Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00725 and DDA3937_RS00730 are separated by 41 nucleotides DDA3937_RS00730 and DDA3937_RS00735 are separated by 6 nucleotides DDA3937_RS00735 and DDA3937_RS00740 overlap by 4 nucleotides DDA3937_RS00740 and DDA3937_RS00745 are separated by 205 nucleotides
DDA3937_RS00725: DDA3937_RS00725 - sn-glycerol-3-phosphate ABC transporter permease UgpA, at 172,528 to 173,415
_RS00725
DDA3937_RS00730: DDA3937_RS00730 - sn-glycerol-3-phosphate ABC transporter permease UgpE, at 173,457 to 174,305
_RS00730
DDA3937_RS00735: DDA3937_RS00735 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 174,312 to 175,388
_RS00735
DDA3937_RS00740: DDA3937_RS00740 - glycerophosphodiester phosphodiesterase, at 175,385 to 176,134
_RS00740
DDA3937_RS00745: DDA3937_RS00745 - AEC family transporter, at 176,340 to 177,296
_RS00745
Position (kb) 174
175
176 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 173.373 kb on - strand at 173.397 kb on + strand at 173.397 kb on + strand at 173.398 kb on - strand at 173.398 kb on - strand at 173.398 kb on - strand at 173.407 kb on + strand at 173.407 kb on + strand at 173.407 kb on + strand at 173.407 kb on + strand at 173.407 kb on + strand at 173.408 kb on - strand at 173.408 kb on - strand at 173.417 kb on + strand at 173.417 kb on + strand at 173.418 kb on - strand at 173.418 kb on - strand at 173.418 kb on - strand at 173.483 kb on + strand at 173.483 kb on + strand at 173.483 kb on + strand at 173.483 kb on + strand at 173.484 kb on - strand at 173.485 kb on + strand at 173.486 kb on - strand at 173.486 kb on - strand at 173.486 kb on - strand at 173.538 kb on + strand at 173.538 kb on + strand at 173.538 kb on + strand at 173.538 kb on + strand at 173.538 kb on + strand at 173.539 kb on - strand at 173.634 kb on + strand, within DDA3937_RS00730 at 173.634 kb on + strand, within DDA3937_RS00730 at 173.634 kb on + strand, within DDA3937_RS00730 at 173.634 kb on + strand, within DDA3937_RS00730 at 173.634 kb on + strand, within DDA3937_RS00730 at 173.634 kb on + strand, within DDA3937_RS00730 at 173.634 kb on + strand, within DDA3937_RS00730 at 173.634 kb on + strand, within DDA3937_RS00730 at 173.634 kb on + strand, within DDA3937_RS00730 at 173.634 kb on + strand, within DDA3937_RS00730 at 173.634 kb on + strand, within DDA3937_RS00730 at 173.634 kb on + strand, within DDA3937_RS00730 at 173.634 kb on + strand, within DDA3937_RS00730 at 173.634 kb on + strand, within DDA3937_RS00730 at 173.634 kb on + strand, within DDA3937_RS00730 at 173.634 kb on + strand, within DDA3937_RS00730 at 173.634 kb on + strand, within DDA3937_RS00730 at 173.635 kb on - strand, within DDA3937_RS00730 at 173.635 kb on - strand, within DDA3937_RS00730 at 173.635 kb