Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00235 and DDA3937_RS00240 are separated by 118 nucleotides DDA3937_RS00240 and DDA3937_RS00245 are separated by 359 nucleotides
DDA3937_RS00235: DDA3937_RS00235 - MFS transporter, at 55,731 to 56,900
_RS00235
DDA3937_RS00240: DDA3937_RS00240 - histidine-type phosphatase, at 57,019 to 58,296
_RS00240
DDA3937_RS00245: DDA3937_RS00245 - sugar ABC transporter permease, at 58,656 to 59,504
_RS00245
Position (kb) 57
58
59 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 56.062 kb on + strand, within DDA3937_RS00235 at 56.101 kb on + strand, within DDA3937_RS00235 at 56.101 kb on + strand, within DDA3937_RS00235 at 56.101 kb on + strand, within DDA3937_RS00235 at 56.101 kb on + strand, within DDA3937_RS00235 at 56.102 kb on - strand, within DDA3937_RS00235 at 56.291 kb on + strand, within DDA3937_RS00235 at 56.452 kb on - strand, within DDA3937_RS00235 at 56.452 kb on - strand, within DDA3937_RS00235 at 56.666 kb on - strand, within DDA3937_RS00235 at 56.666 kb on - strand, within DDA3937_RS00235 at 56.666 kb on - strand, within DDA3937_RS00235 at 56.666 kb on - strand, within DDA3937_RS00235 at 56.718 kb on + strand, within DDA3937_RS00235 at 56.718 kb on + strand, within DDA3937_RS00235 at 56.718 kb on + strand, within DDA3937_RS00235 at 56.719 kb on - strand, within DDA3937_RS00235 at 56.753 kb on + strand, within DDA3937_RS00235 at 56.753 kb on + strand, within DDA3937_RS00235 at 56.753 kb on + strand, within DDA3937_RS00235 at 56.754 kb on - strand, within DDA3937_RS00235 at 56.754 kb on - strand, within DDA3937_RS00235 at 56.898 kb on + strand at 56.898 kb on + strand at 56.935 kb on + strand at 56.935 kb on + strand at 56.935 kb on + strand at 56.944 kb on + strand at 56.945 kb on - strand at 57.016 kb on + strand at 57.017 kb on - strand at 57.020 kb on + strand at 57.020 kb on + strand at 57.020 kb on + strand at 57.021 kb on - strand at 57.218 kb on + strand, within DDA3937_RS00240 at 57.219 kb on - strand, within DDA3937_RS00240 at 57.219 kb on - strand, within DDA3937_RS00240 at 57.219 kb on - strand, within DDA3937_RS00240 at 57.219 kb on - strand, within DDA3937_RS00240 at 57.219 kb on - strand, within DDA3937_RS00240 at 57.288 kb on + strand, within DDA3937_RS00240 at 57.288 kb on + strand, within DDA3937_RS00240 at 57.371 kb on + strand, within DDA3937_RS00240 at 57.371 kb on + strand, within DDA3937_RS00240 at 57.372 kb on - strand, within DDA3937_RS00240 at 57.372 kb on - strand, within DDA3937_RS00240 at 57.372 kb on - strand, within DDA3937_RS00240 at 57.372 kb on - strand, within DDA3937_RS00240 at 57.420 kb on + strand, within DDA3937_RS00240 at 57.433 kb on + strand, within DDA3937_RS00240 at 57.469 kb on + strand, within DDA3937_RS00240 at 57.473 kb on + strand, within DDA3937_RS00240 at 57.473 kb on + strand, within DDA3937_RS00240 at 57.474 kb on - strand, within DDA3937_RS00240 at 57.474 kb on - strand, within DDA3937_RS00240 at 57.497 kb on + strand, within DDA3937_RS00240 at 57.590 kb on + strand, within DDA3937_RS00240 at 57.591 kb on - strand, within DDA3937_RS00240 at 57.913 kb on + strand, within DDA3937_RS00240 at 57.913 kb on + strand, within DDA3937_RS00240 at 57.976 kb on + strand, within DDA3937_RS00240 at 57.976 kb on + strand, within DDA3937_RS00240 at 57.976 kb on + strand, within DDA3937_RS00240 at 57.977 kb on - strand, within DDA3937_RS00240 at 57.977 kb on - strand, within DDA3937_RS00240 at 57.977 kb on - strand, within DDA3937_RS00240 at 57.977 kb on - strand, within DDA3937_RS00240 at 57.977 kb on - strand, within DDA3937_RS00240 at 57.977 kb on - strand, within DDA3937_RS00240 at 57.977 kb on - strand, within DDA3937_RS00240 at 57.977 kb on - strand, within DDA3937_RS00240 at 57.977 kb on - strand, within DDA3937_RS00240 at 57.977 kb on - strand, within DDA3937_RS00240 at 57.977 kb on - strand, within DDA3937_RS00240 at 58.028 kb on + strand, within DDA3937_RS00240 at 58.041 kb on - strand, within DDA3937_RS00240 at 58.052 kb on - strand, within DDA3937_RS00240 at 58.052 kb on - strand, within DDA3937_RS00240 at 58.052 kb on - strand, within DDA3937_RS00240 at 58.052 kb on - strand at 58.052 kb on - strand, within DDA3937_RS00240 at 58.184 kb on - strand at 58.184 kb on - strand at 58.184 kb on - strand at 58.291 kb on + strand at 58.291 kb on + strand at 58.292 kb on - strand at 58.292 kb on - strand at 58.292 kb on - strand at 58.296 kb on + strand at 58.296 kb on + strand at 58.296 kb on + strand at 58.296 kb on + strand at 58.296 kb on + strand at 58.296 kb on + strand at 58.296 kb on + strand at 58.296 kb on + strand at 58.296 kb on + strand at 58.296 kb on + strand at 58.296 kb on + strand at 58.296 kb on + strand at 58.296 kb on + strand at 58.296 kb on + strand at 58.296 kb on + strand at 58.297 kb on - strand at 58.297 kb on - strand at 58.297 kb on - strand at 58.297 kb on - strand at 58.297 kb on - strand at 58.297 kb on - strand at 58.297 kb on - strand at 58.297 kb on - strand at 58.297 kb on - strand at 58.297 kb on - strand at 58.297 kb on - strand at 58.297 kb on - strand at 58.311 kb on + strand at 58.311 kb on + strand at 58.312 kb on - strand at 58.312 kb on - strand at 58.312 kb on - strand at 58.312 kb on - strand at 58.362 kb on + strand at 58.372 kb on - strand at 58.375 kb on + strand at 58.375 kb on + strand at 58.375 kb on + strand at 58.375 kb on + strand at 58.375 kb on + strand at 58.376 kb on - strand at 58.403 kb on + strand at 58.407 kb on + strand at 58.407 kb on + strand at 58.408 kb on - strand at 58.444 kb on + strand at 58.444 kb on + strand at 58.445 kb on - strand at 58.445 kb on - strand at 58.459 kb on + strand at 58.554 kb on + strand at 58.554 kb on + strand at 58.584 kb on + strand at 58.622 kb on - strand at 58.625 kb on + strand at 58.625 kb on + strand at 58.625 kb on + strand at 58.626 kb on - strand at 58.655 kb on + strand at 58.656 kb on - strand at 58.671 kb on - strand at 58.671 kb on - strand at 58.700 kb on - strand at 58.731 kb on + strand at 58.731 kb on + strand at 58.731 kb on + strand at 58.731 kb on + strand at 58.731 kb on + strand at 58.731 kb on + strand at 58.732 kb on - strand at 58.732 kb on - strand at 58.733 kb on + strand at 58.733 kb on + strand at 58.734 kb on - strand