Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00210

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
50,063	+		DDA3937_RS00200	0.82	+0.4
50,063	+		DDA3937_RS00200	0.82	+1.0
50,063	+		DDA3937_RS00200	0.82	+1.3
50,064	-		DDA3937_RS00200	0.82	-0.6
50,064	-		DDA3937_RS00200	0.82	-2.3
50,064	-		DDA3937_RS00200	0.82	-0.9
50,064	-		DDA3937_RS00200	0.82	+3.1
50,064	-				+1.5
50,099	+		DDA3937_RS00200	0.84	-1.5
50,099	+		DDA3937_RS00200	0.84	-0.2
50,099	+		DDA3937_RS00200	0.84	+1.1
50,099	+		DDA3937_RS00200	0.84	-2.7
50,099	+		DDA3937_RS00200	0.84	+0.1
50,100	-		DDA3937_RS00200	0.85	+1.1
50,100	-		DDA3937_RS00200	0.85	-1.4
50,158	+		DDA3937_RS00200	0.88	-1.7
50,158	+		DDA3937_RS00200	0.88	+0.3
50,180	+		DDA3937_RS00200	0.89	+0.3
50,180	+		DDA3937_RS00200	0.89	-0.2
50,180	+		DDA3937_RS00200	0.89	+0.8
50,180	+		DDA3937_RS00200	0.89	+3.0
50,181	-				-0.2
50,181	-		DDA3937_RS00200	0.89	-1.3
50,181	-		DDA3937_RS00200	0.89	+0.3
50,181	-		DDA3937_RS00200	0.89	-0.9
50,181	-		DDA3937_RS00200	0.89	-3.1
50,198	-				-0.3
50,296	+				-1.9
50,296	+				-1.0
50,296	+				-0.1
50,296	+				-1.1
50,296	+				-0.6
50,296	+				-2.2
50,296	+				+0.2
50,297	-				-0.1
50,297	-				-0.3
50,297	-				-1.5
50,297	-				-2.4
50,297	-				-1.6
50,297	-				-1.9
50,297	-				+0.1
50,297	-				-2.4
50,297	-				-0.7
50,297	-				-2.3
50,297	-				-0.1
50,329	+				-0.1
50,341	+				-2.6
50,341	+				+0.6
50,373	+				+0.5
50,373	+				-0.5
50,374	-				-1.2
50,374	-				-0.9
50,374	-				+1.1
50,479	+				-0.8
50,479	+				+2.1
50,479	+				-0.5
50,479	+				-0.6
50,480	-				+0.9
50,480	-				+2.8
50,498	+				-0.5
50,499	-				-0.9
50,499	-				-0.9
50,741	+				-1.6
50,742	-				-1.7
50,913	+				+0.0
50,926	-				-0.6
50,930	+				+0.1
50,930	+				-0.9
50,931	-				-3.2
51,024	+				-0.4
51,024	+				-0.1
51,024	+				-0.2
51,025	-				+0.1
51,025	-				+0.8
51,123	+		DDA3937_RS00210	0.16	-1.4
51,124	-		DDA3937_RS00210	0.17	+0.2
51,124	-		DDA3937_RS00210	0.17	+0.5
51,124	-		DDA3937_RS00210	0.17	-2.6
51,124	-		DDA3937_RS00210	0.17	+3.3
51,124	-		DDA3937_RS00210	0.17	-1.0
51,124	-		DDA3937_RS00210	0.17	+3.1
51,190	+		DDA3937_RS00210	0.27	-1.4
51,225	+		DDA3937_RS00210	0.33	-3.4
51,226	-		DDA3937_RS00210	0.33	-1.4
51,279	+		DDA3937_RS00210	0.41	-1.0
51,279	+		DDA3937_RS00210	0.41	+0.8
51,279	+		DDA3937_RS00210	0.41	-3.0
51,282	+		DDA3937_RS00210	0.42	-1.1
51,282	+				+0.5
51,282	+		DDA3937_RS00210	0.42	+0.2
51,282	+		DDA3937_RS00210	0.42	-0.2
51,282	+		DDA3937_RS00210	0.42	-3.2
51,282	+		DDA3937_RS00210	0.42	-2.1
51,282	+		DDA3937_RS00210	0.42	-2.5
51,283	-		DDA3937_RS00210	0.42	-1.5
51,283	-		DDA3937_RS00210	0.42	-1.8
51,283	-		DDA3937_RS00210	0.42	-0.3
51,283	-		DDA3937_RS00210	0.42	-1.4
51,303	+		DDA3937_RS00210	0.45	-0.8
51,304	-		DDA3937_RS00210	0.45	+0.2
51,304	-		DDA3937_RS00210	0.45	+0.1
51,304	-		DDA3937_RS00210	0.45	-0.7
51,304	-		DDA3937_RS00210	0.45	-0.2
51,355	+		DDA3937_RS00210	0.53	+0.9
51,356	-		DDA3937_RS00210	0.54	+0.8
51,356	-		DDA3937_RS00210	0.54	-2.4
51,356	-		DDA3937_RS00210	0.54	-0.5
51,537	+		DDA3937_RS00210	0.82	-2.5
51,538	-		DDA3937_RS00210	0.83	-1.9
51,578	-		DDA3937_RS00210	0.89	-2.2
51,578	-		DDA3937_RS00210	0.89	-0.5
