Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20745

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS20740 and DDA3937_RS20745 overlap by 4 nucleotidesDDA3937_RS20745 and DDA3937_RS20750 are separated by 12 nucleotides DDA3937_RS20740: DDA3937_RS20740 - type III PLP-dependent enzyme, at 4,713,410 to 4,714,732 _RS20740 DDA3937_RS20745: DDA3937_RS20745 - hypothetical protein, at 4,714,729 to 4,715,640 _RS20745 DDA3937_RS20750: DDA3937_RS20750 - acyl--CoA ligase, at 4,715,653 to 4,717,236 _RS20750 Position (kb) 4714 4715 4716Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 4713.731 kb on + strand, within DDA3937_RS20740at 4713.731 kb on + strand, within DDA3937_RS20740at 4713.731 kb on + strand, within DDA3937_RS20740at 4713.731 kb on + strand, within DDA3937_RS20740at 4713.731 kb on + strand, within DDA3937_RS20740at 4713.731 kb on + strandat 4713.732 kb on - strand, within DDA3937_RS20740at 4713.931 kb on + strand, within DDA3937_RS20740at 4714.022 kb on + strand, within DDA3937_RS20740at 4714.022 kb on + strand, within DDA3937_RS20740at 4714.076 kb on - strand, within DDA3937_RS20740at 4714.098 kb on + strand, within DDA3937_RS20740at 4714.099 kb on - strand, within DDA3937_RS20740at 4714.099 kb on - strand, within DDA3937_RS20740at 4714.099 kb on - strand, within DDA3937_RS20740at 4714.105 kb on + strand, within DDA3937_RS20740at 4714.106 kb on - strand, within DDA3937_RS20740at 4714.106 kb on - strand, within DDA3937_RS20740at 4714.197 kb on + strand, within DDA3937_RS20740at 4714.197 kb on + strand, within DDA3937_RS20740at 4714.198 kb on - strand, within DDA3937_RS20740at 4714.198 kb on - strand, within DDA3937_RS20740at 4714.277 kb on + strand, within DDA3937_RS20740at 4714.466 kb on + strand, within DDA3937_RS20740at 4714.467 kb on - strand, within DDA3937_RS20740at 4714.525 kb on - strand, within DDA3937_RS20740at 4714.575 kb on - strand, within DDA3937_RS20740at 4714.575 kb on - strand, within DDA3937_RS20740at 4714.740 kb on + strandat 4714.740 kb on + strandat 4714.740 kb on + strandat 4714.760 kb on + strandat 4714.761 kb on - strandat 4714.834 kb on + strand, within DDA3937_RS20745at 4714.920 kb on + strand, within DDA3937_RS20745at 4714.921 kb on - strand, within DDA3937_RS20745at 4714.971 kb on + strand, within DDA3937_RS20745at 4714.971 kb on + strand, within DDA3937_RS20745at 4714.972 kb on - strand, within DDA3937_RS20745at 4714.972 kb on - strand, within DDA3937_RS20745at 4715.147 kb on - strand, within DDA3937_RS20745at 4715.270 kb on + strand, within DDA3937_RS20745at 4715.306 kb on + strand, within DDA3937_RS20745at 4715.307 kb on - strand, within DDA3937_RS20745at 4715.307 kb on - strand, within DDA3937_RS20745at 4715.317 kb on + strand, within DDA3937_RS20745at 4715.317 kb on + strand, within DDA3937_RS20745at 4715.317 kb on + strand, within DDA3937_RS20745at 4715.318 kb on - strand, within DDA3937_RS20745at 