Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00735 and DDA3937_RS00740 overlap by 4 nucleotides DDA3937_RS00740 and DDA3937_RS00745 are separated by 205 nucleotides
DDA3937_RS00735: DDA3937_RS00735 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 174,312 to 175,388
_RS00735
DDA3937_RS00740: DDA3937_RS00740 - glycerophosphodiester phosphodiesterase, at 175,385 to 176,134
_RS00740
DDA3937_RS00745: DDA3937_RS00745 - AEC family transporter, at 176,340 to 177,296
_RS00745
Position (kb) 175
176
177 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 174.443 kb on + strand, within DDA3937_RS00735 at 174.443 kb on + strand, within DDA3937_RS00735 at 174.443 kb on + strand, within DDA3937_RS00735 at 174.444 kb on - strand, within DDA3937_RS00735 at 174.444 kb on - strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.496 kb on - strand, within DDA3937_RS00735 at 174.496 kb on - strand, within DDA3937_RS00735 at 174.496 kb on - strand, within DDA3937_RS00735 at 174.496 kb on - strand, within DDA3937_RS00735 at 174.496 kb on - strand, within DDA3937_RS00735 at 174.496 kb on - strand, within DDA3937_RS00735 at 174.496 kb on - strand, within DDA3937_RS00735 at 174.496 kb on - strand, within DDA3937_RS00735 at 174.496 kb on - strand, within DDA3937_RS00735 at 174.496 kb on - strand, within DDA3937_RS00735 at 174.496 kb on - strand, within DDA3937_RS00735 at 174.496 kb on - strand, within DDA3937_RS00735 at 174.496 kb on - strand, within DDA3937_RS00735 at 174.565 kb on - strand, within DDA3937_RS00735 at 174.565 kb on - strand, within DDA3937_RS00735 at 174.592 kb on - strand, within DDA3937_RS00735 at 174.606 kb on + strand, within DDA3937_RS00735 at 174.879 kb on + strand, within DDA3937_RS00735 at 174.879 kb on + strand, within DDA3937_RS00735 at 174.880 kb on - strand, within DDA3937_RS00735 at 174.978 kb on + strand, within DDA3937_RS00735 at 174.979 kb on - strand, within DDA3937_RS00735 at 175.349 kb on + strand at 175.349 kb on + strand at 175.350 kb on - strand at 175.350 kb on - strand at 175.350 kb on - strand at 175.351 kb on + strand at 175.351 kb on + strand at 175.351 kb on + strand at 175.352 kb on - strand at 175.352 kb on - strand at 175.352 kb on - strand at 175.706 kb on + strand, within DDA3937_RS00740 at 175.706 kb on + strand, within DDA3937_RS00740 at 175.723 kb on + strand, within DDA3937_RS00740 at 175.724 kb on - strand, within DDA3937_RS00740 at 175.960 kb on + strand, within DDA3937_RS00740 at 175.960 kb on + strand, within DDA3937_RS00740 at 176.027 kb on + strand, within DDA3937_RS00740 at 176.027 kb on + strand, within DDA3937_RS00740 at 176.027 kb on + strand, within DDA3937_RS00740 at 176.027 kb on + strand, within DDA3937_RS00740 at 176.028 kb on - strand, within DDA3937_RS00740 at 176.029 kb on + strand, within DDA3937_RS00740 at 176.030 kb on - strand, within DDA3937_RS00740 at 176.030 kb on - strand, within DDA3937_RS00740 at 176.122 kb on + strand at 176.123 kb on - strand at 176.138 kb on + strand at 176.138 kb on + strand at 176.138 kb on + strand at 176.144 kb on + strand at 176.144 kb on + strand at 176.148 kb on + strand at 176.235 kb on - strand at 176.329 kb on - strand at 176.510 kb on + strand, within DDA3937_RS00745 at 176.511 kb on - strand, within DDA3937_RS00745 at 176.511 kb on - strand, within DDA3937_RS00745 at 176.582 kb on + strand, within DDA3937_RS00745 at 176.798 kb on - strand, within DDA3937_RS00745 at 176.901 kb on + strand, within DDA3937_RS00745 at 176.902 kb on - strand, within DDA3937_RS00745 at 177.018 kb on - strand, within DDA3937_RS00745 at 177.018 kb on - strand, within DDA3937_RS00745 at 177.048 kb on - strand, within DDA3937_RS00745
