Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01215 and DDA3937_RS01220 are separated by 15 nucleotides DDA3937_RS01220 and DDA3937_RS01225 are separated by 599 nucleotides
DDA3937_RS01215: DDA3937_RS01215 - phosphoribosylamine--glycine ligase, at 275,011 to 276,300
_RS01215
DDA3937_RS01220: DDA3937_RS01220 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 276,316 to 277,905
_RS01220
DDA3937_RS01225: DDA3937_RS01225 - 16S ribosomal RNA, at 278,505 to 280,046
_RS01225
Position (kb) 276
277
278 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 275.377 kb on + strand, within DDA3937_RS01215 at 275.378 kb on - strand, within DDA3937_RS01215 at 275.378 kb on - strand, within DDA3937_RS01215 at 275.504 kb on + strand, within DDA3937_RS01215 at 275.504 kb on + strand, within DDA3937_RS01215 at 275.504 kb on + strand, within DDA3937_RS01215 at 275.504 kb on + strand, within DDA3937_RS01215 at 275.504 kb on + strand, within DDA3937_RS01215 at 275.504 kb on + strand, within DDA3937_RS01215 at 275.505 kb on - strand, within DDA3937_RS01215 at 275.505 kb on - strand, within DDA3937_RS01215 at 275.547 kb on + strand, within DDA3937_RS01215 at 275.547 kb on + strand, within DDA3937_RS01215 at 275.548 kb on - strand, within DDA3937_RS01215 at 275.548 kb on - strand, within DDA3937_RS01215 at 275.548 kb on - strand, within DDA3937_RS01215 at 275.603 kb on + strand, within DDA3937_RS01215 at 275.603 kb on + strand, within DDA3937_RS01215 at 275.603 kb on + strand, within DDA3937_RS01215 at 275.710 kb on - strand, within DDA3937_RS01215 at 275.900 kb on + strand, within DDA3937_RS01215 at 275.900 kb on + strand, within DDA3937_RS01215 at 275.901 kb on - strand, within DDA3937_RS01215 at 275.901 kb on - strand, within DDA3937_RS01215 at 275.901 kb on - strand, within DDA3937_RS01215 at 275.901 kb on - strand, within DDA3937_RS01215 at 275.936 kb on + strand, within DDA3937_RS01215 at 275.952 kb on + strand, within DDA3937_RS01215 at 275.953 kb on - strand, within DDA3937_RS01215 at 276.096 kb on + strand, within DDA3937_RS01215 at 276.097 kb on - strand, within DDA3937_RS01215 at 276.097 kb on - strand, within DDA3937_RS01215 at 276.215 kb on + strand at 276.215 kb on + strand at 276.215 kb on + strand at 276.216 kb on - strand at 276.285 kb on + strand at 276.294 kb on + strand at 276.295 kb on - strand at 276.307 kb on - strand at 276.307 kb on - strand at 276.317 kb on + strand at 276.318 kb on - strand at 276.318 kb on - strand at 276.433 kb on + strand at 276.591 kb on + strand, within DDA3937_RS01220 at 276.591 kb on + strand, within DDA3937_RS01220 at 276.591 kb on + strand, within DDA3937_RS01220 at 276.591 kb on + strand, within DDA3937_RS01220 at 276.591 kb on + strand, within DDA3937_RS01220 at 276.591 kb on + strand, within DDA3937_RS01220 at 276.591 kb on + strand, within DDA3937_RS01220 at 276.625 kb on - strand, within DDA3937_RS01220 at 276.820 kb on + strand, within DDA3937_RS01220 at 276.820 kb on + strand, within DDA3937_RS01220 at 276.821 kb on - strand, within DDA3937_RS01220 at 276.984 kb on - strand, within DDA3937_RS01220 at 276.984 kb on - strand, within DDA3937_RS01220 at 276.995 kb on + strand, within DDA3937_RS01220 at 277.121 kb on + strand, within DDA3937_RS01220 at 277.155 kb on + strand, within DDA3937_RS01220 at 277.155 kb on + strand, within DDA3937_RS01220 at 277.160 kb on - strand, within DDA3937_RS01220 at 277.186 kb on + strand, within DDA3937_RS01220 at 277.187 kb on - strand, within DDA3937_RS01220 at 277.187 kb on - strand, within DDA3937_RS01220 at 277.189 kb on - strand, within DDA3937_RS01220 at 277.190 kb on + strand, within DDA3937_RS01220 at 277.190 kb on + strand, within DDA3937_RS01220 at 277.190 kb on + strand, within DDA3937_RS01220 at 277.190 kb on + strand, within DDA3937_RS01220 at 277.190 kb on + strand, within DDA3937_RS01220 at 277.190 kb on + strand, within DDA3937_RS01220 at 277.191 kb on - strand, within DDA3937_RS01220 at 277.191 kb on - strand, within DDA3937_RS01220 at 277.191 kb on - strand, within DDA3937_RS01220 at 277.191 kb on - strand, within DDA3937_RS01220 at 277.191 kb on - strand, within DDA3937_RS01220 at 277.317 kb on + strand, within DDA3937_RS01220 at 277.318 kb on - strand, within DDA3937_RS01220 at 277.328 kb on + strand, within DDA3937_RS01220 at 277.328 kb on + strand, within DDA3937_RS01220 at 277.329 kb on - strand, within DDA3937_RS01220 at 277.400 kb on + strand, within DDA3937_RS01220 at 277.401 kb on - strand, within DDA3937_RS01220 at 277.401 kb on - strand, within DDA3937_RS01220 at 277.440 kb on + strand, within DDA3937_RS01220 at 277.440 kb on + strand, within DDA3937_RS01220 at 277.440 kb on + strand, within DDA3937_RS01220 at 277.440 kb on + strand, within DDA3937_RS01220 at 277.440 kb on + strand, within DDA3937_RS01220 at 277.440 kb on + strand, within DDA3937_RS01220 at 277.440 kb on + strand, within DDA3937_RS01220 at 277.440 kb on + strand, within DDA3937_RS01220 at 277.440 kb on + strand, within DDA3937_RS01220 at 277.440 kb on + strand, within DDA3937_RS01220 at 277.440 kb on + strand, within DDA3937_RS01220 at 277.440 kb on + strand, within DDA3937_RS01220 at 277.441 kb on - strand, within DDA3937_RS01220 at 277.441 kb on - strand, within DDA3937_RS01220 at 277.441 kb on - strand, within DDA3937_RS01220 at 277.441 kb on - strand, within DDA3937_RS01220 at 277.441 kb on - strand, within DDA3937_RS01220 at 277.448 kb on + strand, within DDA3937_RS01220 at 277.448 kb on + strand, within DDA3937_RS01220 at 277.448 kb on + strand at 277.449 kb on - strand, within DDA3937_RS01220 at 277.449 kb on - strand, within DDA3937_RS01220 at 277.461 kb on + strand, within DDA3937_RS01220 at 277.510 kb on - strand, within DDA3937_RS01220 at 277.510 kb on - strand, within DDA3937_RS01220 at 277.510 kb on - strand, within DDA3937_RS01220 at 277.603 kb on + strand, within DDA3937_RS01220 at 277.681 kb on + strand, within DDA3937_RS01220 at 277.681 kb on + strand, within DDA3937_RS01220 at 277.681 kb on + strand, within DDA3937_RS01220 at 277.681 kb on + strand, within DDA3937_RS01220 at 277.682 kb on - strand, within DDA3937_RS01220 at 277.682 kb on - strand, within DDA3937_RS01220 at 277.682 kb on - strand, within DDA3937_RS01220 at 277.682 kb on - strand, within DDA3937_RS01220 at 277.682 kb on - strand, within DDA3937_RS01220 at 277.682 kb on - strand, within DDA3937_RS01220 at 277.682 kb on - strand, within DDA3937_RS01220 at 277.682 kb on - strand, within DDA3937_RS01220 at 277.865 kb on - strand at 277.926 kb on + strand