on - strand, within DDA3937_RS00730 at 173.635 kb on - strand, within DDA3937_RS00730 at 173.635 kb on - strand, within DDA3937_RS00730 at 173.635 kb on - strand, within DDA3937_RS00730 at 173.635 kb on - strand, within DDA3937_RS00730 at 173.635 kb on - strand, within DDA3937_RS00730 at 173.635 kb on - strand, within DDA3937_RS00730 at 173.653 kb on + strand, within DDA3937_RS00730 at 173.769 kb on + strand, within DDA3937_RS00730 at 173.770 kb on - strand, within DDA3937_RS00730 at 173.892 kb on + strand, within DDA3937_RS00730 at 173.892 kb on + strand, within DDA3937_RS00730 at 173.892 kb on + strand, within DDA3937_RS00730 at 173.892 kb on + strand, within DDA3937_RS00730 at 173.892 kb on + strand at 173.892 kb on + strand, within DDA3937_RS00730 at 173.892 kb on + strand, within DDA3937_RS00730 at 173.892 kb on + strand, within DDA3937_RS00730 at 173.892 kb on + strand, within DDA3937_RS00730 at 173.892 kb on + strand, within DDA3937_RS00730 at 173.892 kb on + strand, within DDA3937_RS00730 at 173.892 kb on + strand, within DDA3937_RS00730 at 173.892 kb on + strand, within DDA3937_RS00730 at 173.892 kb on + strand, within DDA3937_RS00730 at 173.892 kb on + strand, within DDA3937_RS00730 at 173.892 kb on + strand, within DDA3937_RS00730 at 173.893 kb on - strand, within DDA3937_RS00730 at 173.893 kb on - strand, within DDA3937_RS00730 at 173.893 kb on - strand, within DDA3937_RS00730 at 173.893 kb on - strand, within DDA3937_RS00730 at 173.893 kb on - strand, within DDA3937_RS00730 at 173.893 kb on - strand, within DDA3937_RS00730 at 173.893 kb on - strand, within DDA3937_RS00730 at 173.893 kb on - strand, within DDA3937_RS00730 at 173.933 kb on + strand, within DDA3937_RS00730 at 173.933 kb on + strand, within DDA3937_RS00730 at 174.083 kb on + strand, within DDA3937_RS00730 at 174.084 kb on - strand, within DDA3937_RS00730 at 174.084 kb on - strand, within DDA3937_RS00730 at 174.087 kb on + strand, within DDA3937_RS00730 at 174.087 kb on + strand, within DDA3937_RS00730 at 174.088 kb on - strand, within DDA3937_RS00730 at 174.088 kb on - strand, within DDA3937_RS00730 at 174.088 kb on - strand, within DDA3937_RS00730 at 174.102 kb on + strand, within DDA3937_RS00730 at 174.102 kb on + strand, within DDA3937_RS00730 at 174.102 kb on + strand, within DDA3937_RS00730 at 174.103 kb on - strand, within DDA3937_RS00730 at 174.103 kb on - strand, within DDA3937_RS00730 at 174.294 kb on - strand at 174.294 kb on - strand at 174.303 kb on + strand at 174.311 kb on + strand at 174.312 kb on - strand at 174.312 kb on - strand at 174.312 kb on - strand at 174.323 kb on - strand at 174.348 kb on + strand at 174.348 kb on + strand at 174.349 kb on - strand at 174.443 kb on + strand, within DDA3937_RS00735 at 174.443 