Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01710 and DDA3937_RS01715 are separated by 59 nucleotides DDA3937_RS01715 and DDA3937_RS01720 are separated by 685 nucleotides
DDA3937_RS01710: DDA3937_RS01710 - penicillin-binding protein activator, at 377,694 to 379,745
_RS01710
DDA3937_RS01715: DDA3937_RS01715 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 379,805 to 380,674
_RS01715
DDA3937_RS01720: DDA3937_RS01720 - shikimate 5-dehydrogenase, at 381,360 to 382,169
_RS01720
Position (kb) 379
380
381 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 379.066 kb on - strand, within DDA3937_RS01710 at 379.142 kb on + strand, within DDA3937_RS01710 at 379.143 kb on - strand, within DDA3937_RS01710 at 379.143 kb on - strand, within DDA3937_RS01710 at 379.143 kb on - strand, within DDA3937_RS01710 at 379.143 kb on - strand, within DDA3937_RS01710 at 379.267 kb on + strand, within DDA3937_RS01710 at 379.267 kb on + strand, within DDA3937_RS01710 at 379.267 kb on + strand, within DDA3937_RS01710 at 379.268 kb on - strand, within DDA3937_RS01710 at 379.268 kb on - strand, within DDA3937_RS01710 at 379.268 kb on - strand, within DDA3937_RS01710 at 379.268 kb on - strand, within DDA3937_RS01710 at 379.268 kb on - strand, within DDA3937_RS01710 at 379.324 kb on + strand, within DDA3937_RS01710 at 379.324 kb on + strand, within DDA3937_RS01710 at 379.324 kb on + strand, within DDA3937_RS01710 at 379.325 kb on - strand, within DDA3937_RS01710 at 379.327 kb on + strand, within DDA3937_RS01710 at 379.327 kb on + strand, within DDA3937_RS01710 at 379.328 kb on - strand, within DDA3937_RS01710 at 379.328 kb on - strand, within DDA3937_RS01710 at 379.328 kb on - strand, within DDA3937_RS01710 at 379.379 kb on + strand, within DDA3937_RS01710 at 379.539 kb on + strand, within DDA3937_RS01710 at 379.540 kb on - strand at 379.540 kb on - strand at 379.540 kb on - strand at 379.540 kb on - strand at 379.559 kb on + strand at 379.559 kb on + strand at 379.559 kb on + strand at 379.560 kb on - strand at 379.592 kb on - strand at 379.594 kb on + strand at 379.595 kb on - strand at 379.623 kb on + strand at 379.623 kb on + strand at 379.623 kb on + strand at 379.623 kb on + strand at 379.623 kb on + strand at 379.624 kb on - strand at 379.722 kb on - strand at 379.745 kb on + strand at 379.745 kb on + strand at 379.745 kb on + strand at 379.745 kb on + strand at 379.745 kb on + strand at 379.746 kb on - strand at 379.746 kb on - strand at 379.746 kb on - strand at 379.746 kb on - strand at 379.746 kb on - strand at 379.750 kb on + strand at 379.750 kb on + strand at 379.751 kb on - strand at 379.751 kb on - strand at 379.779 kb on - strand at 379.781 kb on + strand at 379.847 kb on + strand at 379.847 kb on + strand at 379.847 kb on + strand at 379.848 kb on - strand at 379.848 kb on - strand at 379.924 kb on + strand, within DDA3937_RS01715 at 379.924 kb on + strand, within DDA3937_RS01715 at 379.925 kb on - strand, within DDA3937_RS01715 at 379.939 kb on + strand, within DDA3937_RS01715 at 379.939 kb on + strand, within DDA3937_RS01715 at 379.939 kb on + strand, within DDA3937_RS01715 at 379.956 kb on + strand, within DDA3937_RS01715 at 379.956 kb on + strand, within DDA3937_RS01715 at 379.957 kb on - strand at 379.963 kb on - strand, within DDA3937_RS01715 at 379.978 kb on + strand at 379.978 kb on + strand, within DDA3937_RS01715 at 379.978 kb on + strand, within DDA3937_RS01715 at 