at 58.757 kb on + strand, within DDA3937_RS00245 at 58.757 kb on + strand, within DDA3937_RS00245 at 58.757 kb on + strand, within DDA3937_RS00245 at 58.757 kb on + strand, within DDA3937_RS00245 at 58.757 kb on + strand, within DDA3937_RS00245 at 58.758 kb on - strand, within DDA3937_RS00245 at 58.758 kb on - strand, within DDA3937_RS00245 at 58.758 kb on - strand, within DDA3937_RS00245 at 58.770 kb on + strand, within DDA3937_RS00245 at 58.770 kb on + strand, within DDA3937_RS00245 at 58.771 kb on - strand, within DDA3937_RS00245 at 58.790 kb on + strand, within DDA3937_RS00245 at 58.791 kb on - strand, within DDA3937_RS00245 at 58.791 kb on - strand, within DDA3937_RS00245 at 58.795 kb on - strand, within DDA3937_RS00245 at 58.795 kb on - strand, within DDA3937_RS00245 at 58.938 kb on + strand, within DDA3937_RS00245 at 59.119 kb on + strand, within DDA3937_RS00245 at 59.119 kb on + strand, within DDA3937_RS00245 at 59.185 kb on + strand, within DDA3937_RS00245 at 59.185 kb on + strand, within DDA3937_RS00245 at 59.186 kb on - strand, within DDA3937_RS00245 at 59.186 kb on - strand, within DDA3937_RS00245 at 59.186 kb on - strand, within DDA3937_RS00245 at 59.186 kb on - strand, within DDA3937_RS00245 at 59.187 kb on + strand, within DDA3937_RS00245 at 59.187 kb on + strand, within DDA3937_RS00245 at 59.188 kb on - strand, within DDA3937_RS00245 at 59.188 kb on - strand, within DDA3937_RS00245
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 56,062 + DDA3937_RS00235 0.28 +0.8 56,101 + DDA3937_RS00235 0.32 -0.6 56,101 + DDA3937_RS00235 0.32 +0.4 56,101 + DDA3937_RS00235 0.32 +2.1 56,101 + DDA3937_RS00235 0.32 +0.1 56,102 - DDA3937_RS00235 0.32 -2.2 56,291 + DDA3937_RS00235 0.48 -0.8 56,452 - DDA3937_RS00235 0.62 -0.1 56,452 - DDA3937_RS00235 0.62 -0.9 56,666 - DDA3937_RS00235 0.80 -0.9 56,666 - DDA3937_RS00235 0.80 -1.2 56,666 - DDA3937_RS00235 0.80 -1.7 56,666 - DDA3937_RS00235 0.80 +0.3 56,718 + DDA3937_RS00235 0.84 +0.5 56,718 + DDA3937_RS00235 0.84 +1.5 56,718 + DDA3937_RS00235 0.84 -0.2 56,719 - DDA3937_RS00235 0.84 +0.2 56,753 + DDA3937_RS00235 0.87 -3.5 56,753 + DDA3937_RS00235 0.87 -0.9 56,753 + DDA3937_RS00235 0.87 -0.2 56,754 - DDA3937_RS00235 0.87 -2.6 56,754 - DDA3937_RS00235 0.87 +1.1 56,898 + -0.4 56,898 + -0.2 56,935 + -2.7 56,935 + +0.8 56,935 + -0.4 56,944 + +0.6 56,945 - -2.0 57,016 + -1.4 57,017 - -1.4 57,020 + -1.5 57,020 + -1.7 57,020 + -0.0 57,021 - -0.5 57,218 + DDA3937_RS00240 0.16 +0.1 57,219 - DDA3937_RS00240 0.16 -1.8 57,219 - DDA3937_RS00240 0.16 +0.5 57,219 - DDA3937_RS00240 0.16 +0.4 57,219 - DDA3937_RS00240 0.16 -1.6 57,219 - DDA3937_RS00240 0.16 +1.8 57,288 + DDA3937_RS00240 0.21 -0.7 57,288 + DDA3937_RS00240 0.21 -0.6 57,371 + DDA3937_RS00240 0.28 +0.3 57,371 + DDA3937_RS00240 0.28 -0.3 57,372 - DDA3937_RS00240 0.28 -0.5 57,372 - DDA3937_RS00240 0.28 -1.2 57,372 - DDA3937_RS00240 0.28 -0.4 57,372 - DDA3937_RS00240 0.28 +0.8 57,420 + DDA3937_RS00240 0.31 -1.2 57,433 + DDA3937_RS00240 0.32 -3.6 57,469 + DDA3937_RS00240 0.35 +1.5 57,473 + DDA3937_RS00240 0.36 -0.4 57,473 + DDA3937_RS00240 0.36 +0.4 57,474 - DDA3937_RS00240 0.36 +0.6 