kb on + strand, within DDA3937_RS00735 at 174.443 kb on + strand, within DDA3937_RS00735 at 174.444 kb on - strand, within DDA3937_RS00735 at 174.444 kb on - strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.496 kb on - strand, within DDA3937_RS00735 at 174.496 kb on - strand, within DDA3937_RS00735 at 174.496 kb on - strand, within DDA3937_RS00735 at 174.496 kb on - strand, within DDA3937_RS00735 at 174.496 kb on - strand, within DDA3937_RS00735 at 174.496 kb on - strand, within DDA3937_RS00735 at 174.496 kb on - strand, within DDA3937_RS00735 at 174.496 kb on - strand, within DDA3937_RS00735 at 174.496 kb on - strand, within DDA3937_RS00735 at 174.496 kb on - strand, within DDA3937_RS00735 at 174.496 kb on - strand, within DDA3937_RS00735 at 174.496 kb on - strand, within DDA3937_RS00735 at 174.496 kb on - strand, within DDA3937_RS00735 at 174.565 kb on - strand, within DDA3937_RS00735 at 174.565 kb on - strand, within DDA3937_RS00735 at 174.592 kb on - strand, within DDA3937_RS00735 at 174.606 kb on + strand, within DDA3937_RS00735 at 174.879 kb on + strand, within DDA3937_RS00735 at 174.879 kb on + strand, within DDA3937_RS00735 at 174.880 kb on - strand, within DDA3937_RS00735 at 174.978 kb on + strand, within DDA3937_RS00735 at 174.979 kb on - strand, within DDA3937_RS00735 at 175.349 kb on + strand at 175.349 kb on + strand at 175.350 kb on - strand at 175.350 kb on - strand at 175.350 kb on - strand at 175.351 kb on + strand at 175.351 kb on + strand at 175.351 kb on + strand at 175.352 kb on - strand at 175.352 kb on - strand at 175.352 kb on - strand at 175.706 kb on + strand, within DDA3937_RS00740 at 175.706 kb on + strand, within DDA3937_RS00740 at 175.723 kb on + strand, within DDA3937_RS00740 at 175.724 kb on - strand, within DDA3937_RS00740 at 175.960 kb on + strand, within DDA3937_RS00740 at 175.960 kb on + strand, within DDA3937_RS00740 at 176.027 kb on + strand, within DDA3937_RS00740 at 176.027 kb on + strand, within DDA3937_RS00740 at 176.027 kb on + strand, within DDA3937_RS00740 at 176.027 kb on + strand, within DDA3937_RS00740 at 176.028 kb on - strand, within DDA3937_RS00740 at 176.029 kb on + strand, within DDA3937_RS00740 at 176.030 kb on - strand, within DDA3937_RS00740 at 176.030 kb on - strand, within DDA3937_RS00740 at 176.122 kb on + strand at 176.123 kb on - strand at 176.138 kb on + strand at 176.138 kb on + strand at 176.138 kb on + strand at 176.144 kb on + strand at 176.144 kb on + strand at 176.148 kb on + strand at 176.235 kb on - strand at 176.329 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 173,373 - +1.2 173,397 + -1.9 173,397 + -1.8 173,398 - -1.3 173,398 - -0.2 173,398 - -0.5 173,407 + +2.6 173,407 + -0.2 173,407 + -0.1 173,407 + +0.0 173,407 + +0.5 