4715.318 kb on - strand, within DDA3937_RS20745at 4715.318 kb on - strand, within DDA3937_RS20745at 4715.439 kb on - strand, within DDA3937_RS20745at 4715.487 kb on - strand, within DDA3937_RS20745at 4715.507 kb on + strand, within DDA3937_RS20745at 4715.507 kb on + strand, within DDA3937_RS20745at 4715.507 kb on + strand, within DDA3937_RS20745at 4715.508 kb on - strand, within DDA3937_RS20745at 4715.543 kb on - strand, within DDA3937_RS20745at 4715.574 kb on + strandat 4715.634 kb on + strandat 4715.754 kb on + strandat 4715.754 kb on + strandat 4715.755 kb on - strandat 4715.755 kb on - strandat 4715.755 kb on - strandat 4715.755 kb on - strandat 4715.755 kb on - strandat 4715.835 kb on + strand, within DDA3937_RS20750at 4715.863 kb on + strand, within DDA3937_RS20750at 4715.863 kb on + strand, within DDA3937_RS20750at 4715.864 kb on - strand, within DDA3937_RS20750at 4715.899 kb on - strand, within DDA3937_RS20750at 4715.899 kb on - strand, within DDA3937_RS20750at 4715.899 kb on - strand, within DDA3937_RS20750at 4715.925 kb on + strand, within DDA3937_RS20750at 4715.925 kb on + strand, within DDA3937_RS20750at 4715.925 kb on + strand, within DDA3937_RS20750at 4716.034 kb on + strand, within DDA3937_RS20750at 4716.034 kb on + strand, within DDA3937_RS20750at 4716.034 kb on + strand, within DDA3937_RS20750at 4716.034 kb on + strand, within DDA3937_RS20750at 4716.034 kb on + strand, within DDA3937_RS20750at 4716.035 kb on - strand, within DDA3937_RS20750at 4716.035 kb on - strand, within DDA3937_RS20750at 4716.035 kb on - strand, within DDA3937_RS20750at 4716.159 kb on + strand, within DDA3937_RS20750at 4716.159 kb on + strand, within DDA3937_RS20750at 4716.160 kb on - strand, within DDA3937_RS20750at 4716.163 kb on + strand, within DDA3937_RS20750at 4716.163 kb on + strand, within DDA3937_RS20750at 4716.163 kb on + strand, within DDA3937_RS20750at 4716.163 kb on + strand, within DDA3937_RS20750at 4716.163 kb on + strand, within DDA3937_RS20750at 4716.163 kb on + strand, within DDA3937_RS20750at 4716.164 kb on - strand, within DDA3937_RS20750at 4716.164 kb on - strand, within DDA3937_RS20750at 4716.164 kb on - strand, within DDA3937_RS20750at 4716.216 kb on + strand, within DDA3937_RS20750at 4716.216 kb on + strand, within DDA3937_RS20750at 4716.216 kb on + strand, within DDA3937_RS20750at 4716.217 kb on - strand, within DDA3937_RS20750at 4716.248 kb on - strand, within DDA3937_RS20750at 4716.304 kb on + strand, within DDA3937_RS20750at 4716.313 kb on + strand, within DDA3937_RS20750at 4716.314 kb on - strand, within DDA3937_RS20750at 4716.314 kb on - strand, within DDA3937_RS20750at 4716.345 kb on + strand, within DDA3937_RS20750at 4716.345 kb on + strand, within DDA3937_RS20750at 4716.346 kb on - strand, within DDA3937_RS20750at 4716.346 kb on - strand, within DDA3937_RS20750at 4716.346 kb on - strand, within DDA3937_RS20750at 4716.346 kb