Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00410 and DDA3937_RS00415 are separated by 113 nucleotides DDA3937_RS00415 and DDA3937_RS00420 are separated by 100 nucleotides
DDA3937_RS00410: DDA3937_RS00410 - exo-alpha-sialidase, at 96,463 to 97,509
_RS00410
DDA3937_RS00415: DDA3937_RS00415 - MHS family MFS transporter, at 97,623 to 98,972
_RS00415
DDA3937_RS00420: DDA3937_RS00420 - LacI family DNA-binding transcriptional regulator, at 99,073 to 100,077
_RS00420
Position (kb) 97
98
99 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 96.736 kb on + strand, within DDA3937_RS00410 at 96.736 kb on + strand, within DDA3937_RS00410 at 96.736 kb on + strand, within DDA3937_RS00410 at 96.736 kb on + strand, within DDA3937_RS00410 at 96.736 kb on + strand, within DDA3937_RS00410 at 96.736 kb on + strand, within DDA3937_RS00410 at 96.736 kb on + strand, within DDA3937_RS00410 at 96.737 kb on - strand, within DDA3937_RS00410 at 96.737 kb on - strand, within DDA3937_RS00410 at 96.738 kb on + strand, within DDA3937_RS00410 at 97.219 kb on + strand, within DDA3937_RS00410 at 97.219 kb on + strand, within DDA3937_RS00410 at 97.219 kb on + strand, within DDA3937_RS00410 at 97.219 kb on + strand, within DDA3937_RS00410 at 97.295 kb on - strand, within DDA3937_RS00410 at 97.311 kb on + strand, within DDA3937_RS00410 at 97.425 kb on + strand at 97.426 kb on - strand at 97.445 kb on + strand at 97.445 kb on + strand at 97.445 kb on + strand at 97.445 kb on + strand at 97.445 kb on + strand at 97.445 kb on + strand at 97.445 kb on + strand at 97.446 kb on - strand at 97.446 kb on - strand at 97.446 kb on - strand at 97.446 kb on - strand at 97.456 kb on + strand at 97.456 kb on + strand at 97.457 kb on - strand at 97.483 kb on + strand at 97.507 kb on + strand at 97.516 kb on + strand at 97.516 kb on + strand at 97.516 kb on + strand at 97.517 kb on - strand at 97.517 kb on - strand at 97.536 kb on - strand at 97.540 kb on + strand at 97.540 kb on + strand at 97.540 kb on + strand at 97.541 kb on - strand at 97.541 kb on - strand at 97.541 kb on - strand at 97.541 kb on - strand at 97.541 kb on - strand at 97.607 kb on + strand at 97.643 kb on - strand at 97.643 kb on - strand at 97.667 kb on + strand at 97.667 kb on + strand at 97.668 kb on - strand at 97.740 kb on + strand at 97.835 kb on - strand, within DDA3937_RS00415 at 97.835 kb on - strand, within DDA3937_RS00415 at 97.899 kb on - strand, within DDA3937_RS00415 at 97.899 kb on - strand, within DDA3937_RS00415 at 97.928 kb on + strand, within DDA3937_RS00415 at 97.968 kb on + strand, within DDA3937_RS00415 at 97.969 kb on - strand, within DDA3937_RS00415 at 97.969 kb on - strand, within DDA3937_RS00415 at 97.969 kb on - strand, within DDA3937_RS00415 at 97.969 kb on - strand, within DDA3937_RS00415 at 97.969 kb on - strand, within DDA3937_RS00415 at 98.008 kb on + strand, within DDA3937_RS00415 at 98.009 kb on - strand, within DDA3937_RS00415 at 98.256 kb on + strand, within DDA3937_RS00415 at 98.256 kb on + strand, within DDA3937_RS00415 at 98.256 kb on + strand, within DDA3937_RS00415 at 98.256 kb on + strand, within DDA3937_RS00415 at 98.256 kb on + strand, within DDA3937_RS00415 at 98.256 kb on + strand, within DDA3937_RS00415 at 98.256 kb on + strand, within DDA3937_RS00415 at 98.256 kb on + strand, within DDA3937_RS00415 at 98.256 kb on + strand, within DDA3937_RS00415 at 98.256 kb on + strand, within DDA3937_RS00415 at 98.256 kb on + strand, within DDA3937_RS00415 at 98.256 kb on + strand, within DDA3937_RS00415 at 98.256 kb on + strand, within DDA3937_RS00415 at 98.256 kb on + strand, within DDA3937_RS00415 at 98.256 kb on + strand, within DDA3937_RS00415 at 98.257 kb on - strand, within DDA3937_RS00415 at 98.257 kb on - strand, within DDA3937_RS00415 at 98.257 kb on - strand, within DDA3937_RS00415 at 98.257 kb on - strand, within DDA3937_RS00415 at 98.257 kb on - strand at 98.257 kb on - strand, within DDA3937_RS00415 at 98.257 kb on - strand, within DDA3937_RS00415 at 98.257 kb on - strand, within DDA3937_RS00415 at 98.257 kb on - strand, within DDA3937_RS00415 at 98.257 kb on - strand, within DDA3937_RS00415 at 98.257 kb on - strand, within DDA3937_RS00415 at 98.257 kb on - strand, within DDA3937_RS00415 at 98.257 kb on - strand, within DDA3937_RS00415 at 98.257 kb on - strand, within DDA3937_RS00415 at 98.257 kb on - strand, within DDA3937_RS00415 at 98.257 kb on - strand, within DDA3937_RS00415 at 98.257 kb on - strand, within DDA3937_RS00415 at 98.257 kb on - strand, within DDA3937_RS00415 at 98.258 kb on + strand, within DDA3937_RS00415 at 98.259 kb on - strand, within DDA3937_RS00415 at 98.259 kb on - strand at 98.473 kb on + strand, within DDA3937_RS00415 at 98.474 kb on - strand, within DDA3937_RS00415 at 98.474 kb on - strand, within DDA3937_RS00415 at 98.474 kb on - strand, within DDA3937_RS00415 at 98.504 kb on + strand, within DDA3937_RS00415 at 98.504 kb on + strand, within DDA3937_RS00415 at 98.505 kb on - strand, within DDA3937_RS00415 at 98.505 kb on - strand, within DDA3937_RS00415 at 98.588 kb on + strand, within DDA3937_RS00415 at 98.588 kb on + strand, within DDA3937_RS00415 at 98.588 kb on + strand, within DDA3937_RS00415 at 98.588 kb on + strand, within DDA3937_RS00415 at 98.588 kb on + strand, within DDA3937_RS00415 at 98.588 kb on + strand, within DDA3937_RS00415 at 98.588 kb on + strand, within DDA3937_RS00415 at 98.589 kb on - strand, within DDA3937_RS00415 at 98.589 kb on - strand, within DDA3937_RS00415 at 98.589 kb on - strand, within DDA3937_RS00415 at 98.589 kb on - strand, within DDA3937_RS00415 at 98.589 kb on - strand, within DDA3937_RS00415 at 98.589 kb on - strand, within DDA3937_RS00415 at 98.592 kb on + strand, within DDA3937_RS00415 at 98.592 kb on + strand, within DDA3937_RS00415 at 98.593 kb on - strand, within DDA3937_RS00415 at 98.593 kb on - strand, within DDA3937_RS00415 at 98.593 kb on - strand, within DDA3937_RS00415 at 98.593 kb on - strand, within DDA3937_RS00415 at 98.594 kb on + strand, within DDA3937_RS00415 at 98.594 kb on + strand, within DDA3937_RS00415 at 98.594 kb on + strand, within DDA3937_RS00415 at 98.594 kb on + strand, within DDA3937_RS00415 at 98.594 kb on + strand, within DDA3937_RS00415 