Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02165 and DDA3937_RS02170 are separated by 13 nucleotides DDA3937_RS02170 and DDA3937_RS02175 are separated by 92 nucleotides DDA3937_RS02175 and DDA3937_RS02180 are separated by 43 nucleotides DDA3937_RS02180 and DDA3937_RS02185 are separated by 50 nucleotides
DDA3937_RS02165: DDA3937_RS02165 - transketolase, at 480,985 to 481,905
_RS02165
DDA3937_RS02170: DDA3937_RS02170 - D-threitol dehydrogenase, at 481,919 to 482,722
_RS02170
DDA3937_RS02175: DDA3937_RS02175 - D-ribose ABC transporter substrate-binding protein, at 482,815 to 483,750
_RS02175
DDA3937_RS02180: DDA3937_RS02180 - DUF2291 domain-containing protein, at 483,794 to 484,426
_RS02180
DDA3937_RS02185: DDA3937_RS02185 - sugar ABC transporter ATP-binding protein, at 484,477 to 486,036
_RS02185
Position (kb) 482
483
484 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 481.869 kb on - strand at 481.937 kb on + strand at 481.938 kb on - strand at 481.938 kb on - strand at 482.178 kb on + strand, within DDA3937_RS02170 at 482.246 kb on + strand, within DDA3937_RS02170 at 482.246 kb on + strand, within DDA3937_RS02170 at 482.246 kb on + strand, within DDA3937_RS02170 at 482.353 kb on + strand, within DDA3937_RS02170 at 482.384 kb on - strand, within DDA3937_RS02170 at 482.435 kb on + strand, within DDA3937_RS02170 at 482.504 kb on - strand, within DDA3937_RS02170 at 482.504 kb on - strand, within DDA3937_RS02170 at 482.837 kb on + strand at 482.838 kb on - strand at 482.838 kb on - strand at 482.847 kb on + strand at 482.929 kb on + strand, within DDA3937_RS02175 at 482.929 kb on + strand, within DDA3937_RS02175 at 482.929 kb on + strand, within DDA3937_RS02175 at 482.929 kb on + strand, within DDA3937_RS02175 at 482.932 kb on + strand, within DDA3937_RS02175 at 482.933 kb on - strand, within DDA3937_RS02175 at 482.933 kb on - strand, within DDA3937_RS02175 at 482.933 kb on - strand, within DDA3937_RS02175 at 482.980 kb on + strand, within DDA3937_RS02175 at 482.980 kb on + strand, within DDA3937_RS02175 at 482.981 kb on - strand, within DDA3937_RS02175 at 482.981 kb on - strand, within DDA3937_RS02175 at 482.982 kb on + strand, within DDA3937_RS02175 at 482.982 kb on + strand, within DDA3937_RS02175 at 482.983 kb on - strand, within DDA3937_RS02175 at 483.059 kb on + strand, within DDA3937_RS02175 at 483.265 kb on + strand, within DDA3937_RS02175 at 483.265 kb on + strand, within DDA3937_RS02175 at 483.265 kb on + strand, within DDA3937_RS02175 at 483.265 kb on + strand, within DDA3937_RS02175 at 483.266 kb on - strand, within DDA3937_RS02175 at 483.266 kb on - strand, within DDA3937_RS02175 at 483.643 kb on + strand, within DDA3937_RS02175 at 483.643 kb on + strand, within DDA3937_RS02175 at 483.643 kb on + strand, within DDA3937_RS02175 at 483.643 kb on + strand, within DDA3937_RS02175 at 483.644 kb on - strand, within DDA3937_RS02175 at 483.644 kb on - strand, within DDA3937_RS02175 at 483.644 kb on - strand, within DDA3937_RS02175 at 483.644 kb on - strand, within DDA3937_RS02175 at 483.644 kb on - strand, within DDA3937_RS02175 at 483.703 kb on - strand at 483.703 kb on - strand at 483.703 kb on - strand at 483.793 kb on + strand at 483.793 kb on + strand at 483.793 kb on + strand at 483.793 kb on + strand at 483.793 kb on + strand at 483.794 kb on - strand at 483.794 kb on - strand at 483.794 kb on - strand at 483.907 kb on + strand, within DDA3937_RS02180 at 484.078 kb on - strand, within DDA3937_RS02180 at 484.167 kb on + strand, within DDA3937_RS02180 at 484.167 kb on + strand, within DDA3937_RS02180 at 484.167 kb on + strand, within DDA3937_RS02180 at 484.168 kb on - strand, within DDA3937_RS02180 at 484.168 kb on - strand, within DDA3937_RS02180 at 484.168 kb on - strand, within DDA3937_RS02180 at 484.168 kb on - strand, within DDA3937_RS02180 at 484.227 kb on - strand, within DDA3937_RS02180 at 484.227 kb on - strand, within DDA3937_RS02180 at 484.443 kb on - strand at 484.485 kb on + strand at 484.486 kb on - strand at 484.486 kb on - strand at 484.538 kb on + strand at 484.538 kb on + strand at 484.538 kb on + strand at 484.538 kb on + strand at 484.539 kb on - strand at 484.539 kb on - strand at 484.543 kb on - strand at 484.568 kb on + strand at 484.568 kb on + strand at 484.568 kb on + strand at 484.569 kb on - strand at 484.569 kb on - strand at 484.569 kb on - strand at 484.569 kb on - strand at 484.604 kb on - strand at 484.612 kb on + strand at 484.613 kb on - strand at 484.620 kb on + strand at 484.621 kb on - strand at 484.621 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 481,869 - +0.8 481,937 + +2.0 481,938 - -2.9 481,938 - -1.5 482,178 + DDA3937_RS02170 0.32 +0.1 482,246 + DDA3937_RS02170 0.41 -2.9 482,246 + DDA3937_RS02170 0.41 +1.1 482,246 + DDA3937_RS02170 0.41 +1.1 482,353 + DDA3937_RS02170 0.54 -2.7 482,384 - DDA3937_RS02170 0.58 -2.0 482,435 + DDA3937_RS02170 0.64 -2.2 482,504 - DDA3937_RS02170 0.73 +0.5 482,504 - DDA3937_RS02170 0.73 -0.5 482,837 + -1.1 482,838 - -2.5 482,838 - -0.9 482,847 + -1.5 482,929 + DDA3937_RS02175 0.12 -0.2 482,929 + DDA3937_RS02175 0.12 -1.9 482,929 + DDA3937_RS02175 0.12 +0.4 482,929 + DDA3937_RS02175 0.12 -0.8 482,932 + DDA3937_RS02175 0.12 -0.5 482,933 - DDA3937_RS02175 0.13 +1.5 482,933 - DDA3937_RS02175 0.13 -0.7 482,933 - DDA3937_RS02175 0.13 -1.2 482,980 + DDA3937_RS02175 0.18 -0.1 482,980 + DDA3937_RS02175 0.18 +2.3 482,981 - DDA3937_RS02175 0.18 +0.4 482,981 - DDA3937_RS02175 0.18 -2.0 482,982 + DDA3937_RS02175 0.18 -0.2 482,982 + DDA3937_RS02175 0.18 +2.1 482,983 - DDA3937_RS02175 0.18 +0.1 483,059 + DDA3937_RS02175 0.26 +0.1 483,265 + DDA3937_RS02175 0.48 +1.3 483,265 + DDA3937_RS02175 0.48 -0.8 483,265 + DDA3937_RS02175 0.48 +0.8 483,265 + DDA3937_RS02175 0.48 -1.0 483,266 - DDA3937_RS02175 0.48 -0.5 483,266 - DDA3937_RS02175 0.48 -2.5 483,643 + DDA3937_RS02175 0.88 -1.4 483,643 + DDA3937_RS02175 0.88 +0.9 483,643 + DDA3937_RS02175 0.88 +1.0 483,643 + DDA3937_RS02175 0.88 +0.6 483,644 - DDA3937_RS02175 0.89 -0.7 483,644 - DDA3937_RS02175 0.89 +0.5 483,644 - DDA3937_RS02175 0.89 -2.8 483,644 - DDA3937_RS02175 0.89 +0.5 483,644 - DDA3937_RS02175 0.89 -2.5 483,703 - +0.4 483,703 - -1.1 483,703 - -1.9 483,793 + +0.3 483,793 + -2.1 483,793 + -1.2 483,793 + +0.3 483,793 + -0.1 483,794 - -1.2 483,794 - +0.7 483,794 - +1.1 483,907 + DDA3937_RS02180 0.18 -2.1 484,078 - DDA3937_RS02180 0.45 +1.9 484,167 + DDA3937_RS02180 0.59 -1.9 484,167 + DDA3937_RS02180 0.59 -1.1 484,167 + DDA3937_RS02180 0.59 -2.0 484,168 - DDA3937_RS02180 0.59 +0.9 484,168 - DDA3937_RS02180 0.59 +0.4 484,168 - DDA3937_RS02180 0.59 -0.4 484,168 - DDA3937_RS02180 0.59 -0.5 484,227 - DDA3937_RS02180 0.68 +1.1 484,227 - DDA3937_RS02180 0.68 -1.3 484,443 - +0.1 484,485 + -2.0 484,486 - -0.6 484,486 - -0.6 484,538 + -2.3 484,538 + -1.4 484,538 + +0.5 484,538 + -1.1 484,539 - -0.5 484,539 - +1.6 484,543 - -0.4 484,568 + -1.8 484,568 + +2.4 484,568 + +1.8 484,569 - -0.7 484,569 - -0.3 484,569 - -0.4 484,569 - +1.4 484,604 - +2.1 484,612 + +1.5 484,613 - -0.9 484,620 + +1.1 484,621 - +0.3 484,621 - -1.4
Or see this region's nucleotide sequence