Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01365 and DDA3937_RS01370 are separated by 149 nucleotides DDA3937_RS01370 and DDA3937_RS01375 are separated by 23 nucleotides DDA3937_RS01375 and DDA3937_RS01380 are separated by 352 nucleotides
DDA3937_RS01365: DDA3937_RS01365 - phage tail tape measure protein, at 304,407 to 307,235
_RS01365
DDA3937_RS01370: DDA3937_RS01370 - DNA-binding transcriptional regulator Fis, at 307,385 to 307,681
_RS01370
DDA3937_RS01375: DDA3937_RS01375 - tRNA dihydrouridine synthase DusB, at 307,705 to 308,670
_RS01375
DDA3937_RS01380: DDA3937_RS01380 - 50S ribosomal protein L11 methyltransferase, at 309,023 to 309,910
_RS01380
Position (kb) 307
308
309 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 306.723 kb on + strand, within DDA3937_RS01365 at 306.723 kb on + strand, within DDA3937_RS01365 at 306.723 kb on + strand, within DDA3937_RS01365 at 306.723 kb on + strand, within DDA3937_RS01365 at 306.723 kb on + strand, within DDA3937_RS01365 at 306.723 kb on + strand, within DDA3937_RS01365 at 306.723 kb on + strand, within DDA3937_RS01365 at 306.723 kb on + strand, within DDA3937_RS01365 at 306.724 kb on - strand, within DDA3937_RS01365 at 306.724 kb on - strand, within DDA3937_RS01365 at 306.724 kb on - strand, within DDA3937_RS01365 at 306.724 kb on - strand, within DDA3937_RS01365 at 306.724 kb on - strand, within DDA3937_RS01365 at 306.724 kb on - strand, within DDA3937_RS01365 at 306.724 kb on - strand, within DDA3937_RS01365 at 306.724 kb on - strand, within DDA3937_RS01365 at 306.724 kb on - strand, within DDA3937_RS01365 at 306.752 kb on + strand, within DDA3937_RS01365 at 306.752 kb on + strand, within DDA3937_RS01365 at 306.753 kb on - strand, within DDA3937_RS01365 at 306.753 kb on - strand, within DDA3937_RS01365 at 306.815 kb on + strand, within DDA3937_RS01365 at 306.815 kb on + strand, within DDA3937_RS01365 at 306.828 kb on + strand, within DDA3937_RS01365 at 306.828 kb on + strand, within DDA3937_RS01365 at 306.828 kb on + strand, within DDA3937_RS01365 at 306.829 kb on - strand, within DDA3937_RS01365 at 306.830 kb on + strand, within DDA3937_RS01365 at 306.830 kb on + strand, within DDA3937_RS01365 at 306.830 kb on + strand, within DDA3937_RS01365 at 306.831 kb on - strand, within DDA3937_RS01365 at 306.831 kb on - strand, within DDA3937_RS01365 at 306.831 kb on - strand, within DDA3937_RS01365 at 306.878 kb on + strand, within DDA3937_RS01365 at 306.890 kb on + strand, within DDA3937_RS01365 at 306.891 kb on - strand, within DDA3937_RS01365 at 306.891 kb on - strand, within DDA3937_RS01365 at 306.893 kb on + strand, within DDA3937_RS01365 at 306.894 kb on - strand, within DDA3937_RS01365 at 306.894 kb on - strand, within DDA3937_RS01365 at 306.894 kb on - strand, within DDA3937_RS01365 at 306.939 kb on - strand, within DDA3937_RS01365 at 306.950 kb on + strand, within DDA3937_RS01365 at 306.950 kb on + strand, within DDA3937_RS01365 at 306.978 kb on + strand at 306.978 kb on + strand at 306.979 kb on - strand at 306.979 kb on - strand at 306.979 kb on - strand at 306.979 kb on - strand at 306.980 kb on + strand at 306.980 kb on + strand at 306.981 kb on - strand at 306.981 kb on - strand at 306.981 kb on - strand at 306.981 kb on - strand at 307.031 kb on + strand at 307.031 kb on + strand at 307.031 kb on + strand at 307.031 kb on + strand at 307.031 kb on + strand at 307.032 kb on - strand at 307.032 kb on - strand at 307.032 kb on - strand at 307.032 kb on - strand at 307.032 kb on - strand at 307.034 kb on + strand at 307.035 kb on - strand at 307.073 kb on + strand at 307.122 kb on - strand at 