Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00480

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
112,865	+				-3.1
112,865	+				-2.1
112,865	+				-0.2
112,865	+				-1.6
112,866	-				-2.1
112,867	+				-0.1
112,867	+				-0.1
112,868	-				-1.2
112,868	-				-0.3
112,868	-				-1.1
112,868	-				-0.0
112,868	-				-0.9
112,873	+				-1.5
112,874	-				-0.6
112,896	+				+0.0
112,897	-				+0.9
112,954	+				+0.6
112,962	-				-1.2
112,962	-				-1.5
113,195	+		DDA3937_RS00475	0.32	-0.0
113,196	-		DDA3937_RS00475	0.32	+0.9
113,215	+		DDA3937_RS00475	0.34	-2.1
113,561	+		DDA3937_RS00475	0.69	-0.2
113,561	+		DDA3937_RS00475	0.69	-0.1
113,561	+		DDA3937_RS00475	0.69	+0.1
113,562	-		DDA3937_RS00475	0.70	-0.7
113,562	-		DDA3937_RS00475	0.70	-1.4
113,562	-		DDA3937_RS00475	0.70	-1.4
113,624	+		DDA3937_RS00475	0.76	+0.5
113,624	+		DDA3937_RS00475	0.76	-0.4
113,624	+		DDA3937_RS00475	0.76	-0.7
113,625	-		DDA3937_RS00475	0.76	+0.1
113,625	-		DDA3937_RS00475	0.76	-0.0
113,625	-		DDA3937_RS00475	0.76	-1.5
113,625	-		DDA3937_RS00475	0.76	-0.3
113,711	+		DDA3937_RS00475	0.85	-0.1
113,712	-		DDA3937_RS00475	0.85	-1.5
113,824	+				-2.7
113,825	-				-1.6
113,825	-				+0.5
113,856	+				+0.5
113,857	-				-2.6
113,857	-				-1.4
113,890	+				+1.7
113,964	-		DDA3937_RS00480	0.11	-1.1
113,964	-		DDA3937_RS00480	0.11	-0.2
114,045	+		DDA3937_RS00480	0.19	+1.4
114,045	+		DDA3937_RS00480	0.19	-2.0
114,046	-		DDA3937_RS00480	0.19	-1.9
114,097	+		DDA3937_RS00480	0.24	+1.1
114,097	+		DDA3937_RS00480	0.24	-0.9
114,097	+		DDA3937_RS00480	0.24	-0.9
114,097	+		DDA3937_RS00480	0.24	-1.8
114,098	-		DDA3937_RS00480	0.24	-1.2
114,098	-		DDA3937_RS00480	0.24	-2.3
114,098	-		DDA3937_RS00480	0.24	-0.5
114,100	+		DDA3937_RS00480	0.24	-0.9
114,101	-		DDA3937_RS00480	0.24	-1.4
114,101	-		DDA3937_RS00480	0.24	-1.4
114,101	-		DDA3937_RS00480	0.24	-1.7
114,196	-		DDA3937_RS00480	0.34	+0.6
114,196	-				-0.2
114,322	+		DDA3937_RS00480	0.46	+0.4
114,322	+		DDA3937_RS00480	0.46	-0.7
114,323	-		DDA3937_RS00480	0.46	-0.5
114,323	-		DDA3937_RS00480	0.46	+1.9
114,366	+		DDA3937_RS00480	0.50	-0.8
114,503	-		DDA3937_RS00480	0.64	-0.7
114,565	+		DDA3937_RS00480	0.70	+1.0
114,565	+		DDA3937_RS00480	0.70	-0.2
114,565	+		DDA3937_RS00480	0.70	+1.5
114,565	+		DDA3937_RS00480	0.70	-2.0
114,565	+		DDA3937_RS00480	0.70	-0.6
114,565	+		DDA3937_RS00480	0.70	+0.5
114,566	-		DDA3937_RS00480	0.70	+1.1