at 98.594 kb on + strand, within DDA3937_RS00415 at 98.595 kb on - strand, within DDA3937_RS00415 at 98.595 kb on - strand, within DDA3937_RS00415 at 98.595 kb on - strand, within DDA3937_RS00415 at 98.595 kb on - strand, within DDA3937_RS00415 at 98.595 kb on - strand, within DDA3937_RS00415 at 98.595 kb on - strand, within DDA3937_RS00415 at 98.640 kb on + strand, within DDA3937_RS00415 at 98.640 kb on + strand, within DDA3937_RS00415 at 98.641 kb on - strand, within DDA3937_RS00415 at 98.641 kb on - strand, within DDA3937_RS00415 at 98.641 kb on - strand, within DDA3937_RS00415 at 98.682 kb on + strand, within DDA3937_RS00415 at 98.682 kb on + strand, within DDA3937_RS00415 at 98.682 kb on + strand, within DDA3937_RS00415 at 98.683 kb on - strand, within DDA3937_RS00415 at 98.683 kb on - strand, within DDA3937_RS00415 at 98.696 kb on + strand, within DDA3937_RS00415 at 98.697 kb on - strand, within DDA3937_RS00415 at 98.697 kb on - strand, within DDA3937_RS00415 at 98.697 kb on - strand, within DDA3937_RS00415 at 98.700 kb on - strand, within DDA3937_RS00415 at 98.717 kb on + strand, within DDA3937_RS00415 at 98.718 kb on - strand, within DDA3937_RS00415 at 98.764 kb on + strand, within DDA3937_RS00415 at 98.764 kb on + strand, within DDA3937_RS00415 at 98.765 kb on - strand, within DDA3937_RS00415 at 98.886 kb on + strand at 98.886 kb on + strand at 98.886 kb on + strand at 98.887 kb on - strand at 98.887 kb on - strand at 98.887 kb on - strand at 98.887 kb on - strand at 98.887 kb on - strand at 98.954 kb on + strand at 98.954 kb on + strand at 98.955 kb on - strand at 98.955 kb on - strand at 98.975 kb on + strand at 98.975 kb on + strand at 99.006 kb on - strand at 99.019 kb on + strand at 99.019 kb on + strand at 99.019 kb on + strand at 99.019 kb on + strand at 99.023 kb on + strand at 99.023 kb on + strand at 99.032 kb on - strand at 99.032 kb on - strand at 99.032 kb on - strand at 99.063 kb on - strand at 99.200 kb on - strand, within DDA3937_RS00420 at 99.200 kb on - strand, within DDA3937_RS00420 at 99.200 kb on - strand, within DDA3937_RS00420 at 99.200 kb on - strand, within DDA3937_RS00420 at 99.200 kb on - strand, within DDA3937_RS00420 at 99.200 kb on - strand, within DDA3937_RS00420 at 99.211 kb on + strand, within DDA3937_RS00420 at 99.218 kb on - strand, within DDA3937_RS00420 at 99.218 kb on - strand, within DDA3937_RS00420 at 99.352 kb on + strand, within DDA3937_RS00420 at 99.376 kb on + strand, within DDA3937_RS00420 at 99.377 kb on - strand, within DDA3937_RS00420 at 99.839 kb on + strand, within DDA3937_RS00420 at 99.839 kb on + strand, within DDA3937_RS00420 at 99.839 kb on + strand, within DDA3937_RS00420 at 99.839 kb on + strand, within DDA3937_RS00420 at 99.839 kb on + strand, within DDA3937_RS00420 at 99.840 kb on - strand, within DDA3937_RS00420 at 99.840 kb on - strand, within DDA3937_RS00420 at 99.865 kb on + strand, within DDA3937_RS00420 at 99.865 kb on + strand, within DDA3937_RS00420 at 99.866 kb on - strand, within DDA3937_RS00420 at 99.867 kb on + strand, within DDA3937_RS00420 at 99.868 kb on - strand, within DDA3937_RS00420 at 99.930 kb on + strand, within DDA3937_RS00420