307.142 kb on + strand at 307.142 kb on + strand at 307.143 kb on - strand at 307.154 kb on - strand at 307.154 kb on - strand at 307.154 kb on - strand at 307.156 kb on + strand at 307.156 kb on + strand at 307.157 kb on - strand at 307.157 kb on - strand at 307.157 kb on - strand at 307.157 kb on - strand at 307.157 kb on - strand at 307.261 kb on + strand at 307.261 kb on + strand at 307.262 kb on - strand at 307.262 kb on - strand at 307.279 kb on + strand at 307.279 kb on + strand at 307.280 kb on - strand at 307.477 kb on - strand, within DDA3937_RS01370 at 307.617 kb on - strand, within DDA3937_RS01370 at 307.725 kb on - strand at 307.725 kb on - strand at 307.815 kb on - strand, within DDA3937_RS01375 at 307.838 kb on - strand, within DDA3937_RS01375 at 307.838 kb on - strand, within DDA3937_RS01375 at 307.882 kb on + strand, within DDA3937_RS01375 at 307.885 kb on - strand, within DDA3937_RS01375 at 307.885 kb on - strand, within DDA3937_RS01375 at 307.885 kb on - strand, within DDA3937_RS01375 at 307.953 kb on - strand, within DDA3937_RS01375 at 308.003 kb on - strand, within DDA3937_RS01375 at 308.028 kb on - strand, within DDA3937_RS01375 at 308.028 kb on - strand, within DDA3937_RS01375 at 308.224 kb on - strand, within DDA3937_RS01375 at 308.276 kb on - strand, within DDA3937_RS01375 at 308.309 kb on - strand at 308.309 kb on - strand, within DDA3937_RS01375 at 308.309 kb on - strand, within DDA3937_RS01375 at 308.309 kb on - strand, within DDA3937_RS01375 at 308.491 kb on - strand, within DDA3937_RS01375 at 308.491 kb on - strand, within DDA3937_RS01375 at 308.495 kb on - strand, within DDA3937_RS01375 at 308.495 kb on - strand, within DDA3937_RS01375 at 308.495 kb on - strand, within DDA3937_RS01375 at 308.495 kb on - strand, within DDA3937_RS01375 at 308.495 kb on - strand, within DDA3937_RS01375 at 308.495 kb on - strand, within DDA3937_RS01375 at 308.495 kb on - strand, within DDA3937_RS01375 at 308.495 kb on - strand, within DDA3937_RS01375 at 308.495 kb on - strand, within DDA3937_RS01375 at 308.671 kb on - strand at 308.688 kb on - strand at 308.688 kb on - strand at 308.688 kb on - strand at 308.688 kb on - strand at 308.708 kb on + strand at 308.708 kb on + strand at 308.709 kb on - strand at 308.709 kb on - strand at 308.709 kb on - strand at 308.711 kb on - strand at 308.714 kb on - strand at 308.884 kb on + strand at 308.885 kb on - strand at 308.929 kb on + strand at 308.946 kb on + strand at 308.946 kb on + strand at 308.947 kb on - strand at 308.947 kb on - strand at 308.949 kb on + strand at 308.949 kb on + strand at 308.949 kb on + strand at 308.950 kb on - strand at 308.950 kb on - strand at 308.950 kb on - strand at 308.950 kb on - strand at 308.968 kb on - strand at 309.103 kb on - strand at 309.103 kb on - strand at 309.103 kb on - strand at 309.273 kb on + strand, within DDA3937_RS01380 at 309.273 kb on + strand, within DDA3937_RS01380 at 309.274 kb on - strand, within DDA3937_RS01380 at 309.274 kb on - strand, within DDA3937_RS01380 at 309.274 kb on - strand, within DDA3937_RS01380 at 309.301 kb on + strand, within DDA3937_RS01380