379.978 kb on + strand, within DDA3937_RS01715 at 379.979 kb on - strand, within DDA3937_RS01715 at 379.979 kb on - strand, within DDA3937_RS01715 at 380.225 kb on + strand, within DDA3937_RS01715 at 380.226 kb on - strand, within DDA3937_RS01715 at 380.226 kb on - strand, within DDA3937_RS01715 at 380.226 kb on - strand, within DDA3937_RS01715 at 380.261 kb on - strand, within DDA3937_RS01715 at 380.266 kb on + strand, within DDA3937_RS01715 at 380.267 kb on - strand, within DDA3937_RS01715 at 380.375 kb on + strand, within DDA3937_RS01715 at 380.375 kb on + strand, within DDA3937_RS01715 at 380.375 kb on + strand, within DDA3937_RS01715 at 380.421 kb on - strand at 380.421 kb on - strand, within DDA3937_RS01715 at 380.636 kb on + strand at 380.672 kb on + strand at 381.111 kb on + strand at 381.112 kb on - strand at 381.201 kb on - strand at 381.284 kb on + strand at 381.284 kb on + strand at 381.285 kb on - strand at 381.298 kb on + strand at 381.299 kb on - strand at 381.299 kb on - strand at 381.299 kb on - strand at 381.299 kb on - strand at 381.299 kb on - strand at 381.328 kb on + strand at 381.328 kb on + strand at 381.328 kb on + strand at 381.328 kb on + strand at 381.329 kb on - strand at 381.329 kb on - strand at 381.329 kb on - strand at 381.329 kb on - strand at 381.329 kb on - strand at 381.329 kb on - strand at 381.360 kb on - strand at 381.411 kb on - strand at 381.411 kb on - strand at 381.411 kb on - strand at 381.413 kb on + strand at 381.413 kb on + strand at 381.413 kb on + strand at 381.414 kb on - strand at 381.415 kb on + strand at 381.415 kb on + strand at 381.415 kb on + strand at 381.415 kb on + strand at 381.415 kb on + strand at 381.415 kb on + strand at 381.415 kb on + strand at 381.416 kb on - strand at 381.416 kb on - strand at 381.416 kb on - strand at 381.416 kb on - strand at 381.416 kb on - strand at 381.416 kb on - strand at 381.420 kb on - strand at 381.420 kb on - strand at 381.420 kb on - strand at 381.435 kb on + strand at 381.435 kb on + strand at 381.436 kb on - strand at 381.465 kb on - strand at 381.465 kb on - strand, within DDA3937_RS01720 at 381.466 kb on + strand, within DDA3937_RS01720 at 381.467 kb on - strand, within DDA3937_RS01720 at 381.467 kb on - strand, within DDA3937_RS01720 at 381.468 kb on + strand, within DDA3937_RS01720 at 381.468 kb on + strand, within DDA3937_RS01720 at 381.468 kb on + strand, within DDA3937_RS01720 at 381.468 kb on + strand, within DDA3937_RS01720 at 381.468 kb on + strand, within DDA3937_RS01720 at 381.468 kb on + strand, within DDA3937_RS01720 at 381.468 kb on + strand, within DDA3937_RS01720 at 381.468 kb on + strand, within DDA3937_RS01720 at 381.468 kb on + strand, within DDA3937_RS01720 at 381.469 kb on - strand, within DDA3937_RS01720 at 381.469 kb on - strand, within DDA3937_RS01720 at 381.469 kb on - strand, within DDA3937_RS01720 at 381.469 kb on - strand at 381.469 kb on - strand, within DDA3937_RS01720 at 381.469 kb on - strand, within DDA3937_RS01720 at 381.469 kb on - strand, within DDA3937_RS01720 at 381.469 kb on - strand, within DDA3937_RS01720 at 381.469 kb on - strand, within DDA3937_RS01720 at 381.470 kb on + strand, within DDA3937_RS01720 at 381.470 kb on + strand, within DDA3937_RS01720 at 381.471 kb on - strand, within DDA3937_RS01720 at 381.471 kb on - strand, within DDA3937_RS01720 at 381.471 kb on - strand, within DDA3937_RS01720 at 381.479 kb on + strand, within