Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01640 and DDA3937_RS01645 are separated by 230 nucleotides DDA3937_RS01645 and DDA3937_RS01650 are separated by 4 nucleotides DDA3937_RS01650 and DDA3937_RS01655 are separated by 132 nucleotides
DDA3937_RS01640: DDA3937_RS01640 - multidrug effflux MFS transporter, at 359,790 to 361,043
_RS01640
DDA3937_RS01645: DDA3937_RS01645 - stringent starvation protein A, at 361,274 to 361,915
_RS01645
DDA3937_RS01650: DDA3937_RS01650 - ClpXP protease specificity-enhancing factor, at 361,920 to 362,417
_RS01650
DDA3937_RS01655: DDA3937_RS01655 - GFA family protein, at 362,550 to 362,960
_RS01655
Position (kb) 361
362 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 360.349 kb on + strand, within DDA3937_RS01640 at 360.349 kb on + strand, within DDA3937_RS01640 at 360.435 kb on + strand, within DDA3937_RS01640 at 360.436 kb on - strand, within DDA3937_RS01640 at 360.436 kb on - strand, within DDA3937_RS01640 at 360.436 kb on - strand, within DDA3937_RS01640 at 360.436 kb on - strand, within DDA3937_RS01640 at 360.471 kb on + strand, within DDA3937_RS01640 at 360.471 kb on + strand, within DDA3937_RS01640 at 360.471 kb on + strand, within DDA3937_RS01640 at 360.472 kb on - strand, within DDA3937_RS01640 at 360.472 kb on - strand, within DDA3937_RS01640 at 360.472 kb on - strand, within DDA3937_RS01640 at 360.472 kb on - strand, within DDA3937_RS01640 at 360.472 kb on - strand, within DDA3937_RS01640 at 360.473 kb on + strand, within DDA3937_RS01640 at 360.473 kb on + strand, within DDA3937_RS01640 at 360.473 kb on + strand, within DDA3937_RS01640 at 360.473 kb on + strand, within DDA3937_RS01640 at 360.474 kb on - strand, within DDA3937_RS01640 at 360.474 kb on - strand, within DDA3937_RS01640 at 360.513 kb on + strand, within DDA3937_RS01640 at 360.513 kb on + strand, within DDA3937_RS01640 at 360.513 kb on + strand, within DDA3937_RS01640 at 360.514 kb on - strand, within DDA3937_RS01640 at 360.514 kb on - strand, within DDA3937_RS01640 at 360.514 kb on - strand, within DDA3937_RS01640 at 360.514 kb on - strand, within DDA3937_RS01640 at 360.514 kb on - strand, within DDA3937_RS01640 at 360.572 kb on + strand, within DDA3937_RS01640 at 360.573 kb on - strand, within DDA3937_RS01640 at 360.573 kb on - strand, within DDA3937_RS01640 at 360.689 kb on + strand, within DDA3937_RS01640 at 360.689 kb on + strand, within DDA3937_RS01640 at 360.689 kb on + strand, within DDA3937_RS01640 at 360.689 kb on + strand, within DDA3937_RS01640 at 360.689 kb on + strand, within DDA3937_RS01640 at 360.690 kb on - strand, within DDA3937_RS01640 at 360.690 kb on - strand, within DDA3937_RS01640 at 360.750 kb on + strand, within DDA3937_RS01640 at 360.825 kb on + strand, within DDA3937_RS01640 at 360.825 kb on + strand, within DDA3937_RS01640 at 360.826 kb on - strand, within DDA3937_RS01640 at 360.826 kb on - strand, within DDA3937_RS01640 at 360.876 kb on + strand, within DDA3937_RS01640 at 360.876 kb on + strand, within DDA3937_RS01640 at 360.876 kb on + strand, within DDA3937_RS01640 at 360.876 kb on + strand, within DDA3937_RS01640 at 360.877 kb on - strand, within DDA3937_RS01640 at 360.900 kb on + strand at 360.901 kb on - strand, within DDA3937_RS01640 at 360.916 kb on + strand, within DDA3937_RS01640 at 360.916 kb on + strand, within DDA3937_RS01640 at 360.917 kb on - strand, within DDA3937_RS01640 at 360.917 kb on - strand, within DDA3937_RS01640 at 360.952 kb on + strand at 360.952 kb on + strand at 360.952 kb on + strand at 360.952 kb on + strand at 360.953 kb on - strand at 360.953 kb on - strand at 360.953 kb on - strand at 360.976 kb on + strand at 360.976 kb on + strand at 360.976 kb on + strand at 360.977 kb on - strand at 360.977 kb on - strand at 360.984 kb on - strand at 360.984 kb on - strand at 360.984 kb on - strand at 360.998 kb on + strand at 361.052 kb on - strand at 361.052 kb on - strand at 361.084 kb on + strand at 361.113 kb on + strand at 361.113 kb on + strand at 361.113 kb on + strand at 361.131 kb on + strand at 361.131 kb on + strand at 361.131 kb on + strand at 361.132 kb on - strand at 361.481 kb on + strand, within DDA3937_RS01645 at 361.481 kb on + strand, within DDA3937_RS01645 at 361.481 kb on + strand, within DDA3937_RS01645 at 361.481 kb on + strand, within DDA3937_RS01645 at 361.481 kb on + strand, within DDA3937_RS01645 at 361.481 kb on + strand, within DDA3937_RS01645 at 361.482 kb on - strand, within DDA3937_RS01645 at 361.492 kb on + strand, within DDA3937_RS01645 at 361.505 kb on + strand, within DDA3937_RS01645 at 361.636 kb on + strand, within DDA3937_RS01645 at 361.637 kb on - strand, within DDA3937_RS01645 at 361.637 kb on - strand, within DDA3937_RS01645 at 361.751 kb on + strand, within DDA3937_RS01645 at 361.752 kb on - strand, within DDA3937_RS01645 at 361.829 kb on + strand, within DDA3937_RS01645 at 361.830 kb on - strand, within DDA3937_RS01645 at 361.831 kb on + strand, within DDA3937_RS01645 at 361.831 kb on + strand, within DDA3937_RS01645 at 361.832 kb on - strand, within DDA3937_RS01645 at 361.971 kb on + strand, within DDA3937_RS01650 at 361.971 kb on + strand, within DDA3937_RS01650 at 361.971 kb on + strand, within DDA3937_RS01650 at 362.081 kb on + strand, within DDA3937_RS01650 at 362.081 kb on + strand, within DDA3937_RS01650 at 362.081 kb on + strand, within DDA3937_RS01650 at 362.113 kb on + strand, within DDA3937_RS01650 at 362.113 kb on + strand, within DDA3937_RS01650 at 362.114 kb on - strand, within DDA3937_RS01650 at 362.114 kb on - strand, within DDA3937_RS01650 at 362.114 kb on - strand, within DDA3937_RS01650 at 362.114 kb on - strand, within DDA3937_RS01650 at 362.199 kb on + strand, within DDA3937_RS01650 at 362.199 kb on + strand, within DDA3937_RS01650 at 362.199 