS02285 at 506.985 kb on + strand, within DDA3937_RS02285 at 506.986 kb on - strand, within DDA3937_RS02285 at 506.986 kb on - strand, within DDA3937_RS02285 at 506.986 kb on - strand, within DDA3937_RS02285 at 507.003 kb on + strand, within DDA3937_RS02285 at 507.003 kb on + strand, within DDA3937_RS02285 at 507.003 kb on + strand, within DDA3937_RS02285 at 507.003 kb on + strand, within DDA3937_RS02285 at 507.003 kb on + strand, within DDA3937_RS02285 at 507.004 kb on - strand, within DDA3937_RS02285 at 507.004 kb on - strand, within DDA3937_RS02285 at 507.024 kb on + strand at 507.030 kb on + strand, within DDA3937_RS02285 at 507.031 kb on - strand, within DDA3937_RS02285 at 507.031 kb on - strand, within DDA3937_RS02285 at 507.039 kb on - strand, within DDA3937_RS02285 at 507.039 kb on - strand, within DDA3937_RS02285 at 507.039 kb on - strand, within DDA3937_RS02285 at 507.369 kb on + strand at 507.369 kb on + strand at 507.385 kb on - strand at 507.385 kb on - strand at 507.385 kb on - strand at 507.385 kb on - strand at 507.385 kb on - strand at 507.495 kb on + strand at 507.496 kb on - strand at 507.496 kb on - strand at 507.496 kb on - strand at 507.500 kb on - strand at 507.512 kb on - strand at 507.512 kb on - strand at 507.512 kb on - strand at 507.515 kb on - strand at 507.524 kb on - strand at 507.570 kb on + strand at 507.570 kb on + strand at 507.571 kb on - strand at 507.629 kb on - strand at 507.633 kb on + strand at 507.635 kb on + strand at 507.704 kb on + strand at 507.704 kb on + strand at 507.705 kb on - strand at 507.707 kb on - strand at 507.718 kb on + strand at 507.720 kb on + strand at 507.724 kb on - strand at 507.806 kb on - strand at 507.856 kb on - strand at 507.882 kb on - strand at 507.882 kb on - strand at 507.914 kb on + strand at 507.914 kb on + strand at 507.914 kb on + strand at 507.915 kb on - strand at 507.915 kb on - strand at 507.915 kb on - strand at 507.943 kb on + strand at 507.943 kb on + strand at 507.943 kb on + strand at 507.944 kb on - strand at 507.947 kb on + strand at 507.948 kb on - strand at 508.249 kb on - strand, within DDA3937_RS02290 at 508.334 kb on - strand, within DDA3937_RS02290 at 508.334 kb on - strand, within DDA3937_RS02290 at 508.334 kb on - strand, within DDA3937_RS02290 at 508.415 kb on - strand, within DDA3937_RS02290 at 508.467 kb on + strand, within DDA3937_RS02290
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 505,297 - -1.6 505,345 + -0.8 505,345 + +0.8 505,345 + +2.5 505,345 + +2.1 505,346 - +1.0 505,353 + -0.9 505,600 + DDA3937_RS02280 0.48 -1.1 505,754 - DDA3937_RS02280 0.77 +1.1 505,774 + DDA3937_RS02280 0.81 -0.2 505,774 + DDA3937_RS02280 0.81 -1.6 505,774 + DDA3937_RS02280 0.81 -0.1 505,775 - DDA3937_RS02280 0.81 +0.5 505,869 + -1.4 505,874 + -0.7 505,874 + -0.7 505,874 + -0.4 505,874 + +0.1 505,874 + -0.9 505,874 + +0.3 505,874 + -0.7 505,874 + -1.8 505,874 + -2.3 505,875 - -0.3 505,875 - -0.8 505,875 - +0.1 505,875 - -0.5 505,875 - -3.0 505,875 - -0.5 505,875 - -0.2 505,897 + +1.1 505,897 + +0.4 505,897 + -0.3 