114,566	-		DDA3937_RS00480	0.70	-0.9
114,566	-		DDA3937_RS00480	0.70	-1.0
114,628	+		DDA3937_RS00480	0.76	-2.6
114,629	-		DDA3937_RS00480	0.77	-2.8
114,629	-		DDA3937_RS00480	0.77	-2.5
114,857	+				+1.1
114,857	+				-1.7
114,857	+				-0.7
114,858	-				-3.2
114,874	+				-1.9
114,874	+				+0.1
114,874	+				+1.4
114,874	+				+0.4
114,878	+				-0.5
114,878	+				-3.0
114,878	+				-0.7
114,878	+				-0.2
114,878	+				+0.1
114,878	+				-0.4
114,878	+				-1.9
114,879	-				+0.8
114,879	-				+0.1
114,879	-				+0.8
114,879	-				-3.0
114,933	+				-1.2
114,933	+				+0.5
114,966	+				+0.5
114,967	-				-0.7
114,972	-				-0.2
114,972	-				+0.2
115,040	+		DDA3937_RS00485	0.13	-0.8
115,040	+		DDA3937_RS00485	0.13	-0.1
115,040	+		DDA3937_RS00485	0.13	-0.2
115,040	+		DDA3937_RS00485	0.13	-1.4
115,040	+		DDA3937_RS00485	0.13	-1.9
115,040	+		DDA3937_RS00485	0.13	-0.7
115,040	+		DDA3937_RS00485	0.13	+1.2
115,040	+		DDA3937_RS00485	0.13	-0.4
115,040	+		DDA3937_RS00485	0.13	+0.1
115,040	+		DDA3937_RS00485	0.13	-1.8
115,040	+		DDA3937_RS00485	0.13	-2.4
115,041	-		DDA3937_RS00485	0.13	-1.7
115,041	-		DDA3937_RS00485	0.13	-1.3
115,041	-		DDA3937_RS00485	0.13	+0.6
115,041	-		DDA3937_RS00485	0.13	+1.1
115,041	-		DDA3937_RS00485	0.13	-2.4
115,084	-		DDA3937_RS00485	0.21	-0.2
115,085	+		DDA3937_RS00485	0.22	-0.8
115,085	+		DDA3937_RS00485	0.22	-2.0
115,085	+		DDA3937_RS00485	0.22	-0.9
115,085	+		DDA3937_RS00485	0.22	-1.8
115,085	+		DDA3937_RS00485	0.22	-1.6
115,085	+		DDA3937_RS00485	0.22	+1.8
115,085	+		DDA3937_RS00485	0.22	-0.8
115,085	+		DDA3937_RS00485	0.22	-1.4
115,086	-		DDA3937_RS00485	0.22	-1.5
115,086	-		DDA3937_RS00485	0.22	-2.0
115,086	-		DDA3937_RS00485	0.22	-0.1
115,086	-		DDA3937_RS00485	0.22	-1.2
115,086	-		DDA3937_RS00485	0.22	-0.2
115,086	-		DDA3937_RS00485	0.22	-2.4
115,086	-		DDA3937_RS00485	0.22	+0.5
115,086	-		DDA3937_RS00485	0.22	+1.2
115,086	-		DDA3937_RS00485	0.22	-2.2
115,086	-		DDA3937_RS00485	0.22	+0.6
115,129	+		DDA3937_RS00485	0.30	-2.3
115,129	+		DDA3937_RS00485	0.30	-0.1
115,129	+		DDA3937_RS00485	0.30	-1.1
115,129	+		DDA3937_RS00485	0.30	-0.5
115,129	+		DDA3937_RS00485	0.30	-1.7
115,129	+		DDA3937_RS00485	0.30	-1.4
115,129	+		DDA3937_RS00485	0.30	-0.2
115,129	+		DDA3937_RS00485	0.30	+0.4
115,129	+		DDA3937_RS00485	0.30	-2.9
115,129	+		DDA3937_RS00485	0.30	-0.9
115,130	-		DDA3937_RS00485	0.30	+0.1