kb on + strand, within DDA3937_RS01650 at 362.199 kb on + strand, within DDA3937_RS01650 at 362.199 kb on + strand, within DDA3937_RS01650 at 362.415 kb on + strand at 362.443 kb on - strand at 362.487 kb on - strand at 362.576 kb on - strand at 362.576 kb on - strand at 362.587 kb on + strand at 362.612 kb on + strand, within DDA3937_RS01655 at 362.612 kb on + strand, within DDA3937_RS01655 at 362.612 kb on + strand, within DDA3937_RS01655 at 362.612 kb on + strand, within DDA3937_RS01655 at 362.612 kb on + strand, within DDA3937_RS01655 at 362.612 kb on + strand, within DDA3937_RS01655 at 362.612 kb on + strand, within DDA3937_RS01655 at 362.612 kb on + strand, within DDA3937_RS01655 at 362.612 kb on + strand, within DDA3937_RS01655 at 362.612 kb on + strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.625 kb on + strand, within DDA3937_RS01655 at 362.625 kb on + strand, within DDA3937_RS01655 at 362.625 kb on + strand, within DDA3937_RS01655 at 362.625 kb on + strand, within DDA3937_RS01655 at 362.625 kb on + strand, within DDA3937_RS01655 at 362.625 kb on + strand, within DDA3937_RS01655 at 362.625 kb on + strand, within DDA3937_RS01655 at 362.626 kb on - strand, within DDA3937_RS01655 at 362.626 kb on - strand, within DDA3937_RS01655 at 362.626 kb on - strand, within DDA3937_RS01655 at 362.626 kb on - strand, within DDA3937_RS01655 at 362.626 kb on - strand, within DDA3937_RS01655 at 362.626 kb on - strand, within DDA3937_RS01655 at 362.626 kb on - strand, within DDA3937_RS01655 at 362.626 kb on - strand, within DDA3937_RS01655 at 362.643 kb on - strand, within DDA3937_RS01655 at 362.643 kb on - strand, within DDA3937_RS01655 at 362.643 kb on - strand, within DDA3937_RS01655 at 362.643 kb on - strand, within DDA3937_RS01655 at 362.814 kb on + strand, within DDA3937_RS01655 at 362.814 kb on + strand, within DDA3937_RS01655 at 362.871 kb on + strand, within DDA3937_RS01655 at 362.871 kb on + strand, within DDA3937_RS01655 at 362.872 kb on - strand, within DDA3937_RS01655 at 362.872 kb on - strand, within DDA3937_RS01655 at 362.872 kb on - strand, within DDA3937_RS01655 at 362.872 kb on - strand, within DDA3937_RS01655 at 362.879 kb on + strand, within DDA3937_RS01655 at 362.882 kb on + strand, within DDA3937_RS01655 at 362.882 kb on + strand, within DDA3937_RS01655 at 362.883 kb on - strand, within DDA3937_RS01655 at 362.892 kb on + strand, within DDA3937_RS01655 at 362.892 kb on + strand, within DDA3937_RS01655 at 362.895 kb on + strand, within DDA3937_RS01655 at 362.896 kb on - strand, within DDA3937_RS01655 at 362.896 kb on - strand, within DDA3937_RS01655 at 362.905 kb on + strand, within DDA3937_RS01655 at 362.906 kb on - strand, within DDA3937_RS01655