at 277.926 kb on + strand at 277.926 kb on + strand at 277.927 kb on - strand at 277.927 kb on - strand at 277.927 kb on - strand at 277.927 kb on - strand at 277.927 kb on - strand at 277.927 kb on - strand at 277.927 kb on - strand at 277.927 kb on - strand at 277.927 kb on - strand at 277.934 kb on + strand at 277.934 kb on + strand at 277.934 kb on + strand at 277.935 kb on - strand at 277.950 kb on - strand at 277.957 kb on + strand at 277.958 kb on - strand at 277.958 kb on - strand at 277.971 kb on + strand at 277.971 kb on + strand at 277.972 kb on - strand at 277.972 kb on - strand at 277.981 kb on + strand at 278.008 kb on - strand at 278.023 kb on - strand at 278.033 kb on + strand at 278.033 kb on + strand at 278.033 kb on + strand at 278.033 kb on + strand at 278.034 kb on - strand at 278.034 kb on - strand at 278.051 kb on - strand at 278.051 kb on - strand at 278.095 kb on + strand at 278.095 kb on + strand at 278.096 kb on - strand at 278.096 kb on - strand at 278.121 kb on + strand at 278.122 kb on - strand at 278.126 kb on + strand at 278.126 kb on + strand at 278.127 kb on - strand at 278.128 kb on + strand at 278.128 kb on + strand at 278.128 kb on + strand at 278.129 kb on - strand at 278.129 kb on - strand at 278.129 kb on - strand at 278.129 kb on - strand at 278.129 kb on - strand at 278.170 kb on - strand at 278.208 kb on - strand at 278.210 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 275,377 + DDA3937_RS01215 0.28 -2.2 275,378 - DDA3937_RS01215 0.28 -1.6 275,378 - DDA3937_RS01215 0.28 -1.9 275,504 + DDA3937_RS01215 0.38 +0.6 275,504 + DDA3937_RS01215 0.38 +1.1 275,504 + DDA3937_RS01215 0.38 -0.2 275,504 + DDA3937_RS01215 0.38 -1.5 275,504 + DDA3937_RS01215 0.38 -0.2 275,504 + DDA3937_RS01215 0.38 -0.7 275,505 - DDA3937_RS01215 0.38 -0.2 275,505 - DDA3937_RS01215 0.38 -1.1 275,547 + DDA3937_RS01215 0.42 +0.5 275,547 + DDA3937_RS01215 0.42 -1.4 275,548 - DDA3937_RS01215 0.42 -1.8 275,548 - DDA3937_RS01215 0.42 -1.5 275,548 - DDA3937_RS01215 0.42 -1.9 275,603 + DDA3937_RS01215 0.46 -0.7 275,603 + DDA3937_RS01215 0.46 -1.8 275,603 + DDA3937_RS01215 0.46 -0.0 275,710 - DDA3937_RS01215 0.54 -1.4 275,900 + DDA3937_RS01215 0.69 -1.1 275,900 + DDA3937_RS01215 0.69 -0.5 275,901 - DDA3937_RS01215 0.69 -1.6 275,901 - DDA3937_RS01215 0.69 +0.3 275,901 - DDA3937_RS01215 0.69 -1.6 275,901 - DDA3937_RS01215 0.69 -1.1 275,936 + DDA3937_RS01215 0.72 -0.7 275,952 + DDA3937_RS01215 0.73 -0.9 275,953 - DDA3937_RS01215 0.73 -2.2 276,096 + DDA3937_RS01215 0.84 +1.5 276,097 - DDA3937_RS01215 0.84 -1.4 276,097 - DDA3937_RS01215 0.84 -2.4 276,215 + +0.3 276,215 + -0.2 276,215 + -2.2 276,216 - -1.7 276,285 + +0.5 276,294 + -0.9 276,295 - -2.4 276,307 - -1.0 276,307 - -0.3 276,317 + -0.9 276,318 - -0.5 276,318 - +0.5 276,433 + -0.1 276,591 + DDA3937_RS01220 0.17 +2.1 276,591 + DDA3937_RS01220 0.17 -0.7 276,591 + DDA3937_RS01220 0.17 -1.2 276,591 + DDA3937_RS01220 0.17 -1.2 276,591 + DDA3937_RS01220 0.17 -1.8 276,591 + DDA3937_RS01220 0.17 -1.7 276,591 + DDA3937_RS01220 0.17 +0.8 276,625 - DDA3937_RS01220 0.19 -0.2 276,820 + DDA3937_RS01220 0.32 -1.6 276,820 + DDA3937_RS01220 0.32 -1.1 276,821 - DDA3937_RS01220 0.32 -2.2 276,984 - DDA3937_RS01220 0.42 -0.7 276,984 - DDA3937_RS01220 0.42 -2.2 276,995 + DDA3937_RS01220 0.43 -0.9 277,121 + DDA3937_RS01220 0.51 +0.5 277,155 + DDA3937_RS01220 0.53 -0.1 277,155 + DDA3937_RS01220 0.53 -0.7 277,160 - DDA3937_RS01220 0.53 -2.5 277,186 + DDA3937_RS01220 0.55 -3.1 277,187 - DDA3937_RS01220 0.55 -0.4 277,187 - DDA3937_RS01220 0.55 -1.7 277,189 - DDA3937_RS01220 0.55 -0.0 277,190 + DDA3937_RS01220 0.55 -1.5 277,190 + DDA3937_RS01220 0.55 -0.5 277,190 + DDA3937_RS01220 0.55 -2.6 277,190 + DDA3937_RS01220 0.55 -0.8 277,190 + DDA3937_RS01220 0.55 -1.4 277,190 + DDA3937_RS01220 0.55 +1.1 277,191 - DDA3937_RS01220 0.55 -1.5 277,191 - DDA3937_RS01220 0.55 +0.1 277,191 - DDA3937_RS01220 0.55 -2.7 277,191 - DDA3937_RS01220 0.55 -3.1 277,191 - DDA3937_RS01220 0.55 -2.1 277,317 + DDA3937_RS01220 0.63 -0.2 277,318 - DDA3937_RS01220 0.63 -0.4 277,328 + DDA3937_RS01220 0.64 +0.1 277,328 + DDA3937_RS01220 0.64 +1.0 277,329 - DDA3937_RS01220 0.64 -1.3 277,400 + DDA3937_RS01220 0.68 -2.7 277,401 - DDA3937_RS01220 0.68 -3.2 277,401 - DDA3937_RS01220 0.68 -2.2 277,440 + DDA3937_RS01220 0.71 -1.6 277,440 + DDA3937_RS01220 0.71 +0.3 277,440 + DDA3937_RS01220 0.71 -0.9 277,440 + DDA3937_RS01220 0.71 -0.9 277,440 + DDA3937_RS01220 0.71 -1.1 277,440 + DDA3937_RS01220 0.71 -1.2 277,440 + DDA3937_RS01220 0.71 -2.1 277,440 + DDA3937_RS01220 0.71 +0.1 277,440 + DDA3937_RS01220 0.71 -0.1 277,440 + DDA3937_RS01220 0.71 -1.1 277,440 + DDA3937_RS01220 0.71 -0.8 277,440 + DDA3937_RS01220 0.71 +0.1 277,441 - DDA3937_RS01220 0.71 +0.1 277,441 - DDA3937_RS01220 0.71 -0.7 277,441 - DDA3937_RS01220 0.71 -2.3 277,441 - DDA3937_RS01220 0.71 -1.7 277,441 - DDA3937_RS01220 0.71 -1.6 277,448 + DDA3937_RS01220 0.71 -3.0 277,448 + DDA3937_RS01220 0.71 -3.1 277,448 + -0.5 277,449 - DDA3937_RS01220 0.71 -0.2 277,449 - DDA3937_RS01220 0.71 -1.5 277,461 + DDA3937_RS01220 0.72 -1.4 277,510 - DDA3937_RS01220 0.75 +0.1 277,510 - DDA3937_RS01220 0.75 -2.3 277,510 - DDA3937_RS01220 0.75 -1.7 277,603 + DDA3937_RS01220 0.81 -3.0 277,681 + DDA3937_RS01220 0.86 -1.2 277,681 + DDA3937_RS01220 0.86 -0.5 277,681 + DDA3937_RS01220 0.86 -1.7 277,681 + DDA3937_RS01220 0.86 +0.3 277,682 - DDA3937_RS01220 0.86 +0.1 277,682 - DDA3937_RS01220 0.86 -1.5 277,682 - DDA3937_RS01220 0.86 -0.4 277,682 - DDA3937_RS01220 0.86 -1.1 277,682 - DDA3937_RS01220 0.86 -3.2 277,682 - DDA3937_RS01220 0.86 -0.9 277,682 - DDA3937_RS01220 0.86 -1.0 277,682 - DDA3937_RS01220 0.86 -2.5 277,865 - -1.7 277,926 + -0.7 277,926 + -0.6 277,926 + -1.7 277,927 - +0.8 277,927 - -0.4 277,927 - -2.0 277,927 - -0.5 277,927 - +0.5 277,927 - +0.1 277,927 - -0.1 277,927 - -0.2 277,927 - +1.8 277,934 + -0.1 277,934 + -0.2 277,934 + +0.1 277,935 - -2.3 277,950 - -0.1 277,957 + -1.5 277,958 - -0.3 277,958 - -0.8 277,971 + +0.3 277,971 + +2.3 277,972 - +1.8 277,972 - +1.9 277,981 + -1.5 278,008 - -1.0 278,023 - -2.4 278,033 + +0.1 278,033 + -0.5 278,033 + -1.5 278,033 + -0.2 278,034 - -2.9 278,034 - +0.5 278,051 - -0.7 278,051 - -0.6 278,095 + -1.2 278,095 + +1.5 278,096 - +1.1 278,096 - -1.3 278,121 + +2.1 278,122 - +0.7 278,126 + -0.3 278,126 + -1.5 278,127 - +0.3 278,128 + +0.3 278,128 + -1.5 278,128 + -0.2 278,129 - +1.0 278,129 - -1.6 278,129 - -1.1 278,129 - -2.0 278,129 - -2.2 278,170 - -2.3 278,208 - -1.4 278,210 - -1.5
Or see this region's nucleotide sequence