Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01200 and DDA3937_RS01205 are separated by 187 nucleotides DDA3937_RS01205 and DDA3937_RS01210 are separated by 4 nucleotides DDA3937_RS01210 and DDA3937_RS01215 are separated by 84 nucleotides
DDA3937_RS01200: DDA3937_RS01200 - YjaG family protein, at 273,161 to 273,751
_RS01200
DDA3937_RS01205: DDA3937_RS01205 - DNA-binding protein HU-alpha, at 273,939 to 274,211
_RS01205
DDA3937_RS01210: DDA3937_RS01210 - DUF1481 domain-containing protein, at 274,216 to 274,926
_RS01210
DDA3937_RS01215: DDA3937_RS01215 - phosphoribosylamine--glycine ligase, at 275,011 to 276,300
_RS01215
Position (kb) 274
275 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 273.217 kb on + strand at 273.217 kb on + strand at 273.218 kb on - strand at 273.218 kb on - strand at 273.218 kb on - strand at 273.223 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.257 kb on + strand, within DDA3937_RS01200 at 273.257 kb on + strand, within DDA3937_RS01200 at 273.257 kb on + strand, within DDA3937_RS01200 at 273.257 kb on + strand, within DDA3937_RS01200 at 273.257 kb on + strand, within DDA3937_RS01200 at 273.258 kb on - strand, within DDA3937_RS01200 at 273.258 kb on - strand, within DDA3937_RS01200 at 273.258 kb on - strand, within DDA3937_RS01200 at 273.414 kb on - strand, within DDA3937_RS01200 at 273.422 kb on + strand, within DDA3937_RS01200 at 273.422 kb on + strand, within DDA3937_RS01200 at 273.422 kb on + strand, within DDA3937_RS01200 at 273.422 kb on + strand, within DDA3937_RS01200 at 273.422 kb on + strand, within DDA3937_RS01200 at 273.422 kb on + strand, within DDA3937_RS01200 at 273.422 kb on + strand, within DDA3937_RS01200 at 273.423 kb on - strand, within DDA3937_RS01200 at 273.423 kb on - strand, within DDA3937_RS01200 at 273.423 kb on - strand, within DDA3937_RS01200 at 273.423 kb on - strand, within DDA3937_RS01200 at 273.423 kb on - strand, within DDA3937_RS01200 at 273.423 kb on - strand, within DDA3937_RS01200 at 273.423 kb on - strand, within DDA3937_RS01200 at 273.429 kb on + strand, within DDA3937_RS01200 at 273.429 kb on + strand, within DDA3937_RS01200 at 273.429 kb on + strand, within DDA3937_RS01200 at 273.429 kb on + strand, within DDA3937_RS01200 at 273.429 kb on + strand, within DDA3937_RS01200 at 273.429 kb on + strand, within DDA3937_RS01200 at 273.430 kb on - strand, within DDA3937_RS01200 at 273.430 kb on - strand, within DDA3937_RS01200 at 273.430 kb on - strand, within DDA3937_RS01200 at 273.430 kb on - strand, within DDA3937_RS01200 at 273.430 kb on - strand, within DDA3937_RS01200 at 273.430 kb on - strand, within DDA3937_RS01200 at 273.430 kb on - strand, within DDA3937_RS01200 at 273.431 kb on + strand, within DDA3937_RS01200 at 273.432 kb on - strand, within DDA3937_RS01200 at 273.684 kb on + strand, within DDA3937_RS01200 at 273.684 kb on + strand, within DDA3937_RS01200 at 273.685 kb on - strand, within DDA3937_RS01200 at 273.685 kb on - strand, within DDA3937_RS01200 at 273.685 kb on - strand, within DDA3937_RS01200 at 273.722 kb on - strand