DDA3937_RS01720 at 381.483 kb on - strand, within DDA3937_RS01720 at 381.491 kb on + strand at 381.492 kb on - strand, within DDA3937_RS01720 at 381.506 kb on - strand, within DDA3937_RS01720 at 381.569 kb on + strand, within DDA3937_RS01720 at 381.584 kb on + strand, within DDA3937_RS01720 at 381.584 kb on + strand, within DDA3937_RS01720 at 381.621 kb on - strand at 381.623 kb on + strand, within DDA3937_RS01720 at 381.623 kb on + strand, within DDA3937_RS01720 at 381.623 kb on + strand, within DDA3937_RS01720 at 381.623 kb on + strand, within DDA3937_RS01720 at 381.624 kb on - strand, within DDA3937_RS01720 at 381.624 kb on - strand, within DDA3937_RS01720 at 381.624 kb on - strand, within DDA3937_RS01720 at 381.626 kb on + strand, within DDA3937_RS01720 at 381.626 kb on + strand, within DDA3937_RS01720 at 381.626 kb on + strand, within DDA3937_RS01720 at 381.626 kb on + strand, within DDA3937_RS01720 at 381.626 kb on + strand, within DDA3937_RS01720 at 381.626 kb on + strand, within DDA3937_RS01720 at 381.627 kb on - strand, within DDA3937_RS01720 at 381.657 kb on + strand, within DDA3937_RS01720 at 381.658 kb on - strand, within DDA3937_RS01720 at 381.658 kb on - strand, within DDA3937_RS01720 at 381.662 kb on + strand, within DDA3937_RS01720 at 381.669 kb on + strand, within DDA3937_RS01720 at 381.669 kb on + strand, within DDA3937_RS01720 at 381.671 kb on + strand, within DDA3937_RS01720 at 381.672 kb on - strand, within DDA3937_RS01720 at 381.672 kb on - strand, within DDA3937_RS01720
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 379,066 - DDA3937_RS01710 0.67 -0.7 379,142 + DDA3937_RS01710 0.71 +0.2 379,143 - DDA3937_RS01710 0.71 -0.9 379,143 - DDA3937_RS01710 0.71 -1.6 379,143 - DDA3937_RS01710 0.71 +1.6 379,143 - DDA3937_RS01710 0.71 +0.9 379,267 + DDA3937_RS01710 0.77 +0.2 379,267 + DDA3937_RS01710 0.77 +0.1 379,267 + DDA3937_RS01710 0.77 +1.3 379,268 - DDA3937_RS01710 0.77 -1.6 379,268 - DDA3937_RS01710 0.77 +1.0 379,268 - DDA3937_RS01710 0.77 +0.4 379,268 - DDA3937_RS01710 0.77 -1.3 379,268 - DDA3937_RS01710 0.77 -1.9 379,324 + DDA3937_RS01710 0.79 +0.6 379,324 + DDA3937_RS01710 0.79 +1.1 379,324 + DDA3937_RS01710 0.79 +0.2 379,325 - DDA3937_RS01710 0.79 -0.8 379,327 + DDA3937_RS01710 0.80 -0.6 379,327 + DDA3937_RS01710 0.80 +0.2 379,328 - DDA3937_RS01710 0.80 -1.2 379,328 - DDA3937_RS01710 0.80 -0.5 379,328 - DDA3937_RS01710 0.80 -0.3 379,379 + DDA3937_RS01710 0.82 +1.6 379,539 + DDA3937_RS01710 0.90 +0.2 379,540 - +1.1 379,540 - -1.2 379,540 - -3.0 379,540 - +0.5 379,559 + -1.5 379,559 + +1.4 379,559 + +0.4 379,560 - +0.3 379,592 - -0.6 379,594 + +1.8 379,595 - -0.1 379,623 + -0.6 379,623 + -0.3 379,623 + -0.1 379,623 + +0.5 379,623 + -0.3 379,624 - -1.9 379,722 - -0.5 379,745 + -0.1 379,745 + +0.1 379,745 + +0.6 379,745 + +0.4 379,745 + -1.4 379,746 - -1.0 379,746 - -0.9 379,746 - -1.0 379,746 - +0.1 379,746 - +1.5 379,750 + +0.2 379,750 + +1.4 379,751 - -0.8 379,751 - -1.5 379,779 - -1.5 379,781 + -1.1 379,847 + +0.1 379,847 + -0.4 379,847 + -1.1 379,848 - +1.5 379,848 - -0.9 379,924 + DDA3937_RS01715 0.14 +0.7 379,924 + DDA3937_RS01715 0.14 -0.8 379,925 - DDA3937_RS01715 0.14 +0.2 379,939 + DDA3937_RS01715 0.15 -2.4 379,939 + DDA3937_RS01715 0.15 -1.3 379,939 + DDA3937_RS01715 0.15 -0.5 379,956 + DDA3937_RS01715 0.17 -2.5 379,956 + DDA3937_RS01715 0.17 -1.8 379,957 - +1.1 379,963 - DDA3937_RS01715 0.18 -0.4 379,978 + +0.5 379,978 + DDA3937_RS01715 0.20 -0.1 379,978 + DDA3937_RS01715 0.20 -2.6 379,978 + DDA3937_RS01715 0.20 -1.4 379,979 - DDA3937_RS01715 0.20 -0.9 379,979 - DDA3937_RS01715 0.20 -2.6 380,225 + DDA3937_RS01715 0.48 -0.3 380,226 - DDA3937_RS01715 0.48 -0.9 380,226 - DDA3937_RS01715 0.48 -1.8 380,226 - DDA3937_RS01715 0.48 -0.5 380,261 - DDA3937_RS01715 0.52 -0.9 380,266 + DDA3937_RS01715 0.53 -2.3 380,267 - DDA3937_RS01715 0.53 -0.5 380,375 + DDA3937_RS01715 0.66 -0.8 380,375 + DDA3937_RS01715 0.66 -1.5 380,375 + DDA3937_RS01715 0.66 -1.3 380,421 - +0.5 380,421 - DDA3937_RS01715 0.71 -2.3 380,636 + +0.5 380,672 + -0.5 381,111 + +1.2 381,112 - -2.6 381,201 - +0.5 381,284 + -1.4 381,284 + -0.5 381,285 - -2.6 381,298 + +0.7 381,299 - -1.4 381,299 - -1.8 381,299 - -3.2 381,299 - -2.5 381,299 - +0.1 381,328 + -0.5 381,328 + -0.9 381,328 + -1.4 381,328 + +1.1 381,329 - -1.1 381,329 - -1.2 381,329 - -2.1 381,329 - +1.1 381,329 - -1.8 381,329 - +1.6 381,360 - +1.0 381,411 - -3.3 381,411 - -0.9 381,411 - +0.5 381,413 + -1.3 381,413 + -0.0 381,413 + -1.1 381,414 - -1.6 381,415 + -1.4 381,415 + -0.3 381,415 + -0.9 381,415 + -0.6 381,415 + -0.3 381,415 + -0.7 381,415 + -2.2 381,416 - -1.1 381,416 - -1.5 381,416 - -1.1 381,416 - +0.2 381,416 - -1.3 381,416 - -1.4 381,420 - +1.2 381,420 - -2.6 381,420 - -0.8 381,435 + -0.4 381,435 + +0.1 381,436 - -1.3 381,465 - +0.5 381,465 - DDA3937_RS01720 0.13 +0.1 381,466 + DDA3937_RS01720 0.13 +0.5 381,467 - DDA3937_RS01720 0.13 -1.1 381,467 - DDA3937_RS01720 0.13 -1.9 381,468 + DDA3937_RS01720 0.13 -0.9 381,468 + DDA3937_RS01720 0.13 -0.7 381,468 + DDA3937_RS01720 0.13 +0.4 381,468 + DDA3937_RS01720 0.13 -0.9 381,468 + DDA3937_RS01720 0.13 -1.1 381,468 + DDA3937_RS01720 0.13 -0.2 381,468 + DDA3937_RS01720 0.13 -1.8 381,468 + DDA3937_RS01720 0.13 -1.4 381,468 + DDA3937_RS01720 0.13 -2.9 381,469 - DDA3937_RS01720 0.13 -0.3 381,469 - DDA3937_RS01720 0.13 +0.1 381,469 - DDA3937_RS01720 0.13 -0.4 381,469 - +2.1 381,469 - DDA3937_RS01720 0.13 -1.5 381,469 - DDA3937_RS01720 0.13 -1.3 381,469 - DDA3937_RS01720 0.13 -2.3 381,469 - DDA3937_RS01720 0.13 -3.2 381,469 - DDA3937_RS01720 0.13 +0.1 381,470 + DDA3937_RS01720 0.14 -0.8 381,470 + DDA3937_RS01720 0.14 -0.9 381,471 - DDA3937_RS01720 0.14 +0.0 381,471 - DDA3937_RS01720 0.14 -0.4 381,471 - DDA3937_RS01720 0.14 +0.5 381,479 + DDA3937_RS01720 0.15 +0.9 381,483 - DDA3937_RS01720 0.15 -2.9 381,491 + +0.5 381,492 - DDA3937_RS01720 0.16 +1.2 381,506 - DDA3937_RS01720 0.18 -1.9 381,569 + DDA3937_RS01720 0.26 -1.9 381,584 + DDA3937_RS01720 0.28 +0.8 381,584 + DDA3937_RS01720 0.28 -0.3 381,621 - +3.4 381,623 + DDA3937_RS01720 0.32 -0.5 381,623 + DDA3937_RS01720 0.32 +1.5 381,623 + DDA3937_RS01720 0.32 -0.3 381,623 + DDA3937_RS01720 0.32 -0.6 381,624 - DDA3937_RS01720 0.33 -1.1 381,624 - DDA3937_RS01720 0.33 +2.6 381,624 - DDA3937_RS01720 0.33 -0.3 381,626 + DDA3937_RS01720 0.33 +1.1 381,626 + DDA3937_RS01720 0.33 +0.3 381,626 + DDA3937_RS01720 0.33 +1.7 381,626 + DDA3937_RS01720 0.33 -0.3 381,626 + DDA3937_RS01720 0.33 +0.5 381,626 + DDA3937_RS01720 0.33 -1.3 381,627 - DDA3937_RS01720 0.33 +1.7 381,657 + DDA3937_RS01720 0.37 +0.1 381,658 - DDA3937_RS01720 0.37 -1.9 381,658 - DDA3937_RS01720 0.37 -2.3 381,662 + DDA3937_RS01720 0.37 +0.1 381,669 + DDA3937_RS01720 0.38 +0.4 381,669 + DDA3937_RS01720 0.38 -0.3 381,671 + DDA3937_RS01720 0.38 +0.2 381,672 - DDA3937_RS01720 0.39 -1.3 381,672 - DDA3937_RS01720 0.39 +0.5
Or see this region's nucleotide sequence