57,474 - DDA3937_RS00240 0.36 -2.3 57,497 + DDA3937_RS00240 0.37 +1.2 57,590 + DDA3937_RS00240 0.45 +0.3 57,591 - DDA3937_RS00240 0.45 -1.9 57,913 + DDA3937_RS00240 0.70 -1.6 57,913 + DDA3937_RS00240 0.70 -2.1 57,976 + DDA3937_RS00240 0.75 -1.0 57,976 + DDA3937_RS00240 0.75 +0.1 57,976 + DDA3937_RS00240 0.75 -1.4 57,977 - DDA3937_RS00240 0.75 -1.1 57,977 - DDA3937_RS00240 0.75 -0.7 57,977 - DDA3937_RS00240 0.75 +1.1 57,977 - DDA3937_RS00240 0.75 -2.6 57,977 - DDA3937_RS00240 0.75 -1.7 57,977 - DDA3937_RS00240 0.75 -2.2 57,977 - DDA3937_RS00240 0.75 -0.9 57,977 - DDA3937_RS00240 0.75 -1.8 57,977 - DDA3937_RS00240 0.75 -0.5 57,977 - DDA3937_RS00240 0.75 +0.7 57,977 - DDA3937_RS00240 0.75 -0.9 58,028 + DDA3937_RS00240 0.79 -3.8 58,041 - DDA3937_RS00240 0.80 -1.9 58,052 - DDA3937_RS00240 0.81 +0.3 58,052 - DDA3937_RS00240 0.81 +0.1 58,052 - DDA3937_RS00240 0.81 -0.5 58,052 - +2.1 58,052 - DDA3937_RS00240 0.81 -1.9 58,184 - -0.6 58,184 - +2.4 58,184 - -0.6 58,291 + -0.9 58,291 + +0.5 58,292 - -0.5 58,292 - -0.7 58,292 - -1.9 58,296 + -0.2 58,296 + +1.4 58,296 + -0.9 58,296 + -0.3 58,296 + +2.2 58,296 + -2.6 58,296 + -0.7 58,296 + -2.1 58,296 + -0.9 58,296 + -1.6 58,296 + -0.7 58,296 + -0.3 58,296 + -1.0 58,296 + +0.1 58,296 + -0.5 58,297 - -0.7 58,297 - -0.7 58,297 - -0.9 58,297 - -1.9 58,297 - -1.4 58,297 - -1.0 58,297 - -1.4 58,297 - +1.7 58,297 - -0.9 58,297 - -0.2 58,297 - -0.9 58,297 - +0.9 58,311 + -1.0 58,311 + -3.3 58,312 - +1.7 58,312 - -1.2 58,312 - +0.2 58,312 - -0.9 58,362 + -1.6 58,372 - -3.2 58,375 + +0.7 58,375 + +2.1 58,375 + +0.1 58,375 + -2.9 58,375 + +0.1 58,376 - +1.4 58,403 + -2.4 58,407 + -1.7 58,407 + +0.6 58,408 - +0.2 58,444 + -0.5 58,444 + -0.0 58,445 - -0.7 58,445 - -0.5 58,459 + +0.9 58,554 + -1.2 58,554 + -0.9 58,584 + -0.7 58,622 - -2.2 58,625 + -1.2 58,625 + +2.1 58,625 + -1.4 58,626 - -0.8 58,655 + -0.1 58,656 - -0.4 58,671 - +2.4 58,671 - -0.2 58,700 - -1.2 58,731 + +1.2 58,731 + -1.5 58,731 + -3.3 58,731 + -0.9 58,731 + -0.2 58,731 + +1.6 58,732 - -0.1 58,732 - -1.7 58,733 + -2.9 58,733 + +0.8 58,734 - -1.3 58,757 + DDA3937_RS00245 0.12 +3.1 58,757 + DDA3937_RS00245 0.12 -0.6 58,757 + DDA3937_RS00245 0.12 +1.9 58,757 + DDA3937_RS00245 0.12 -0.9 58,757 + DDA3937_RS00245 0.12 -1.3 58,758 - DDA3937_RS00245 0.12 -2.9 58,758 - DDA3937_RS00245 0.12 -1.2 58,758 - DDA3937_RS00245 0.12 -1.2 58,770 + DDA3937_RS00245 0.13 -0.7 58,770 + DDA3937_RS00245 0.13 -0.5 58,771 - DDA3937_RS00245 0.14 +0.6 58,790 + DDA3937_RS00245 0.16 -0.7 58,791 - DDA3937_RS00245 0.16 -1.9 58,791 - DDA3937_RS00245 0.16 -0.7 58,795 - DDA3937_RS00245 0.16 +0.1 58,795 - DDA3937_RS00245 0.16 -0.7 58,938 + DDA3937_RS00245 0.33 -1.9 59,119 + DDA3937_RS00245 0.55 +0.9 59,119 + DDA3937_RS00245 0.55 -1.4 59,185 + DDA3937_RS00245 0.62 -1.5 59,185 + DDA3937_RS00245 0.62 +0.4 59,186 - DDA3937_RS00245 0.62 +1.5 59,186 - DDA3937_RS00245 0.62 -2.8 59,186 - DDA3937_RS00245 0.62 -0.2 59,186 - DDA3937_RS00245 0.62 -1.4 59,187 + DDA3937_RS00245 0.63 -1.7 59,187 + DDA3937_RS00245 0.63 -0.5 59,188 - DDA3937_RS00245 0.63 +0.2 59,188 - DDA3937_RS00245 0.63 +0.2
Or see this region's nucleotide sequence