on - strand, within DDA3937_RS20750at 4716.356 kb on + strand, within DDA3937_RS20750at 4716.357 kb on - strand, within DDA3937_RS20750at 4716.419 kb on + strand, within DDA3937_RS20750at 4716.474 kb on + strand, within DDA3937_RS20750at 4716.474 kb on + strand, within DDA3937_RS20750at 4716.546 kb on + strand, within DDA3937_RS20750at 4716.546 kb on + strand, within DDA3937_RS20750at 4716.547 kb on - strand, within DDA3937_RS20750at 4716.572 kb on - strand, within DDA3937_RS20750at 4716.572 kb on - strand, within DDA3937_RS20750at 4716.580 kb on + strand, within DDA3937_RS20750at 4716.581 kb on - strand, within DDA3937_RS20750at 4716.610 kb on + strand, within DDA3937_RS20750at 4716.610 kb on + strand, within DDA3937_RS20750at 4716.610 kb on + strand, within DDA3937_RS20750at 4716.610 kb on + strand, within DDA3937_RS20750at 4716.611 kb on - strand, within DDA3937_RS20750at 4716.625 kb on + strand, within DDA3937_RS20750at 4716.626 kb on - strand, within DDA3937_RS20750

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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4,713,731 + DDA3937_RS20740 0.24 -1.6
4,713,731 + DDA3937_RS20740 0.24 -0.8
4,713,731 + DDA3937_RS20740 0.24 +1.1
4,713,731 + DDA3937_RS20740 0.24 +0.4
4,713,731 + DDA3937_RS20740 0.24 -1.2
4,713,731 + -0.4
4,713,732 - DDA3937_RS20740 0.24 +0.8
4,713,931 + DDA3937_RS20740 0.39 -2.2
4,714,022 + DDA3937_RS20740 0.46 -0.4
4,714,022 + DDA3937_RS20740 0.46 +0.1
4,714,076 - DDA3937_RS20740 0.50 +1.8
4,714,098 + DDA3937_RS20740 0.52 -2.7
4,714,099 - DDA3937_RS20740 0.52 -1.2
4,714,099 - DDA3937_RS20740 0.52 +1.3
4,714,099 - DDA3937_RS20740 0.52 -2.5
4,714,105 + DDA3937_RS20740 0.53 +1.2
4,714,106 - DDA3937_RS20740 0.53 +1.8
4,714,106 - DDA3937_RS20740 0.53 -3.5
4,714,197 + DDA3937_RS20740 0.59 +1.1
4,714,197 + DDA3937_RS20740 0.59 +0.6
4,714,198 - DDA3937_RS20740 0.60 -0.1
4,714,198 - DDA3937_RS20740 0.60 +1.8
4,714,277 + DDA3937_RS20740 0.66 -0.4
4,714,466 + DDA3937_RS20740 0.80 -1.9
4,714,467 - DDA3937_RS20740 0.80 +1.0
4,714,525 - DDA3937_RS20740 0.84 -1.4
4,714,575 - DDA3937_RS20740 0.88 +0.9
4,714,575 - DDA3937_RS20740 0.88 -0.4
4,714,740 + -0.4
4,714,740 + +0.0
4,714,740 + +1.0
4,714,760 + +0.1
4,714,761 - -1.0
4,714,834 + DDA3937_RS20745 0.12 -2.2
4,714,920 + DDA3937_RS20745 0.21 -0.2
4,714,921 - DDA3937_RS20745 0.21 -2.9
4,714,971 + DDA3937_RS20745 0.27 -0.6
4,714,971 + DDA3937_RS20745 0.27 -0.2
4,714,972 - DDA3937_RS20745 0.27 +3.0
4,714,972 - DDA3937_RS20745 0.27 +3.1
4,715,147 - DDA3937_RS20745 0.46 +1.6
4,715,270 + DDA3937_RS20745 0.59 +2.6
4,715,306 + DDA3937_RS20745 0.63 +0.6
4,715,307 - DDA3937_RS20745 0.63 -0.4
4,715,307 - DDA3937_RS20745 0.63 +0.1
4,715,317 + DDA3937_RS20745 0.64 +0.1
4,715,317 + DDA3937_RS20745 0.64 -2.9
4,715,317 + DDA3937_RS20745 0.64 -0.8
4,715,318 - DDA3937_RS20745 0.65 +0.2
4,715,318 - DDA3937_RS20745 0.65 -2.0
4,715,318 - DDA3937_RS20745 0.65 -0.4