51,578	-		DDA3937_RS00210	0.89	-0.5
51,600	-				-1.1
51,623	+				-0.5
51,623	+				-1.2
51,623	+				-0.7
51,623	+				+1.7
51,623	+				+0.2
51,624	-				-0.2
51,658	+				-0.2
51,658	+				-0.7
51,659	-				-1.2
51,659	-				-0.1
51,659	-				-2.4
51,664	+				+1.1
51,664	+				-1.4
51,664	+				+0.2
51,664	+				+0.5
51,664	+				-1.8
51,664	+				-1.4
51,664	+				-0.2
51,664	+				+0.1
51,664	+				+2.1
51,664	+				+0.4
51,664	+				-0.5
51,664	+				-1.9
51,664	+				-1.4
51,664	+				+1.8
51,664	+				-1.9
51,664	+				-1.9
51,664	+				-2.0
51,664	+				-1.1
51,665	-				-0.3
51,665	-				+1.5
51,665	-				+0.6
51,665	-				-0.7
51,665	-				-1.2
51,665	-				-2.5
51,665	-				-1.6
51,665	-				-1.2
51,665	-				+0.5
51,665	-				+1.7
51,665	-				-0.5
51,665	-				-0.6
51,665	-				-0.2
51,665	-				-0.2
51,665	-				+0.1
51,665	-				-1.0
51,665	-				-0.2
51,665	-				-1.2
51,665	-				-1.5
51,665	-				-0.7
51,665	-				+0.2
51,665	-				-1.7
51,665	-				+0.9
51,665	-				+1.1
51,666	+				-0.2
51,667	-				-1.2
51,667	-				-0.1
51,667	-				+4.7
51,667	-				-0.4
51,667	-				-3.7
51,676	+				+0.8
51,676	+				+0.2
51,676	+				+0.0
51,676	+				+0.4
51,676	+				-1.5
51,677	-				-1.5
51,677	-				+0.2
51,677	-				+0.5
51,677	-				-0.7
51,682	+				-2.2
51,682	+				-1.0
51,682	+				-0.3
51,682	+				+2.5
51,682	+				-0.9
51,683	-				-0.5
51,683	-				-0.3
51,713	-				-1.4
51,770	+				+0.3
51,771	-				-0.2
51,781	-				-2.9
51,834	+		DDA3937_RS00215	0.11	-0.7
51,835	-		DDA3937_RS00215	0.11	+0.1
51,835	-		DDA3937_RS00215	0.11	-0.6
51,835	-		DDA3937_RS00215	0.11	+1.0
51,847	+		DDA3937_RS00215	0.12	-1.2
51,905	-		DDA3937_RS00215	0.20	+0.5
51,941	+		DDA3937_RS00215	0.24	-0.7
52,018	+		DDA3937_RS00215	0.34	-0.1
52,018	+		DDA3937_RS00215	0.34	+0.1
52,018	+		DDA3937_RS00215	0.34	-0.1
52,018	+		DDA3937_RS00215	0.34	-1.8
52,019	-		DDA3937_RS00215	0.34	-0.2
52,023	+		DDA3937_RS00215	0.35	-0.9
52,094	+		DDA3937_RS00215	0.44	+0.4
52,095	-		DDA3937_RS00215	0.44	+0.1
52,104	-		DDA3937_RS00215	0.45	-2.8
52,201	+		DDA3937_RS00215	0.57	-1.6
52,202	-		DDA3937_RS00215	0.57	-0.2
52,279	+		DDA3937_RS00215	0.67	+1.9
52,279	+				+2.1
52,279	+		DDA3937_RS00215	0.67	-0.5
52,279	+		DDA3937_RS00215	0.67	-1.7
52,279	+		DDA3937_RS00215	0.67	-0.7
52,279	+		DDA3937_RS00215	0.67	-1.6
52,280	-		DDA3937_RS00215	0.67	-1.0
52,280	-		DDA3937_RS00215	0.67	-1.3
52,280	-		DDA3937_RS00215	0.67	-3.4
52,280	-		DDA3937_RS00215	0.67	-0.9
52,280	-		DDA3937_RS00215	0.67	-2.0
52,280	-		DDA3937_RS00215	0.67	+1.2
52,280	-		DDA3937_RS00215	0.67	-2.7
52,287	+		DDA3937_RS00215	0.68	+0.9
52,374	+		DDA3937_RS00215	0.79	-3.1
52,374	+		DDA3937_RS00215	0.79	-0.7
52,375	-				+1.4
52,375	-		DDA3937_RS00215	0.79	-1.8
52,375	-		DDA3937_RS00215	0.79	+1.1
52,408	+		DDA3937_RS00215	0.83	-1.7
52,409	-		DDA3937_RS00215	0.83	+2.8
52,445	+		DDA3937_RS00215	0.88	-1.6
52,445	+		DDA3937_RS00215	0.88	-0.8
52,446	-		DDA3937_RS00215	0.88	-2.7
52,446	-		DDA3937_RS00215	0.88	-1.0
52,521	+				+0.1
52,521	+				+0.8
52,521	+				-0.6
52,548	+				-2.1
52,549	-				-2.6
52,581	+				+0.2
52,581	+				-0.5
52,582	-				+2.5
52,590	+				-0.3
52,612	+		DDA3937_RS00220	0.10	-2.9
52,612	+		DDA3937_RS00220	0.10	-1.2
52,613	-		DDA3937_RS00220	0.10	+0.4