505,898 - -1.4 505,972 + +0.3 505,972 + -0.9 505,972 + -1.5 505,972 + +2.1 505,972 + +1.5 505,972 + -3.9 505,972 + -0.0 505,973 - -0.6 505,973 - -0.5 505,973 - +0.3 505,973 - +0.3 505,973 - +0.5 505,973 - +1.0 505,973 - -1.1 505,973 - +0.6 505,973 - -1.4 505,973 - +1.1 506,033 + -0.5 506,131 + -1.3 506,131 + -0.6 506,132 - -0.5 506,205 - -1.9 506,216 + -1.7 506,216 + -0.7 506,217 - +0.2 506,253 + -0.4 506,253 + +1.2 506,253 + -0.6 506,253 + -1.7 506,253 + +0.5 506,254 - -1.9 506,254 - +2.8 506,254 - -1.4 506,254 - -0.5 506,254 - +0.6 506,254 - +0.2 506,365 + -1.1 506,488 - DDA3937_RS02285 0.19 -1.8 506,521 + DDA3937_RS02285 0.21 -1.9 506,521 + +0.1 506,522 - DDA3937_RS02285 0.21 -2.7 506,559 + DDA3937_RS02285 0.24 -0.6 506,559 + DDA3937_RS02285 0.24 -3.8 506,559 + DDA3937_RS02285 0.24 -0.5 506,560 - DDA3937_RS02285 0.24 +1.1 506,560 - DDA3937_RS02285 0.24 -1.5 506,722 + DDA3937_RS02285 0.38 -2.1 506,740 - DDA3937_RS02285 0.39 +0.1 506,809 + DDA3937_RS02285 0.45 -1.9 506,809 + DDA3937_RS02285 0.45 -1.4 506,810 - DDA3937_RS02285 0.45 +1.0 506,812 + DDA3937_RS02285 0.45 -1.5 506,812 + DDA3937_RS02285 0.45 -2.5 506,812 + DDA3937_RS02285 0.45 +0.1 506,813 - DDA3937_RS02285 0.45 +0.5 506,862 - DDA3937_RS02285 0.49 -0.0 506,915 - DDA3937_RS02285 0.53 +1.6 506,967 + DDA3937_RS02285 0.58 +0.6 506,971 - DDA3937_RS02285 0.58 -1.9 506,981 + DDA3937_RS02285 0.59 +1.1 506,982 - DDA3937_RS02285 0.59 +0.8 506,982 - DDA3937_RS02285 0.59 -0.4 506,985 + DDA3937_RS02285 0.59 -2.7 506,985 + DDA3937_RS02285 0.59 -0.6 506,986 - DDA3937_RS02285 0.59 -2.1 506,986 - DDA3937_RS02285 0.59 -0.5 506,986 - DDA3937_RS02285 0.59 -3.1 507,003 + DDA3937_RS02285 0.60 -0.8 507,003 + DDA3937_RS02285 0.60 -0.7 507,003 + DDA3937_RS02285 0.60 +0.3 507,003 + DDA3937_RS02285 0.60 -2.4 507,003 + DDA3937_RS02285 0.60 -0.7 507,004 - DDA3937_RS02285 0.61 -3.3 507,004 - DDA3937_RS02285 0.61 +0.3 507,024 + +0.1 507,030 + DDA3937_RS02285 0.63 +0.4 507,031 - DDA3937_RS02285 0.63 -0.7 507,031 - DDA3937_RS02285 0.63 -1.7 507,039 - DDA3937_RS02285 0.63 -0.2 507,039 - DDA3937_RS02285 0.63 -2.4 507,039 - DDA3937_RS02285 0.63 -0.5 507,369 + -0.7 507,369 + -2.4 507,385 - -2.7 507,385 - -0.2 507,385 - -1.0 507,385 - +0.3 507,385 - +1.4 507,495 + +1.6 507,496 - -0.6 507,496 - -1.1 507,496 - -0.9 507,500 - -1.2 507,512 - +0.5 507,512 - -0.9 507,512 - -0.2 507,515 - -0.8 507,524 - -1.9 507,570 + -1.1 507,570 + -1.4 507,571 - -1.3 507,629 - -0.2 507,633 + -0.5 507,635 + +0.6 507,704 + -1.2 507,704 + -1.5 507,705 - -0.4 507,707 - +1.9 507,718 + +1.7 507,720 + -0.2 507,724 - -0.4 507,806 - -1.1 507,856 - +0.7 507,882 - -0.7 507,882 - -0.0 507,914 + -2.9 507,914 + -2.4 507,914 + +0.8 507,915 - -0.2 507,915 - +0.1 507,915 - -3.2 507,943 + +1.0 507,943 + +0.8 507,943 + +0.6 507,944 - -0.9 507,947 + +0.4 507,948 - -0.9 508,249 - DDA3937_RS02290 0.48 +2.1 508,334 - DDA3937_RS02290 0.60 +0.1 508,334 - DDA3937_RS02290 0.60 +0.2 508,334 - DDA3937_RS02290 0.60 -1.4 508,415 - DDA3937_RS02290 0.71 -1.1 508,467 + DDA3937_RS02290 0.79 -0.3
Or see this region's nucleotide sequence