at 273.725 kb on - strand at 273.743 kb on + strand at 273.744 kb on - strand at 273.744 kb on - strand at 273.769 kb on + strand at 273.770 kb on - strand at 273.792 kb on + strand at 273.793 kb on - strand at 273.821 kb on + strand at 273.861 kb on + strand at 273.879 kb on + strand at 273.879 kb on + strand at 273.881 kb on + strand at 274.209 kb on + strand at 274.210 kb on - strand at 274.323 kb on + strand, within DDA3937_RS01210 at 274.324 kb on - strand, within DDA3937_RS01210 at 274.324 kb on - strand, within DDA3937_RS01210 at 274.324 kb on - strand, within DDA3937_RS01210 at 274.324 kb on - strand, within DDA3937_RS01210 at 274.332 kb on + strand, within DDA3937_RS01210 at 274.333 kb on - strand, within DDA3937_RS01210 at 274.351 kb on + strand, within DDA3937_RS01210 at 274.351 kb on + strand, within DDA3937_RS01210 at 274.352 kb on - strand, within DDA3937_RS01210 at 274.385 kb on + strand, within DDA3937_RS01210 at 274.385 kb on + strand, within DDA3937_RS01210 at 274.399 kb on - strand, within DDA3937_RS01210 at 274.399 kb on - strand, within DDA3937_RS01210 at 274.451 kb on + strand at 274.452 kb on - strand, within DDA3937_RS01210 at 274.522 kb on + strand, within DDA3937_RS01210 at 274.522 kb on + strand, within DDA3937_RS01210 at 274.523 kb on - strand, within DDA3937_RS01210 at 274.582 kb on + strand, within DDA3937_RS01210 at 274.582 kb on + strand, within DDA3937_RS01210 at 274.582 kb on + strand, within DDA3937_RS01210 at 274.583 kb on - strand, within DDA3937_RS01210 at 274.583 kb on - strand, within DDA3937_RS01210 at 274.583 kb on - strand, within DDA3937_RS01210 at 274.583 kb on - strand, within DDA3937_RS01210 at 274.700 kb on + strand, within DDA3937_RS01210 at 274.701 kb on - strand, within DDA3937_RS01210 at 274.701 kb on - strand, within DDA3937_RS01210 at 274.701 kb on - strand, within DDA3937_RS01210 at 274.925 kb on - strand at 274.938 kb on + strand at 274.938 kb on + strand at 274.938 kb on + strand at 274.939 kb on - strand at 274.939 kb on - strand at 274.939 kb on - strand at 274.939 kb on - strand at 274.939 kb on - strand at 274.939 kb on - strand at 274.939 kb on - strand at 274.948 kb on - strand at 275.006 kb on + strand at 275.079 kb on + strand at 275.079 kb on + strand at 275.080 kb on - strand at 275.080 kb on - strand at 275.099 kb on + strand at 275.099 kb on + strand at 275.377 kb on + strand, within DDA3937_RS01215 at 275.378 kb on - strand, within DDA3937_RS01215 at 275.378 kb on - strand, within DDA3937_RS01215 at 275.504 kb on + strand, within DDA3937_RS01215 at 275.504 kb on + strand, within DDA3937_RS01215 at 275.504 kb on + strand, within DDA3937_RS01215 at 275.504 kb on + strand, within DDA3937_RS01215 at 275.504 kb on + strand, within DDA3937_RS01215 at 275.504 kb on + strand, within DDA3937_RS01215 at 275.505 kb on - strand, within DDA3937_RS01215 at 275.505 kb on - strand, within DDA3937_RS01215 at 275.547 kb on + strand, within DDA3937_RS01215 at 275.547 kb on + strand, within DDA3937_RS01215 at 275.548 kb on - strand, within DDA3937_RS01215 at 275.548 