4,715,439 - DDA3937_RS20745 0.78 +0.7
4,715,487 - DDA3937_RS20745 0.83 -1.5
4,715,507 + DDA3937_RS20745 0.85 -1.0
4,715,507 + DDA3937_RS20745 0.85 -1.0
4,715,507 + DDA3937_RS20745 0.85 +0.1
4,715,508 - DDA3937_RS20745 0.85 +0.1
4,715,543 - DDA3937_RS20745 0.89 +0.4
4,715,574 + -0.1
4,715,634 + -1.2
4,715,754 + +0.5
4,715,754 + -0.3
4,715,755 - -1.3
4,715,755 - -0.7
4,715,755 - +1.2
4,715,755 - -0.9
4,715,755 - -0.4
4,715,835 + DDA3937_RS20750 0.11 -0.0
4,715,863 + DDA3937_RS20750 0.13 +1.0
4,715,863 + DDA3937_RS20750 0.13 -1.0
4,715,864 - DDA3937_RS20750 0.13 -3.9
4,715,899 - DDA3937_RS20750 0.16 +0.2
4,715,899 - DDA3937_RS20750 0.16 -1.8
4,715,899 - DDA3937_RS20750 0.16 +0.5
4,715,925 + DDA3937_RS20750 0.17 -1.3
4,715,925 + DDA3937_RS20750 0.17 -1.4
4,715,925 + DDA3937_RS20750 0.17 +1.4
4,716,034 + DDA3937_RS20750 0.24 +1.1
4,716,034 + DDA3937_RS20750 0.24 -0.6
4,716,034 + DDA3937_RS20750 0.24 +0.6
4,716,034 + DDA3937_RS20750 0.24 +0.5
4,716,034 + DDA3937_RS20750 0.24 -1.7
4,716,035 - DDA3937_RS20750 0.24 -3.2
4,716,035 - DDA3937_RS20750 0.24 -1.4
4,716,035 - DDA3937_RS20750 0.24 +0.3
4,716,159 + DDA3937_RS20750 0.32 -0.3
4,716,159 + DDA3937_RS20750 0.32 +1.6
4,716,160 - DDA3937_RS20750 0.32 -1.4
4,716,163 + DDA3937_RS20750 0.32 +0.6
4,716,163 + DDA3937_RS20750 0.32 +0.3
4,716,163 + DDA3937_RS20750 0.32 -1.1
4,716,163 + DDA3937_RS20750 0.32 +1.0
4,716,163 + DDA3937_RS20750 0.32 -1.2
4,716,163 + DDA3937_RS20750 0.32 +0.3
4,716,164 - DDA3937_RS20750 0.32 -2.5
4,716,164 - DDA3937_RS20750 0.32 -1.0
4,716,164 - DDA3937_RS20750 0.32 +2.0
4,716,216 + DDA3937_RS20750 0.36 +0.1
4,716,216 + DDA3937_RS20750 0.36 -4.8
4,716,216 + DDA3937_RS20750 0.36 -1.0
4,716,217 - DDA3937_RS20750 0.36 +1.4
4,716,248 - DDA3937_RS20750 0.38 +1.2
4,716,304 + DDA3937_RS20750 0.41 -2.1
4,716,313 + DDA3937_RS20750 0.42 -1.2
4,716,314 - DDA3937_RS20750 0.42 -1.0
4,716,314 - DDA3937_RS20750 0.42 -2.3
4,716,345 + DDA3937_RS20750 0.44 -2.2
4,716,345 + DDA3937_RS20750 0.44 -1.2
4,716,346 - DDA3937_RS20750 0.44 -0.3
4,716,346 - DDA3937_RS20750 0.44 +0.6
4,716,346 - DDA3937_RS20750 0.44 +1.2
4,716,346 - DDA3937_RS20750 0.44 -1.0
4,716,356 + DDA3937_RS20750 0.44 +0.6
4,716,357 - DDA3937_RS20750 0.44 -2.1
4,716,419 + DDA3937_RS20750 0.48 +0.4
4,716,474 + DDA3937_RS20750 0.52 -0.0
4,716,474 + DDA3937_RS20750 0.52 +1.7
4,716,546 + DDA3937_RS20750 0.56 -2.8
4,716,546 + DDA3937_RS20750 0.56 -0.2
4,716,547 - DDA3937_RS20750 0.56 -0.9
4,716,572 - DDA3937_RS20750 0.58 -2.5
4,716,572 - DDA3937_RS20750 0.58 -2.5
4,716,580 + DDA3937_RS20750 0.59 +0.8
4,716,581 - DDA3937_RS20750 0.59 -1.2
4,716,610 + DDA3937_RS20750 0.60 +0.4
4,716,610 + DDA3937_RS20750 0.60 +0.0
4,716,610 + DDA3937_RS20750 0.60 -2.1
4,716,610 + DDA3937_RS20750 0.60 +2.5
4,716,611 - DDA3937_RS20750 0.60 -2.2
4,716,625 + DDA3937_RS20750 0.61 -0.3
4,716,626 - DDA3937_RS20750 0.61 +1.2

Or see this region's nucleotide sequence