115,130	-		DDA3937_RS00485	0.30	-0.5
115,130	-		DDA3937_RS00485	0.30	+1.2
115,130	-		DDA3937_RS00485	0.30	-0.0
115,130	-		DDA3937_RS00485	0.30	+0.2
115,130	-		DDA3937_RS00485	0.30	-0.3
115,134	+		DDA3937_RS00485	0.31	+0.6
115,207	-		DDA3937_RS00485	0.44	+0.4
115,238	+		DDA3937_RS00485	0.50	+1.6
115,238	+		DDA3937_RS00485	0.50	-0.2
115,238	+		DDA3937_RS00485	0.50	-2.2
115,238	+		DDA3937_RS00485	0.50	-0.9
115,238	+		DDA3937_RS00485	0.50	-1.3
115,238	+		DDA3937_RS00485	0.50	+0.4
115,239	-		DDA3937_RS00485	0.50	-0.0
115,239	-		DDA3937_RS00485	0.50	-1.2
115,239	-		DDA3937_RS00485	0.50	-0.2
115,239	-		DDA3937_RS00485	0.50	-1.5
115,260	+		DDA3937_RS00485	0.54	-0.5
115,261	-		DDA3937_RS00485	0.54	+0.4
115,279	-		DDA3937_RS00485	0.58	-0.3
115,310	+		DDA3937_RS00485	0.64	-2.2
115,310	+		DDA3937_RS00485	0.64	-1.9
115,310	+		DDA3937_RS00485	0.64	+0.4
115,310	+		DDA3937_RS00485	0.64	-1.6
115,311	-		DDA3937_RS00485	0.64	-1.2
115,311	-		DDA3937_RS00485	0.64	-1.1
115,311	-		DDA3937_RS00485	0.64	+0.4
115,311	-		DDA3937_RS00485	0.64	+0.4
115,352	+		DDA3937_RS00485	0.72	-2.1
115,352	+		DDA3937_RS00485	0.72	+0.3
115,353	-		DDA3937_RS00485	0.72	-0.2
115,353	-		DDA3937_RS00485	0.72	-0.1
115,416	+		DDA3937_RS00485	0.84	-0.5
115,457	+				-1.6
115,457	+				+1.5
115,458	-				+1.1
115,458	-				-1.7
115,458	-				-2.0
115,493	-				-1.8
115,515	+				-1.4
115,515	+				-0.5
115,515	+				+0.3
115,515	+				+1.1
115,516	-				-2.3
115,516	-				+0.5
115,518	-				-1.9
115,529	-				+0.1
115,529	-				+1.1
115,538	-				-0.2
115,628	+		DDA3937_RS00490	0.29	-0.3
115,628	+		DDA3937_RS00490	0.29	-1.6
115,628	+		DDA3937_RS00490	0.29	+0.0
115,629	-		DDA3937_RS00490	0.29	-1.8
115,629	-		DDA3937_RS00490	0.29	+1.2
115,674	+		DDA3937_RS00490	0.49	-2.1
115,674	+		DDA3937_RS00490	0.49	-1.2
115,716	-		DDA3937_RS00490	0.68	+0.7
115,751	+		DDA3937_RS00490	0.83	-0.5
115,751	+		DDA3937_RS00490	0.83	-0.2
115,752	-		DDA3937_RS00490	0.83	+0.5
115,757	-		DDA3937_RS00490	0.86	-2.2
115,757	-		DDA3937_RS00490	0.86	-0.9
115,789	+				-1.2
115,789	+				-2.7
115,789	+				-1.4
115,789	+				-2.6
115,790	-				-0.7
115,790	-				-0.2
115,790	-				-0.8
115,790	-				+2.7
115,790	-				-0.6
115,790	-				-0.4
115,815	+				-1.6
115,815	+				+1.7
115,815	+				-3.0
115,816	-				+0.5
115,827	+				+1.6
115,827	+				-0.2
115,827	+				-1.1
115,827	+				+0.3
115,828	-				-0.7
115,828	-				-1.5
115,828	-				+1.7