kb on - strand, within DDA3937_RS01215 at 275.548 kb on - strand, within DDA3937_RS01215 at 275.603 kb on + strand, within DDA3937_RS01215 at 275.603 kb on + strand, within DDA3937_RS01215 at 275.603 kb on + strand, within DDA3937_RS01215 at 275.710 kb on - strand, within DDA3937_RS01215 at 275.900 kb on + strand, within DDA3937_RS01215 at 275.900 kb on + strand, within DDA3937_RS01215 at 275.901 kb on - strand, within DDA3937_RS01215 at 275.901 kb on - strand, within DDA3937_RS01215 at 275.901 kb on - strand, within DDA3937_RS01215 at 275.901 kb on - strand, within DDA3937_RS01215
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 273,217 + +0.2 273,217 + -0.1 273,218 - -1.8 273,218 - -1.5 273,218 - +0.7 273,223 + DDA3937_RS01200 0.10 -0.5 273,244 + DDA3937_RS01200 0.14 +0.5 273,244 + DDA3937_RS01200 0.14 -0.9 273,244 + DDA3937_RS01200 0.14 -1.2 273,244 + DDA3937_RS01200 0.14 -0.4 273,244 + DDA3937_RS01200 0.14 +2.2 273,244 + DDA3937_RS01200 0.14 -0.2 273,244 + DDA3937_RS01200 0.14 -0.6 273,244 + DDA3937_RS01200 0.14 -0.7 273,244 + DDA3937_RS01200 0.14 -1.1 273,244 + DDA3937_RS01200 0.14 -0.9 273,244 + DDA3937_RS01200 0.14 -1.8 273,244 + DDA3937_RS01200 0.14 +1.4 273,244 + DDA3937_RS01200 0.14 +2.1 273,244 + DDA3937_RS01200 0.14 -0.1 273,244 + DDA3937_RS01200 0.14 -1.2 273,244 + DDA3937_RS01200 0.14 -0.2 273,244 + DDA3937_RS01200 0.14 -0.6 273,244 + DDA3937_RS01200 0.14 +0.8 273,244 + DDA3937_RS01200 0.14 +0.5 273,244 + DDA3937_RS01200 0.14 +1.9 273,244 + DDA3937_RS01200 0.14 +0.1 273,244 + DDA3937_RS01200 0.14 +0.5 273,245 - DDA3937_RS01200 0.14 -2.7 273,245 - DDA3937_RS01200 0.14 +0.0 273,245 - +0.1 273,245 - DDA3937_RS01200 0.14 -1.2 273,245 - DDA3937_RS01200 0.14 -0.8 273,245 - DDA3937_RS01200 0.14 -1.7 273,245 - DDA3937_RS01200 0.14 +0.8 273,245 - DDA3937_RS01200 0.14 -1.2 273,245 - DDA3937_RS01200 0.14 -2.0 273,245 - DDA3937_RS01200 0.14 -0.4 273,245 - DDA3937_RS01200 0.14 +0.4 273,245 - DDA3937_RS01200 0.14 -0.1 273,245 - DDA3937_RS01200 0.14 +1.2 273,245 - DDA3937_RS01200 0.14 -0.9 273,257 + DDA3937_RS01200 0.16 +1.7 273,257 + DDA3937_RS01200 0.16 +1.5 273,257 + DDA3937_RS01200 0.16 +0.4 273,257 + DDA3937_RS01200 0.16 +0.9 273,257 + DDA3937_RS01200 0.16 -3.0 273,258 - DDA3937_RS01200 0.16 +0.2 273,258 - DDA3937_RS01200 0.16 -1.5 273,258 - DDA3937_RS01200 0.16 -1.0 273,414 - DDA3937_RS01200 0.43 +0.1 273,422 + DDA3937_RS01200 0.44 -0.9 273,422 + DDA3937_RS01200 0.44 +0.5 273,422 + DDA3937_RS01200 0.44 -2.7 273,422 + DDA3937_RS01200 0.44 +0.9 273,422 + DDA3937_RS01200 0.44 +1.4 273,422 + DDA3937_RS01200 0.44 -0.6 273,422 + DDA3937_RS01200 0.44 -2.6 273,423 - DDA3937_RS01200 0.44 -0.4 273,423 - DDA3937_RS01200 0.44 -1.7 273,423 - DDA3937_RS01200 0.44 -0.0 273,423 - DDA3937_RS01200 0.44 +0.5 273,423 - DDA3937_RS01200 0.44 -0.5 273,423 - DDA3937_RS01200 0.44 -1.5 273,423 - DDA3937_RS01200 0.44 +0.1 273,429 + DDA3937_RS01200 0.45 -1.2 273,429 + DDA3937_RS01200 0.45 +0.6 273,429 + DDA3937_RS01200 0.45 -0.7 273,429 + DDA3937_RS01200 0.45 -1.5 273,429 + DDA3937_RS01200 0.45 +4.2 273,429 + DDA3937_RS01200 0.45 +2.9 273,430 - DDA3937_RS01200 0.46 +0.9 273,430 - DDA3937_RS01200 0.46 -0.7 273,430 - DDA3937_RS01200 0.46 +0.3 273,430 - DDA3937_RS01200 0.46 -2.3 273,430 - DDA3937_RS01200 0.46 -1.2 273,430 - DDA3937_RS01200 0.46 -1.7 273,430 - DDA3937_RS01200 0.46 -0.9 273,431 + DDA3937_RS01200 0.46 -1.1 273,432 - DDA3937_RS01200 0.46 +0.1 273,684 + DDA3937_RS01200 0.88 +1.3 273,684 + DDA3937_RS01200 0.88 -2.4 273,685 - DDA3937_RS01200 0.89 +0.8 273,685 - DDA3937_RS01200 0.89 +0.1 273,685 - DDA3937_RS01200 0.89 -3.2 273,722 - +0.4 273,725 - +1.4 273,743 + -1.8 273,744 - +1.9 273,744 - -0.2 273,769 + +1.0 273,770 - -1.4 273,792 + -0.2 273,793 - -0.4 273,821 + +0.6 273,861 + +1.5 273,879 + +1.3 273,879 + -2.4 273,881 + +1.0 274,209 + +1.8 274,210 - -0.9 274,323 + DDA3937_RS01210 0.15 -0.5 274,324 - DDA3937_RS01210 0.15 +2.5 274,324 - DDA3937_RS01210 0.15 -0.4 274,324 - DDA3937_RS01210 0.15 -1.4 274,324 - DDA3937_RS01210 0.15 -0.2 274,332 + DDA3937_RS01210 0.16 -1.5 274,333 - DDA3937_RS01210 0.16 -0.2 274,351 + DDA3937_RS01210 0.19 -2.4 274,351 + DDA3937_RS01210 0.19 -1.7 274,352 - DDA3937_RS01210 0.19 +1.5 274,385 + DDA3937_RS01210 0.24 -1.0 274,385 + DDA3937_RS01210 0.24 +1.5 274,399 - DDA3937_RS01210 0.26 -1.1 274,399 - DDA3937_RS01210 0.26 +0.1 274,451 + +1.1 274,452 - DDA3937_RS01210 0.33 -0.7 274,522 + DDA3937_RS01210 0.43 -0.9 274,522 + DDA3937_RS01210 0.43 -1.5 274,523 - DDA3937_RS01210 0.43 -1.5 274,582 + DDA3937_RS01210 0.51 -1.6 274,582 + DDA3937_RS01210 0.51 +1.7 274,582 + DDA3937_RS01210 0.51 -1.0 274,583 - DDA3937_RS01210 0.52 -3.0 274,583 - DDA3937_RS01210 0.52 +0.3 274,583 - DDA3937_RS01210 0.52 -1.2 274,583 - DDA3937_RS01210 0.52 -0.7 274,700 + DDA3937_RS01210 0.68 -1.1 274,701 - DDA3937_RS01210 0.68 -1.7 274,701 - DDA3937_RS01210 0.68 -0.5 274,701 - DDA3937_RS01210 0.68 -1.2 274,925 - -2.0 274,938 + -1.4 274,938 + -0.1 274,938 + -0.8 274,939 - -1.3 274,939 - -1.3 274,939 - +0.6 274,939 - +0.6 274,939 - -0.2 274,939 - -1.2 274,939 - -0.2 274,948 - -1.2 275,006 + -1.5 275,079 + -0.5 275,079 + -1.6 275,080 - -0.2 275,080 - -0.9 275,099 + +0.7 275,099 + -1.3 275,377 + DDA3937_RS01215 0.28 -2.2 275,378 - DDA3937_RS01215 0.28 -1.6 275,378 - DDA3937_RS01215 0.28 -1.9 275,504 + DDA3937_RS01215 0.38 +0.6 275,504 + DDA3937_RS01215 0.38 +1.1 275,504 + DDA3937_RS01215 0.38 -0.2 275,504 + DDA3937_RS01215 0.38 -1.5 275,504 + DDA3937_RS01215 0.38 -0.2 275,504 + DDA3937_RS01215 0.38 -0.7 275,505 - DDA3937_RS01215 0.38 -0.2 275,505 - DDA3937_RS01215 0.38 -1.1 275,547 + DDA3937_RS01215 0.42 +0.5 275,547 + DDA3937_RS01215 0.42 -1.4 275,548 - DDA3937_RS01215 0.42 -1.8 275,548 - DDA3937_RS01215 0.42 -1.5 275,548 - DDA3937_RS01215 0.42 -1.9 275,603 + DDA3937_RS01215 0.46 -0.7 275,603 + DDA3937_RS01215 0.46 -1.8 275,603 + DDA3937_RS01215 0.46 -0.0 275,710 - DDA3937_RS01215 0.54 -1.4 275,900 + DDA3937_RS01215 0.69 -1.1 275,900 + DDA3937_RS01215 0.69 -0.5 275,901 - DDA3937_RS01215 0.69 -1.6 275,901 - DDA3937_RS01215 0.69 +0.3 275,901 - DDA3937_RS01215 0.69 -1.6 275,901 - DDA3937_RS01215 0.69 -1.1
Or see this region's nucleotide sequence