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 306,723 + DDA3937_RS01365 0.82 +0.7 306,723 + DDA3937_RS01365 0.82 -0.0 306,723 + DDA3937_RS01365 0.82 -0.1 306,723 + DDA3937_RS01365 0.82 -0.4 306,723 + DDA3937_RS01365 0.82 +0.1 306,723 + DDA3937_RS01365 0.82 +0.6 306,723 + DDA3937_RS01365 0.82 +0.3 306,723 + DDA3937_RS01365 0.82 -1.2 306,724 - DDA3937_RS01365 0.82 -1.1 306,724 - DDA3937_RS01365 0.82 -2.0 306,724 - DDA3937_RS01365 0.82 +0.2 306,724 - DDA3937_RS01365 0.82 -1.9 306,724 - DDA3937_RS01365 0.82 +0.7 306,724 - DDA3937_RS01365 0.82 +1.3 306,724 - DDA3937_RS01365 0.82 -3.0 306,724 - DDA3937_RS01365 0.82 +1.6 306,724 - DDA3937_RS01365 0.82 -2.7 306,752 + DDA3937_RS01365 0.83 -0.1 306,752 + DDA3937_RS01365 0.83 +0.4 306,753 - DDA3937_RS01365 0.83 -2.0 306,753 - DDA3937_RS01365 0.83 -2.5 306,815 + DDA3937_RS01365 0.85 -0.7 306,815 + DDA3937_RS01365 0.85 +0.3 306,828 + DDA3937_RS01365 0.86 +0.0 306,828 + DDA3937_RS01365 0.86 +0.8 306,828 + DDA3937_RS01365 0.86 -0.6 306,829 - DDA3937_RS01365 0.86 +0.8 306,830 + DDA3937_RS01365 0.86 -1.2 306,830 + DDA3937_RS01365 0.86 -0.4 306,830 + DDA3937_RS01365 0.86 +3.1 306,831 - DDA3937_RS01365 0.86 -1.1 306,831 - DDA3937_RS01365 0.86 -1.3 306,831 - DDA3937_RS01365 0.86 +0.1 306,878 + DDA3937_RS01365 0.87 -1.8 306,890 + DDA3937_RS01365 0.88 -0.4 306,891 - DDA3937_RS01365 0.88 -0.9 306,891 - DDA3937_RS01365 0.88 -0.9 306,893 + DDA3937_RS01365 0.88 -2.1 306,894 - DDA3937_RS01365 0.88 -0.5 306,894 - DDA3937_RS01365 0.88 +1.6 306,894 - DDA3937_RS01365 0.88 +0.2 306,939 - DDA3937_RS01365 0.90 -1.2 306,950 + DDA3937_RS01365 0.90 -1.4 306,950 + DDA3937_RS01365 0.90 -0.3 306,978 + +0.5 306,978 + +0.9 306,979 - -0.9 306,979 - -3.2 306,979 - -1.2 306,979 - +0.1 306,980 + +0.1 306,980 + +0.2 306,981 - +0.5 306,981 - +0.1 306,981 - -0.5 306,981 - -0.2 307,031 + -2.2 307,031 + +1.3 307,031 + +0.5 307,031 + -0.2 307,031 + -1.7 307,032 - -0.4 307,032 - -0.2 307,032 - +0.6 307,032 - +0.2 307,032 - -2.0 307,034 + +0.1 307,035 - -2.8 307,073 + +0.6 307,122 - +1.1 307,142 + -1.2 307,142 + +1.3 307,143 - +0.1 307,154 - -0.6 307,154 - -2.2 307,154 - -2.1 307,156 + +0.8 307,156 + +0.6 307,157 - -2.3 307,157 - -1.8 307,157 - +0.3 307,157 - -0.2 307,157 - -0.0 307,261 + -0.9 307,261 + -0.4 307,262 - -1.1 307,262 - -1.9 307,279 + +0.3 307,279 + +0.0 307,280 - -3.9 307,477 - DDA3937_RS01370 0.31 +0.5 307,617 - DDA3937_RS01370 0.78 +0.1 307,725 - +0.1 307,725 - +0.5 307,815 - DDA3937_RS01375 0.11 +4.1 307,838 - DDA3937_RS01375 0.14 -1.6 307,838 - DDA3937_RS01375 0.14 +2.8 307,882 + DDA3937_RS01375 0.18 +3.5 307,885 - DDA3937_RS01375 0.19 +0.1 307,885 - DDA3937_RS01375 0.19 +2.7 307,885 - DDA3937_RS01375 0.19 +1.4 307,953 - DDA3937_RS01375 0.26 -0.1 308,003 - DDA3937_RS01375 0.31 -0.5 308,028 - DDA3937_RS01375 0.33 +3.6 308,028 - DDA3937_RS01375 0.33 -1.7 308,224 - DDA3937_RS01375 0.54 +4.2 308,276 - DDA3937_RS01375 0.59 +0.9 308,309 - +0.5 308,309 - DDA3937_RS01375 0.63 +1.4 308,309 - DDA3937_RS01375 0.63 +0.6 308,309 - DDA3937_RS01375 0.63 -0.2 308,491 - DDA3937_RS01375 0.81 +1.3 308,491 - DDA3937_RS01375 0.81 +2.5 308,495 - DDA3937_RS01375 0.82 +0.4 308,495 - DDA3937_RS01375 0.82 +1.1 308,495 - DDA3937_RS01375 0.82 -0.7 308,495 - DDA3937_RS01375 0.82 -2.3 308,495 - DDA3937_RS01375 0.82 +3.1 308,495 - DDA3937_RS01375 0.82 -1.4 308,495 - DDA3937_RS01375 0.82 +0.4 308,495 - DDA3937_RS01375 0.82 +0.8 308,495 - DDA3937_RS01375 0.82 +3.1 308,671 - +1.0 308,688 - +3.5 308,688 - -0.5 308,688 - +0.3 308,688 - +0.4 308,708 + +0.9 308,708 + -0.2 308,709 - +0.7 308,709 - +1.8 308,709 - +0.5 308,711 - +2.6 308,714 - +3.7 308,884 + -1.1 308,885 - -0.9 308,929 + -0.5 308,946 + +0.9 308,946 + +0.9 308,947 - +0.9 308,947 - +2.1 308,949 + +0.5 308,949 + -2.4 308,949 + -2.1 308,950 - -0.3 308,950 - +2.4 308,950 - -2.0 308,950 - -0.5 308,968 - +1.9 309,103 - -1.7 309,103 - -1.7 309,103 - -2.3 309,273 + DDA3937_RS01380 0.28 +0.3 309,273 + DDA3937_RS01380 0.28 -0.6 309,274 - DDA3937_RS01380 0.28 -0.2 309,274 - DDA3937_RS01380 0.28 -0.9 309,274 - DDA3937_RS01380 0.28 -1.6 309,301 + DDA3937_RS01380 0.31 -0.9
Or see this region's nucleotide sequence