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 96,736 + DDA3937_RS00410 0.26 -1.9 96,736 + DDA3937_RS00410 0.26 +0.5 96,736 + DDA3937_RS00410 0.26 -0.2 96,736 + DDA3937_RS00410 0.26 +1.1 96,736 + DDA3937_RS00410 0.26 +0.2 96,736 + DDA3937_RS00410 0.26 -2.4 96,736 + DDA3937_RS00410 0.26 -0.5 96,737 - DDA3937_RS00410 0.26 -0.2 96,737 - DDA3937_RS00410 0.26 -0.8 96,738 + DDA3937_RS00410 0.26 -2.3 97,219 + DDA3937_RS00410 0.72 -0.5 97,219 + DDA3937_RS00410 0.72 -0.0 97,219 + DDA3937_RS00410 0.72 -0.4 97,219 + DDA3937_RS00410 0.72 -0.1 97,295 - DDA3937_RS00410 0.79 -4.1 97,311 + DDA3937_RS00410 0.81 -0.2 97,425 + +0.1 97,426 - +0.1 97,445 + +1.2 97,445 + -1.9 97,445 + +4.1 97,445 + -0.7 97,445 + -0.1 97,445 + +3.8 97,445 + +0.5 97,446 - -0.9 97,446 - -0.5 97,446 - -2.6 97,446 - +0.5 97,456 + -0.9 97,456 + -0.2 97,457 - +0.2 97,483 + +0.8 97,507 + +1.8 97,516 + -0.2 97,516 + -0.4 97,516 + -2.1 97,517 - +0.1 97,517 - -0.8 97,536 - -0.3 97,540 + -0.7 97,540 + +0.9 97,540 + -2.2 97,541 - +0.5 97,541 - -0.6 97,541 - +0.4 97,541 - -0.5 97,541 - +1.0 97,607 + +0.9 97,643 - -0.9 97,643 - -1.2 97,667 + -1.5 97,667 + -1.6 97,668 - -3.7 97,740 + +0.9 97,835 - DDA3937_RS00415 0.16 -1.2 97,835 - DDA3937_RS00415 0.16 +0.2 97,899 - DDA3937_RS00415 0.20 -2.4 97,899 - DDA3937_RS00415 0.20 -1.9 97,928 + DDA3937_RS00415 0.23 -2.6 97,968 + DDA3937_RS00415 0.26 +0.2 97,969 - DDA3937_RS00415 0.26 +2.0 97,969 - DDA3937_RS00415 0.26 -0.6 97,969 - DDA3937_RS00415 0.26 -0.9 97,969 - DDA3937_RS00415 0.26 -3.0 97,969 - DDA3937_RS00415 0.26 -2.2 98,008 + DDA3937_RS00415 0.29 +0.5 98,009 - DDA3937_RS00415 0.29 +0.1 98,256 + DDA3937_RS00415 0.47 +0.3 98,256 + DDA3937_RS00415 0.47 -1.7 98,256 + DDA3937_RS00415 0.47 -0.4 98,256 + DDA3937_RS00415 0.47 +0.7 98,256 + DDA3937_RS00415 0.47 -0.2 98,256 + DDA3937_RS00415 0.47 -2.7 98,256 + DDA3937_RS00415 0.47 -0.3 98,256 + DDA3937_RS00415 0.47 +0.4 98,256 + DDA3937_RS00415 0.47 -1.7 98,256 + DDA3937_RS00415 0.47 -2.1 98,256 + DDA3937_RS00415 0.47 -1.8 98,256 + DDA3937_RS00415 0.47 -0.1 98,256 + DDA3937_RS00415 0.47 -1.4 98,256 + DDA3937_RS00415 0.47 -1.5 98,256 + DDA3937_RS00415 0.47 +1.4 98,257 - DDA3937_RS00415 0.47 -0.2 98,257 - DDA3937_RS00415 0.47 +1.8 98,257 - DDA3937_RS00415 0.47 -0.6 98,257 - DDA3937_RS00415 0.47 -0.3 98,257 - -0.7 98,257 - DDA3937_RS00415 0.47 +0.1 98,257 - DDA3937_RS00415 0.47 +0.1 98,257 - DDA3937_RS00415 0.47 +1.4 98,257 - DDA3937_RS00415 0.47 +0.2 98,257 - DDA3937_RS00415 0.47 -2.0 98,257 - DDA3937_RS00415 0.47 -0.3 98,257 - DDA3937_RS00415 0.47 +2.1 98,257 - DDA3937_RS00415 0.47 -0.9 98,257 - DDA3937_RS00415 0.47 -1.3 98,257 - DDA3937_RS00415 0.47 -0.2 98,257 - DDA3937_RS00415 0.47 -2.0 98,257 - DDA3937_RS00415 0.47 -2.2 98,257 - DDA3937_RS00415 0.47 -1.7 98,258 + DDA3937_RS00415 0.47 -0.8 98,259 - DDA3937_RS00415 0.47 -2.2 98,259 - +2.1 98,473 + DDA3937_RS00415 0.63 -1.4 98,474 - DDA3937_RS00415 0.63 -1.1 98,474 - DDA3937_RS00415 0.63 +1.0 98,474 - DDA3937_RS00415 0.63 -2.1 98,504 + DDA3937_RS00415 0.65 +0.6 98,504 + DDA3937_RS00415 0.65 -0.4 98,505 - DDA3937_RS00415 0.65 -1.0 98,505 - DDA3937_RS00415 0.65 -1.2 98,588 + DDA3937_RS00415 0.71 +0.5 98,588 + DDA3937_RS00415 0.71 -1.6 98,588 + DDA3937_RS00415 0.71 -1.0 98,588 + DDA3937_RS00415 0.71 -2.5 98,588 + DDA3937_RS00415 0.71 -1.2 98,588 + DDA3937_RS00415 0.71 +0.5 98,588 + DDA3937_RS00415 0.71 -2.2 98,589 - DDA3937_RS00415 0.72 -0.2 98,589 - DDA3937_RS00415 0.72 -0.6 98,589 - DDA3937_RS00415 0.72 -3.1 98,589 - DDA3937_RS00415 0.72 -0.9 98,589 - DDA3937_RS00415 0.72 -0.7 98,589 - DDA3937_RS00415 0.72 -2.2 98,592 + DDA3937_RS00415 0.72 +0.1 98,592 + DDA3937_RS00415 0.72 -1.0 98,593 - DDA3937_RS00415 0.72 +0.3 98,593 - DDA3937_RS00415 0.72 -0.2 98,593 - DDA3937_RS00415 0.72 +0.6 98,593 - DDA3937_RS00415 0.72 +0.7 98,594 + DDA3937_RS00415 0.72 +2.7 98,594 + DDA3937_RS00415 0.72 -1.1 98,594 + DDA3937_RS00415 0.72 +0.5 98,594 + DDA3937_RS00415 0.72 -0.9 98,594 + DDA3937_RS00415 0.72 +0.8 98,594 + DDA3937_RS00415 0.72 +1.4 98,595 - DDA3937_RS00415 0.72 +0.3 98,595 - DDA3937_RS00415 0.72 +1.0 98,595 - DDA3937_RS00415 0.72 -0.1 98,595 - DDA3937_RS00415 0.72 -0.6 98,595 - DDA3937_RS00415 0.72 -1.2 98,595 - DDA3937_RS00415 0.72 -2.2 98,640 + DDA3937_RS00415 0.75 -0.7 98,640 + DDA3937_RS00415 0.75 -2.1 98,641 - DDA3937_RS00415 0.75 -2.3 98,641 - DDA3937_RS00415 0.75 -1.2 98,641 - DDA3937_RS00415 0.75 -2.6 98,682 + DDA3937_RS00415 0.78 -0.4 98,682 + DDA3937_RS00415 0.78 +0.3 98,682 + DDA3937_RS00415 0.78 -1.2 98,683 - DDA3937_RS00415 0.79 -3.0 98,683 - DDA3937_RS00415 0.79 -1.5 98,696 + DDA3937_RS00415 0.79 -0.5 98,697 - DDA3937_RS00415 0.80 -1.5 98,697 - DDA3937_RS00415 0.80 +1.4 98,697 - DDA3937_RS00415 0.80 -0.2 98,700 - DDA3937_RS00415 0.80 -0.5 98,717 + DDA3937_RS00415 0.81 -0.9 98,718 - DDA3937_RS00415 0.81 -2.3 98,764 + DDA3937_RS00415 0.85 -1.7 98,764 + DDA3937_RS00415 0.85 -2.7 98,765 - DDA3937_RS00415 0.85 -0.3 98,886 + +0.4 98,886 + -2.2 98,886 + +0.0 98,887 - -0.5 98,887 - +0.2 98,887 - +0.3 98,887 - +1.2 98,887 - -2.7 98,954 + -0.9 98,954 + -1.6 98,955 - +0.2 98,955 - +0.1 98,975 + +1.6 98,975 + +0.7 99,006 - +0.3 99,019 + -1.2 99,019 + -1.7 99,019 + +0.5 99,019 + +0.0 99,023 + -0.0 99,023 + -1.9 99,032 - -0.9 99,032 - +0.1 99,032 - -0.2 99,063 - -0.3 99,200 - DDA3937_RS00420 0.13 +0.5 99,200 - DDA3937_RS00420 0.13 -1.9 99,200 - DDA3937_RS00420 0.13 -0.2 99,200 - DDA3937_RS00420 0.13 +0.4 99,200 - DDA3937_RS00420 0.13 -1.7 99,200 - DDA3937_RS00420 0.13 +2.0 99,211 + DDA3937_RS00420 0.14 -1.1 99,218 - DDA3937_RS00420 0.14 +1.6 99,218 - DDA3937_RS00420 0.14 +1.4 99,352 + DDA3937_RS00420 0.28 +0.1 99,376 + DDA3937_RS00420 0.30 +0.6 99,377 - DDA3937_RS00420 0.30 -0.4 99,839 + DDA3937_RS00420 0.76 -3.9 99,839 + DDA3937_RS00420 0.76 -0.2 99,839 + DDA3937_RS00420 0.76 -0.9 99,839 + DDA3937_RS00420 0.76 -0.4 99,839 + DDA3937_RS00420 0.76 +0.1 99,840 - DDA3937_RS00420 0.76 +0.4 99,840 - DDA3937_RS00420 0.76 -0.2 99,865 + DDA3937_RS00420 0.79 +1.0 99,865 + DDA3937_RS00420 0.79 +2.8 99,866 - DDA3937_RS00420 0.79 -0.9 99,867 + DDA3937_RS00420 0.79 -0.9 99,868 - DDA3937_RS00420 0.79 +0.5 99,930 + DDA3937_RS00420 0.85 +0.2
Or see this region's nucleotide sequence