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 360,349 + DDA3937_RS01640 0.45 +0.3 360,349 + DDA3937_RS01640 0.45 -0.5 360,435 + DDA3937_RS01640 0.51 +2.0 360,436 - DDA3937_RS01640 0.52 +0.5 360,436 - DDA3937_RS01640 0.52 -0.7 360,436 - DDA3937_RS01640 0.52 -0.9 360,436 - DDA3937_RS01640 0.52 +3.1 360,471 + DDA3937_RS01640 0.54 -1.0 360,471 + DDA3937_RS01640 0.54 +0.5 360,471 + DDA3937_RS01640 0.54 -1.8 360,472 - DDA3937_RS01640 0.54 +0.1 360,472 - DDA3937_RS01640 0.54 -2.8 360,472 - DDA3937_RS01640 0.54 -0.6 360,472 - DDA3937_RS01640 0.54 -1.1 360,472 - DDA3937_RS01640 0.54 -0.6 360,473 + DDA3937_RS01640 0.54 +0.1 360,473 + DDA3937_RS01640 0.54 -1.7 360,473 + DDA3937_RS01640 0.54 +1.4 360,473 + DDA3937_RS01640 0.54 +0.4 360,474 - DDA3937_RS01640 0.55 -2.7 360,474 - DDA3937_RS01640 0.55 -0.2 360,513 + DDA3937_RS01640 0.58 -0.3 360,513 + DDA3937_RS01640 0.58 -0.7 360,513 + DDA3937_RS01640 0.58 -0.6 360,514 - DDA3937_RS01640 0.58 +1.1 360,514 - DDA3937_RS01640 0.58 -2.4 360,514 - DDA3937_RS01640 0.58 -0.9 360,514 - DDA3937_RS01640 0.58 -0.3 360,514 - DDA3937_RS01640 0.58 -1.5 360,572 + DDA3937_RS01640 0.62 -1.8 360,573 - DDA3937_RS01640 0.62 -0.5 360,573 - DDA3937_RS01640 0.62 -0.3 360,689 + DDA3937_RS01640 0.72 -1.9 360,689 + DDA3937_RS01640 0.72 -1.6 360,689 + DDA3937_RS01640 0.72 -2.8 360,689 + DDA3937_RS01640 0.72 +1.5 360,689 + DDA3937_RS01640 0.72 +0.6 360,690 - DDA3937_RS01640 0.72 -3.0 360,690 - DDA3937_RS01640 0.72 -0.2 360,750 + DDA3937_RS01640 0.77 +0.8 360,825 + DDA3937_RS01640 0.83 +1.9 360,825 + DDA3937_RS01640 0.83 -0.1 360,826 - DDA3937_RS01640 0.83 +1.9 360,826 - DDA3937_RS01640 0.83 -2.5 360,876 + DDA3937_RS01640 0.87 +0.5 360,876 + DDA3937_RS01640 0.87 +0.1 360,876 + DDA3937_RS01640 0.87 +0.7 360,876 + DDA3937_RS01640 0.87 -1.1 360,877 - DDA3937_RS01640 0.87 -1.8 360,900 + -0.7 360,901 - DDA3937_RS01640 0.89 -0.5 360,916 + DDA3937_RS01640 0.90 -3.2 360,916 + DDA3937_RS01640 0.90 -1.3 360,917 - DDA3937_RS01640 0.90 +0.1 360,917 - DDA3937_RS01640 0.90 -1.7 360,952 + -0.3 360,952 + -1.7 360,952 + -0.9 360,952 + -1.1 360,953 - -0.1 360,953 - -1.9 360,953 - -1.5 360,976 + -3.1 360,976 + -0.4 360,976 + +1.1 360,977 - +0.5 360,977 - +1.5 360,984 - -1.5 360,984 - +0.3 360,984 - -0.5 360,998 + +0.2 361,052 - -1.7 361,052 - -0.9 361,084 + -0.6 361,113 + -1.9 361,113 + +0.7 361,113 + -0.5 361,131 + -1.9 361,131 + +0.6 361,131 + -2.2 361,132 - -1.6 361,481 + DDA3937_RS01645 0.32 -0.7 361,481 + DDA3937_RS01645 0.32 +1.7 361,481 + DDA3937_RS01645 0.32 -1.1 361,481 + DDA3937_RS01645 0.32 -0.4 361,481 + DDA3937_RS01645 0.32 -2.2 361,481 + DDA3937_RS01645 0.32 +0.1 361,482 - DDA3937_RS01645 0.32 +1.1 361,492 + DDA3937_RS01645 0.34 +1.1 361,505 + DDA3937_RS01645 0.36 -2.7 361,636 + DDA3937_RS01645 0.56 -0.5 361,637 - DDA3937_RS01645 0.57 -1.6 361,637 - DDA3937_RS01645 0.57 -1.4 361,751 + DDA3937_RS01645 0.74 -1.4 361,752 - DDA3937_RS01645 0.74 -1.4 361,829 + DDA3937_RS01645 0.86 +1.1 361,830 - DDA3937_RS01645 0.87 -3.2 361,831 + DDA3937_RS01645 0.87 -0.9 361,831 + DDA3937_RS01645 0.87 -1.3 361,832 - DDA3937_RS01645 0.87 -0.5 361,971 + DDA3937_RS01650 0.10 +0.0 361,971 + DDA3937_RS01650 0.10 -2.6 361,971 + DDA3937_RS01650 0.10 -2.1 362,081 + DDA3937_RS01650 0.32 +0.3 362,081 + DDA3937_RS01650 0.32 -0.7 362,081 + DDA3937_RS01650 0.32 -0.5 362,113 + DDA3937_RS01650 0.39 -1.1 362,113 + DDA3937_RS01650 0.39 -0.3 362,114 - DDA3937_RS01650 0.39 +0.1 362,114 - DDA3937_RS01650 0.39 -2.1 362,114 - DDA3937_RS01650 0.39 -0.2 362,114 - DDA3937_RS01650 0.39 -3.4 362,199 + DDA3937_RS01650 0.56 -1.4 362,199 + DDA3937_RS01650 0.56 -0.6 362,199 + DDA3937_RS01650 0.56 +0.9 362,199 + DDA3937_RS01650 0.56 -0.1 362,199 + DDA3937_RS01650 0.56 -1.7 362,415 + -0.7 362,443 - -1.0 362,487 - +0.7 362,576 - +0.5 362,576 - +0.5 362,587 + -1.1 362,612 + DDA3937_RS01655 0.15 +0.8 362,612 + DDA3937_RS01655 0.15 -1.4 362,612 + DDA3937_RS01655 0.15 +1.3 362,612 + DDA3937_RS01655 0.15 -2.5 362,612 + DDA3937_RS01655 0.15 -2.2 362,612 + DDA3937_RS01655 0.15 +0.8 362,612 + DDA3937_RS01655 0.15 -0.3 362,612 + DDA3937_RS01655 0.15 -1.5 362,612 + DDA3937_RS01655 0.15 -1.6 362,612 + DDA3937_RS01655 0.15 -3.1 362,613 - DDA3937_RS01655 0.15 -2.3 362,613 - DDA3937_RS01655 0.15 -2.5 362,613 - DDA3937_RS01655 0.15 +1.1 362,613 - DDA3937_RS01655 0.15 -1.4 362,613 - DDA3937_RS01655 0.15 -0.2 362,613 - DDA3937_RS01655 0.15 -1.5 362,613 - DDA3937_RS01655 0.15 -1.5 362,613 - DDA3937_RS01655 0.15 -0.9 362,613 - DDA3937_RS01655 0.15 -2.1 362,613 - DDA3937_RS01655 0.15 +2.3 362,613 - DDA3937_RS01655 0.15 -0.9 362,625 + DDA3937_RS01655 0.18 +2.9 362,625 + DDA3937_RS01655 0.18 +0.7 362,625 + DDA3937_RS01655 0.18 -0.7 362,625 + DDA3937_RS01655 0.18 +2.3 362,625 + DDA3937_RS01655 0.18 -0.4 362,625 + DDA3937_RS01655 0.18 +3.3 362,625 + DDA3937_RS01655 0.18 +0.3 362,626 - DDA3937_RS01655 0.18 -1.7 362,626 - DDA3937_RS01655 0.18 -1.9 362,626 - DDA3937_RS01655 0.18 -1.5 362,626 - DDA3937_RS01655 0.18 -1.6 362,626 - DDA3937_RS01655 0.18 +1.4 362,626 - DDA3937_RS01655 0.18 -0.5 362,626 - DDA3937_RS01655 0.18 +2.2 362,626 - DDA3937_RS01655 0.18 +1.3 362,643 - DDA3937_RS01655 0.23 -0.5 362,643 - DDA3937_RS01655 0.23 -1.0 362,643 - DDA3937_RS01655 0.23 -3.3 362,643 - DDA3937_RS01655 0.23 +0.5 362,814 + DDA3937_RS01655 0.64 +1.0 362,814 + DDA3937_RS01655 0.64 -0.5 362,871 + DDA3937_RS01655 0.78 -2.5 362,871 + DDA3937_RS01655 0.78 +1.2 362,872 - DDA3937_RS01655 0.78 -0.2 362,872 - DDA3937_RS01655 0.78 -0.8 362,872 - DDA3937_RS01655 0.78 -1.5 362,872 - DDA3937_RS01655 0.78 +1.2 362,879 + DDA3937_RS01655 0.80 -1.1 362,882 + DDA3937_RS01655 0.81 -1.0 362,882 + DDA3937_RS01655 0.81 +0.1 362,883 - DDA3937_RS01655 0.81 -1.5 362,892 + DDA3937_RS01655 0.83 -3.1 362,892 + DDA3937_RS01655 0.83 -0.0 362,895 + DDA3937_RS01655 0.84 -1.1 362,896 - DDA3937_RS01655 0.84 -1.4 362,896 - DDA3937_RS01655 0.84 -1.2 362,905 + DDA3937_RS01655 0.86 -0.7 362,906 - DDA3937_RS01655 0.87 -1.8
Or see this region's nucleotide sequence