Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01175 and DDA3937_RS01180 are separated by 431 nucleotides DDA3937_RS01180 and DDA3937_RS01185 are separated by 103 nucleotides DDA3937_RS01185 and DDA3937_RS01190 are separated by 55 nucleotides
DDA3937_RS01175: DDA3937_RS01175 - phosphomethylpyrimidine synthase ThiC, at 267,637 to 269,508
_RS01175
DDA3937_RS01180: DDA3937_RS01180 - Rsd/AlgQ family anti-sigma factor, at 269,940 to 270,389
_RS01180
DDA3937_RS01185: DDA3937_RS01185 - NAD(+) diphosphatase, at 270,493 to 271,266
_RS01185
DDA3937_RS01190: DDA3937_RS01190 - uroporphyrinogen decarboxylase, at 271,322 to 272,395
_RS01190
Position (kb) 270
271
272 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 269.616 kb on + strand at 269.616 kb on + strand at 269.617 kb on - strand at 269.617 kb on - strand at 269.623 kb on - strand at 269.641 kb on - strand at 269.676 kb on + strand at 269.769 kb on + strand at 269.769 kb on + strand at 269.769 kb on + strand at 269.771 kb on + strand at 269.771 kb on + strand at 269.771 kb on + strand at 269.771 kb on + strand at 269.771 kb on + strand at 269.771 kb on + strand at 269.771 kb on + strand at 269.772 kb on - strand at 269.772 kb on - strand at 269.772 kb on - strand at 269.772 kb on - strand at 269.772 kb on - strand at 269.775 kb on + strand at 269.775 kb on + strand at 269.775 kb on + strand at 269.776 kb on - strand at 269.776 kb on - strand at 269.776 kb on - strand at 269.852 kb on + strand at 269.902 kb on + strand at 269.903 kb on - strand at 269.918 kb on + strand at 269.918 kb on + strand at 269.919 kb on - strand at 269.919 kb on - strand at 270.076 kb on + strand, within DDA3937_RS01180 at 270.076 kb on + strand, within DDA3937_RS01180 at 270.076 kb on + strand, within DDA3937_RS01180 at 270.077 kb on - strand, within DDA3937_RS01180 at 270.077 kb on - strand, within DDA3937_RS01180 at 270.080 kb on + strand, within DDA3937_RS01180 at 270.184 kb on + strand, within DDA3937_RS01180 at 270.184 kb on + strand, within DDA3937_RS01180 at 270.184 kb on + strand, within DDA3937_RS01180 at 270.184 kb on + strand, within DDA3937_RS01180 at 270.185 kb on - strand, within DDA3937_RS01180 at 270.211 kb on + strand, within DDA3937_RS01180 at 270.211 kb on + strand at 270.211 kb on + strand, within DDA3937_RS01180 at 270.211 kb on + strand, within DDA3937_RS01180 at 270.211 kb on + strand, within DDA3937_RS01180 at 270.211 kb on + strand, within DDA3937_RS01180 at 270.212 kb on - strand, within DDA3937_RS01180 at 270.259 kb on - strand, within DDA3937_RS01180 at 270.289 kb on + strand, within DDA3937_RS01180 at 270.289 kb on + strand, within DDA3937_RS01180 at 270.289 kb on + strand, within DDA3937_RS01180 at 270.289 kb on + strand, within DDA3937_RS01180 at 270.290 kb on - strand, within DDA3937_RS01180 at 270.290 kb on - strand, within DDA3937_RS01180 at 270.292 kb on + strand, within DDA3937_RS01180 at 270.292 kb on + strand, within DDA3937_RS01180 at 270.292 kb on + strand, within DDA3937_RS01180 at 270.292 kb on + strand, within DDA3937_RS01180 at 270.292 kb on + strand, within DDA3937_RS01180 at 270.293 kb on - strand, within DDA3937_RS01180 at 270.293 kb on - strand, within DDA3937_RS01180 at 270.293 kb on - strand, within DDA3937_RS01180 at 270.293 kb on - strand, within DDA3937_RS01180 at 270.293 kb on - strand, within DDA3937_RS01180 at 270.293 kb on - strand, within DDA3937_RS01180 at 270.293 kb on - strand, within DDA3937_RS01180 at 270.343 kb on + strand, within DDA3937_RS01180 at 270.343 kb on + strand, within DDA3937_RS01180 at 270.344 kb on - strand, within DDA3937_RS01180 at 270.344 kb on - strand, within DDA3937_RS01180 at 270.344 kb on - strand, within DDA3937_RS01180 at 270.344 kb on - strand, within DDA3937_RS01180 at 270.375 kb on + strand at 270.375 kb on + strand at 270.376 kb on - strand at 270.409 kb on + strand at 270.409 kb on + strand at 270.409 kb on + strand at 270.409 kb on + strand at 270.430 kb on + strand at 270.430 kb on + strand at 270.431 kb on - strand at 270.431 kb on - strand at 270.436 kb on + strand at 270.437 kb on - strand at 270.442 kb on + strand at 270.448 kb on + strand at 270.448 kb on + strand at 270.454 kb on + strand at 270.454 kb on + strand at 270.454 kb on + strand at 270.454 kb on + strand at 270.455 kb on - strand at 270.474 kb on - strand at 270.538 kb on + strand at 270.538 kb on + strand at 270.538 kb on + strand at 270.539 kb on - strand at 270.791 kb on - strand, within DDA3937_RS01185 at 270.816 kb on + strand, within DDA3937_RS01185 at 270.816 kb on + strand, within DDA3937_RS01185 at 270.817 kb on - strand, within DDA3937_RS01185 at 270.859 kb on + strand, within DDA3937_RS01185 at 270.859 kb on + strand, within DDA3937_RS01185 at 270.859 kb on + strand, within DDA3937_RS01185 at 270.860 kb on - strand, within DDA3937_RS01185 at 270.860 kb on - strand, within DDA3937_RS01185 at 270.863 kb on - strand, within DDA3937_RS01185 at 270.952 kb on + strand, within DDA3937_RS01185 at 270.952 kb on + strand, within DDA3937_RS01185 at 270.952 kb on + strand, within DDA3937_RS01185 at 270.952 kb on + strand, within DDA3937_RS01185 at 270.952 kb on + strand, within DDA3937_RS01185 at 270.952 kb on + strand, within DDA3937_RS01185 at 270.952 kb on + strand, within DDA3937_RS01185 at 270.952 kb on + strand, within DDA3937_RS01185 at 270.953 kb on - strand, within DDA3937_RS01185 at 270.953 kb on - strand, within DDA3937_RS01185 at 270.953 kb on - strand, within DDA3937_RS01185 at 270.953 kb on - strand, within DDA3937_RS01185 at 270.953 kb on - strand, within DDA3937_RS01185 at 270.953 kb on - strand, within DDA3937_RS01185 at 270.953 kb on - strand, within DDA3937_RS01185 at 270.953 kb on - strand, within DDA3937_RS01185 at 270.953 kb on - strand, within DDA3937_RS01185 at 271.054 kb on + strand, within DDA3937_RS01185 at 271.054 kb on + strand, within DDA3937_RS01185 at 271.054 kb on + strand, within DDA3937_RS01185 at 271.055 kb on - strand, within DDA3937_RS01185 at 271.174 kb on + strand, within DDA3937_RS01185 at 271.238 kb on + strand at 271.238 kb on + strand at 271.238 kb on + strand at 271.239 kb on - strand at 271.239 kb on - strand at 271.241 kb on + strand at 271.241 kb on + strand at 271.242 kb on - strand at 271.242 kb on - strand at 271.307 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 269,616 + +0.8 269,616 + -1.1 269,617 - -0.8 269,617 - -0.6 269,623 - -0.6 269,641 - -0.2 269,676 + -1.2 269,769 + -0.5 269,769 + -0.1 269,769 + +1.1 269,771 + -1.2 269,771 + -2.7 269,771 + -1.4 269,771 + -1.1 269,771 + -0.5 269,771 + -2.4 269,771 + -3.1 269,772 - -0.5 269,772 - -3.0 269,772 - -0.6 269,772 - +0.4 269,772 - -2.9 269,775 + +2.2 269,775 + +0.1 269,775 + -2.2 269,776 - -2.2 269,776 - +0.9 269,776 - -1.7 269,852 + -2.1 269,902 + -2.1 269,903 - -0.9 269,918 + +0.0 269,918 + +1.1 269,919 - -2.6 269,919 - -0.8 270,076 + DDA3937_RS01180 0.30 +1.7 270,076 + DDA3937_RS01180 0.30 +0.7 270,076 + DDA3937_RS01180 0.30 -0.8 270,077 - DDA3937_RS01180 0.30 +1.1 270,077 - DDA3937_RS01180 0.30 -0.6 270,080 + DDA3937_RS01180 0.31 -1.6 270,184 + DDA3937_RS01180 0.54 -3.9 270,184 + DDA3937_RS01180 0.54 -0.5 270,184 + DDA3937_RS01180 0.54 -0.2 270,184 + DDA3937_RS01180 0.54 +0.1 270,185 - DDA3937_RS01180 0.54 -3.4 270,211 + DDA3937_RS01180 0.60 +0.4 270,211 + -0.5 270,211 + DDA3937_RS01180 0.60 -1.2 270,211 + DDA3937_RS01180 0.60 -0.7 270,211 + DDA3937_RS01180 0.60 -1.8 270,211 + DDA3937_RS01180 0.60 -0.9 270,212 - DDA3937_RS01180 0.60 -1.1 270,259 - DDA3937_RS01180 0.71 -2.2 270,289 + DDA3937_RS01180 0.78 -0.7 270,289 + DDA3937_RS01180 0.78 -0.7 270,289 + DDA3937_RS01180 0.78 +0.2 270,289 + DDA3937_RS01180 0.78 -1.4 270,290 - DDA3937_RS01180 0.78 -1.1 270,290 - DDA3937_RS01180 0.78 -0.5 270,292 + DDA3937_RS01180 0.78 -0.7 270,292 + DDA3937_RS01180 0.78 +0.5 270,292 + DDA3937_RS01180 0.78 -0.7 270,292 + DDA3937_RS01180 0.78 +0.8 270,292 + DDA3937_RS01180 0.78 +3.2 270,293 - DDA3937_RS01180 0.78 -0.9 270,293 - DDA3937_RS01180 0.78 -0.9 270,293 - DDA3937_RS01180 0.78 -2.2 270,293 - DDA3937_RS01180 0.78 -2.0 270,293 - DDA3937_RS01180 0.78 -0.7 270,293 - DDA3937_RS01180 0.78 -0.4 270,293 - DDA3937_RS01180 0.78 -0.9 270,343 + DDA3937_RS01180 0.90 -2.4 270,343 + DDA3937_RS01180 0.90 -1.4 270,344 - DDA3937_RS01180 0.90 +1.1 270,344 - DDA3937_RS01180 0.90 -1.8 270,344 - DDA3937_RS01180 0.90 +0.0 270,344 - DDA3937_RS01180 0.90 +1.2 270,375 + -2.7 270,375 + -1.1 270,376 - -0.2 270,409 + +1.1 270,409 + +0.1 270,409 + +0.6 270,409 + -1.9 270,430 + -1.0 270,430 + -2.0 270,431 - +0.9 270,431 - +0.9 270,436 + -1.7 270,437 - -0.4 270,442 + -0.9 270,448 + +0.1 270,448 + -2.2 270,454 + -1.7 270,454 + -0.5 270,454 + +0.1 270,454 + -2.0 270,455 - -0.1 270,474 - -0.2 270,538 + +1.2 270,538 + +0.1 270,538 + -0.0 270,539 - -0.0 270,791 - DDA3937_RS01185 0.39 +0.1 270,816 + DDA3937_RS01185 0.42 -1.7 270,816 + DDA3937_RS01185 0.42 -1.7 270,817 - DDA3937_RS01185 0.42 -0.9 270,859 + DDA3937_RS01185 0.47 -3.3 270,859 + DDA3937_RS01185 0.47 -2.0 270,859 + DDA3937_RS01185 0.47 +2.0 270,860 - DDA3937_RS01185 0.47 -1.4 270,860 - DDA3937_RS01185 0.47 +0.5 270,863 - DDA3937_RS01185 0.48 +1.1 270,952 + DDA3937_RS01185 0.59 -0.7 270,952 + DDA3937_RS01185 0.59 +1.8 270,952 + DDA3937_RS01185 0.59 +0.5 270,952 + DDA3937_RS01185 0.59 -0.7 270,952 + DDA3937_RS01185 0.59 -0.6 270,952 + DDA3937_RS01185 0.59 +0.5 270,952 + DDA3937_RS01185 0.59 +0.5 270,952 + DDA3937_RS01185 0.59 +0.5 270,953 - DDA3937_RS01185 0.59 -0.8 270,953 - DDA3937_RS01185 0.59 -0.9 270,953 - DDA3937_RS01185 0.59 +1.9 270,953 - DDA3937_RS01185 0.59 -0.2 270,953 - DDA3937_RS01185 0.59 +2.1 270,953 - DDA3937_RS01185 0.59 +0.1 270,953 - DDA3937_RS01185 0.59 +0.4 270,953 - DDA3937_RS01185 0.59 -1.3 270,953 - DDA3937_RS01185 0.59 -0.3 271,054 + DDA3937_RS01185 0.72 +1.0 271,054 + DDA3937_RS01185 0.72 -0.3 271,054 + DDA3937_RS01185 0.72 +1.8 271,055 - DDA3937_RS01185 0.73 +1.6 271,174 + DDA3937_RS01185 0.88 -2.6 271,238 + -0.7 271,238 + +0.4 271,238 + -3.2 271,239 - -1.2 271,239 - -0.3 271,241 + +1.3 271,241 + -0.2 271,242 - +0.7 271,242 - -1.7 271,307 + -1.2
Or see this region's nucleotide sequence