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 174,443 + DDA3937_RS00735 0.12 +1.9 174,443 + DDA3937_RS00735 0.12 -0.1 174,443 + DDA3937_RS00735 0.12 +1.1 174,444 - DDA3937_RS00735 0.12 +0.1 174,444 - DDA3937_RS00735 0.12 +1.2 174,495 + DDA3937_RS00735 0.17 +0.5 174,495 + +0.5 174,495 + DDA3937_RS00735 0.17 -0.8 174,495 + DDA3937_RS00735 0.17 -0.5 174,495 + DDA3937_RS00735 0.17 -0.5 174,495 + DDA3937_RS00735 0.17 +0.8 174,495 + DDA3937_RS00735 0.17 +0.7 174,495 + DDA3937_RS00735 0.17 +2.6 174,495 + DDA3937_RS00735 0.17 -0.1 174,495 + DDA3937_RS00735 0.17 +2.1 174,495 + DDA3937_RS00735 0.17 +1.1 174,495 + DDA3937_RS00735 0.17 -2.2 174,495 + DDA3937_RS00735 0.17 -1.9 174,495 + DDA3937_RS00735 0.17 -2.2 174,495 + DDA3937_RS00735 0.17 +1.1 174,495 + DDA3937_RS00735 0.17 -0.6 174,495 + DDA3937_RS00735 0.17 -1.0 174,495 + DDA3937_RS00735 0.17 -1.1 174,495 + DDA3937_RS00735 0.17 -0.5 174,495 + DDA3937_RS00735 0.17 -2.2 174,495 + DDA3937_RS00735 0.17 +2.2 174,495 + DDA3937_RS00735 0.17 +0.5 174,496 - DDA3937_RS00735 0.17 +1.7 174,496 - DDA3937_RS00735 0.17 -0.6 174,496 - DDA3937_RS00735 0.17 -1.4 174,496 - DDA3937_RS00735 0.17 -0.4 174,496 - DDA3937_RS00735 0.17 -0.3 174,496 - DDA3937_RS00735 0.17 -3.0 174,496 - DDA3937_RS00735 0.17 -0.0 174,496 - DDA3937_RS00735 0.17 +1.7 174,496 - DDA3937_RS00735 0.17 +0.1 174,496 - DDA3937_RS00735 0.17 -3.1 174,496 - DDA3937_RS00735 0.17 -1.5 174,496 - DDA3937_RS00735 0.17 -1.6 174,496 - DDA3937_RS00735 0.17 -0.2 174,565 - DDA3937_RS00735 0.23 +0.9 174,565 - DDA3937_RS00735 0.23 -1.4 174,592 - DDA3937_RS00735 0.26 -0.8 174,606 + DDA3937_RS00735 0.27 +0.7 174,879 + DDA3937_RS00735 0.53 -0.9 174,879 + DDA3937_RS00735 0.53 -0.2 174,880 - DDA3937_RS00735 0.53 +0.1 174,978 + DDA3937_RS00735 0.62 +0.3 174,979 - DDA3937_RS00735 0.62 +0.0 175,349 + -2.3 175,349 + -0.9 175,350 - -3.2 175,350 - +0.5 175,350 - +0.4 175,351 + -2.6 175,351 + -1.3 175,351 + -1.2 175,352 - -1.2 175,352 - -0.9 175,352 - -0.2 175,706 + DDA3937_RS00740 0.43 -1.2 175,706 + DDA3937_RS00740 0.43 -2.7 175,723 + DDA3937_RS00740 0.45 -3.7 175,724 - DDA3937_RS00740 0.45 +0.7 175,960 + DDA3937_RS00740 0.77 -0.4 175,960 + DDA3937_RS00740 0.77 -3.3 176,027 + DDA3937_RS00740 0.86 -0.7 176,027 + DDA3937_RS00740 0.86 +0.8 176,027 + DDA3937_RS00740 0.86 +0.8 176,027 + DDA3937_RS00740 0.86 +1.4 176,028 - DDA3937_RS00740 0.86 +0.2 176,029 + DDA3937_RS00740 0.86 +1.6 176,030 - DDA3937_RS00740 0.86 +0.3 176,030 - DDA3937_RS00740 0.86 +1.3 176,122 + +0.7 176,123 - -1.1 176,138 + -2.0 176,138 + -1.6 176,138 + -1.5 176,144 + -0.2 176,144 + -0.1 176,148 + +0.8 176,235 - +0.3 176,329 - -1.4 176,510 + DDA3937_RS00745 0.18 +0.8 176,511 - DDA3937_RS00745 0.18 -0.4 176,511 - DDA3937_RS00745 0.18 +1.4 176,582 + DDA3937_RS00745 0.25 +2.6 176,798 - DDA3937_RS00745 0.48 +1.1 176,901 + DDA3937_RS00745 0.59 +0.6 176,902 - DDA3937_RS00745 0.59 -1.1 177,018 - DDA3937_RS00745 0.71 -2.2 177,018 - DDA3937_RS00745 0.71 -0.1 177,048 - DDA3937_RS00745 0.74 -1.4
Or see this region's nucleotide sequence