173,408 - -1.1 173,408 - -2.7 173,417 + -0.9 173,417 + -1.1 173,418 - -2.8 173,418 - -1.5 173,418 - -1.1 173,483 + -0.6 173,483 + +0.5 173,483 + +0.5 173,483 + -0.5 173,484 - -3.0 173,485 + +1.6 173,486 - +0.5 173,486 - +0.0 173,486 - -0.3 173,538 + +0.5 173,538 + -2.7 173,538 + -0.6 173,538 + -2.7 173,538 + -0.5 173,539 - -2.3 173,634 + DDA3937_RS00730 0.21 -0.0 173,634 + DDA3937_RS00730 0.21 -2.0 173,634 + DDA3937_RS00730 0.21 +1.2 173,634 + DDA3937_RS00730 0.21 +0.1 173,634 + DDA3937_RS00730 0.21 -1.4 173,634 + DDA3937_RS00730 0.21 -0.7 173,634 + DDA3937_RS00730 0.21 -0.4 173,634 + DDA3937_RS00730 0.21 -1.2 173,634 + DDA3937_RS00730 0.21 -2.0 173,634 + DDA3937_RS00730 0.21 +0.1 173,634 + DDA3937_RS00730 0.21 -0.9 173,634 + DDA3937_RS00730 0.21 +0.8 173,634 + DDA3937_RS00730 0.21 -1.9 173,634 + DDA3937_RS00730 0.21 -1.2 173,634 + DDA3937_RS00730 0.21 -0.5 173,634 + DDA3937_RS00730 0.21 +0.5 173,634 + DDA3937_RS00730 0.21 -1.7 173,635 - DDA3937_RS00730 0.21 -2.5 173,635 - DDA3937_RS00730 0.21 +0.5 173,635 - DDA3937_RS00730 0.21 -0.8 173,635 - DDA3937_RS00730 0.21 +1.1 173,635 - DDA3937_RS00730 0.21 -0.4 173,635 - DDA3937_RS00730 0.21 -0.8 173,635 - DDA3937_RS00730 0.21 -1.1 173,635 - DDA3937_RS00730 0.21 +1.0 173,635 - DDA3937_RS00730 0.21 -0.1 173,653 + DDA3937_RS00730 0.23 +0.2 173,769 + DDA3937_RS00730 0.37 -0.8 173,770 - DDA3937_RS00730 0.37 -0.3 173,892 + DDA3937_RS00730 0.51 -2.7 173,892 + DDA3937_RS00730 0.51 +0.5 173,892 + DDA3937_RS00730 0.51 -1.2 173,892 + DDA3937_RS00730 0.51 +0.3 173,892 + +0.1 173,892 + DDA3937_RS00730 0.51 +0.1 173,892 + DDA3937_RS00730 0.51 -1.6 173,892 + DDA3937_RS00730 0.51 -1.4 173,892 + DDA3937_RS00730 0.51 +1.4 173,892 + DDA3937_RS00730 0.51 -1.1 173,892 + DDA3937_RS00730 0.51 -0.5 173,892 + DDA3937_RS00730 0.51 +0.9 173,892 + DDA3937_RS00730 0.51 +0.9 173,892 + DDA3937_RS00730 0.51 -1.2 173,892 + DDA3937_RS00730 0.51 -1.4 173,892 + DDA3937_RS00730 0.51 +1.4 173,893 - DDA3937_RS00730 0.51 +0.7 173,893 - DDA3937_RS00730 0.51 -1.9 173,893 - DDA3937_RS00730 0.51 +2.7 173,893 - DDA3937_RS00730 0.51 -1.9 173,893 - DDA3937_RS00730 0.51 -0.3 173,893 - DDA3937_RS00730 0.51 +0.5 173,893 - DDA3937_RS00730 0.51 -0.2 173,893 - DDA3937_RS00730 0.51 +1.3 173,933 + DDA3937_RS00730 0.56 -1.5 173,933 + DDA3937_RS00730 0.56 -1.9 174,083 + DDA3937_RS00730 0.74 -1.7 174,084 - DDA3937_RS00730 0.74 -0.3 174,084 - DDA3937_RS00730 0.74 -1.8 174,087 + DDA3937_RS00730 0.74 -1.0 174,087 + DDA3937_RS00730 0.74 -0.6 174,088 - DDA3937_RS00730 0.74 -0.4 174,088 - DDA3937_RS00730 0.74 -0.6 174,088 - DDA3937_RS00730 0.74 -1.0 174,102 + DDA3937_RS00730 0.76 +0.7 174,102 + DDA3937_RS00730 0.76 -2.5 174,102 + DDA3937_RS00730 0.76 -0.2 174,103 - DDA3937_RS00730 0.76 -0.2 174,103 - DDA3937_RS00730 0.76 +0.4 174,294 - -0.1 174,294 - -1.4 174,303 + -0.5 174,311 + +1.3 174,312 - -1.4 174,312 - -1.2 174,312 - -2.1 174,323 - -0.5 174,348 + -0.7 174,348 + -1.5 174,349 - -2.9 174,443 + DDA3937_RS00735 0.12 +1.9 174,443 + DDA3937_RS00735 0.12 -0.1 174,443 + DDA3937_RS00735 0.12 +1.1 174,444 - DDA3937_RS00735 0.12 +0.1 174,444 - DDA3937_RS00735 0.12 +1.2 174,495 + DDA3937_RS00735 0.17 +0.5 174,495 + +0.5 174,495 + DDA3937_RS00735 0.17 -0.8 174,495 + DDA3937_RS00735 0.17 -0.5 174,495 + DDA3937_RS00735 0.17 -0.5 174,495 + DDA3937_RS00735 0.17 +0.8 174,495 + DDA3937_RS00735 0.17 +0.7 174,495 + DDA3937_RS00735 0.17 +2.6 174,495 + DDA3937_RS00735 0.17 -0.1 174,495 + DDA3937_RS00735 0.17 +2.1 174,495 + DDA3937_RS00735 0.17 +1.1 174,495 + DDA3937_RS00735 0.17 -2.2 174,495 + DDA3937_RS00735 0.17 -1.9 174,495 + DDA3937_RS00735 0.17 -2.2 174,495 + DDA3937_RS00735 0.17 +1.1 174,495 + DDA3937_RS00735 0.17 -0.6 174,495 + DDA3937_RS00735 0.17 -1.0 174,495 + DDA3937_RS00735 0.17 -1.1 174,495 + DDA3937_RS00735 0.17 -0.5 174,495 + DDA3937_RS00735 0.17 -2.2 174,495 + DDA3937_RS00735 0.17 +2.2 174,495 + DDA3937_RS00735 0.17 +0.5 174,496 - DDA3937_RS00735 0.17 +1.7 174,496 - DDA3937_RS00735 0.17 -0.6 174,496 - DDA3937_RS00735 0.17 -1.4 174,496 - DDA3937_RS00735 0.17 -0.4 174,496 - DDA3937_RS00735 0.17 -0.3 174,496 - DDA3937_RS00735 0.17 -3.0 174,496 - DDA3937_RS00735 0.17 -0.0 174,496 - DDA3937_RS00735 0.17 +1.7 174,496 - DDA3937_RS00735 0.17 +0.1 174,496 - DDA3937_RS00735 0.17 -3.1 174,496 - DDA3937_RS00735 0.17 -1.5 174,496 - DDA3937_RS00735 0.17 -1.6 174,496 - DDA3937_RS00735 0.17 -0.2 174,565 - DDA3937_RS00735 0.23 +0.9 174,565 - DDA3937_RS00735 0.23 -1.4 174,592 - DDA3937_RS00735 0.26 -0.8 174,606 + DDA3937_RS00735 0.27 +0.7 174,879 + DDA3937_RS00735 0.53 -0.9 174,879 + DDA3937_RS00735 0.53 -0.2 174,880 - DDA3937_RS00735 0.53 +0.1 174,978 + DDA3937_RS00735 0.62 +0.3 174,979 - DDA3937_RS00735 0.62 +0.0 175,349 + -2.3 175,349 + -0.9 175,350 - -3.2 175,350 - +0.5 175,350 - +0.4 175,351 + -2.6 175,351 + -1.3 175,351 + -1.2 175,352 - -1.2 175,352 - -0.9 175,352 - -0.2 175,706 + DDA3937_RS00740 0.43 -1.2 175,706 + DDA3937_RS00740 0.43 -2.7 175,723 + DDA3937_RS00740 0.45 -3.7 175,724 - DDA3937_RS00740 0.45 +0.7 175,960 + DDA3937_RS00740 0.77 -0.4 175,960 + DDA3937_RS00740 0.77 -3.3 176,027 + DDA3937_RS00740 0.86 -0.7 176,027 + DDA3937_RS00740 0.86 +0.8 176,027 + DDA3937_RS00740 0.86 +0.8 176,027 + DDA3937_RS00740 0.86 +1.4 176,028 - DDA3937_RS00740 0.86 +0.2 176,029 + DDA3937_RS00740 0.86 +1.6 176,030 - DDA3937_RS00740 0.86 +0.3 176,030 - DDA3937_RS00740 0.86 +1.3 176,122 + +0.7 176,123 - -1.1 176,138 + -2.0 176,138 + -1.6 176,138 + -1.5 176,144 + -0.2 176,144 + -0.1 176,148 + +0.8 176,235 - +0.3 176,329 - -1.4
Or see this region's nucleotide sequence