Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20595

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,684,191	-		DDA3937_RS20590	0.26	-1.9
4,684,213	+		DDA3937_RS20590	0.28	-0.9
4,684,395	+		DDA3937_RS20590	0.50	-1.2
4,684,395	+		DDA3937_RS20590	0.50	+1.2
4,684,395	+		DDA3937_RS20590	0.50	-0.8
4,684,396	-		DDA3937_RS20590	0.50	+0.7
4,684,396	-		DDA3937_RS20590	0.50	-3.8
4,684,396	-		DDA3937_RS20590	0.50	-2.6
4,684,396	-		DDA3937_RS20590	0.50	-1.0
4,684,396	-		DDA3937_RS20590	0.50	-1.8
4,684,425	+		DDA3937_RS20590	0.54	-0.8
4,684,430	-		DDA3937_RS20590	0.55	-0.4
4,684,494	+		DDA3937_RS20590	0.62	+0.9
4,684,604	+		DDA3937_RS20590	0.76	-1.7
4,684,604	+		DDA3937_RS20590	0.76	+0.5
4,684,605	-		DDA3937_RS20590	0.76	+0.6
4,684,616	+		DDA3937_RS20590	0.77	+2.2
4,684,636	-		DDA3937_RS20590	0.80	+0.1
4,684,636	-		DDA3937_RS20590	0.80	+0.6
4,684,638	-		DDA3937_RS20590	0.80	-1.0
4,684,638	-		DDA3937_RS20590	0.80	+0.8
4,684,790	+				-2.3
4,684,790	+				-0.4
4,684,807	+				+0.7
4,684,830	+				+0.2
4,684,830	+				+1.9
4,684,830	+				+0.4
4,684,830	+				-1.9
4,684,831	-				+1.2
4,684,831	-				-1.3
4,684,831	-				-1.9
4,684,831	-				+0.7
4,684,831	-				+0.3
4,684,831	-				-1.4
4,684,834	+				+0.9
4,684,835	-				+2.6
4,684,835	-				-1.4
4,684,836	+				-1.8
4,684,836	+				-0.4
4,684,837	-				-1.1
4,684,837	-				+1.7
4,684,837	-				-0.8
4,685,053	+				-1.7
4,685,053	+				-1.4
4,685,086	-				+0.1
4,685,086	-				-2.4
4,685,114	+				-1.4
4,685,114	+				+0.1
4,685,114	+				-0.4
4,685,114	+				-2.4
4,685,115	-				-0.6
4,685,115	-				-2.4
4,685,115	-				-2.1
4,685,115	-				+0.4
4,685,115	-				+0.2
4,685,115	-				-1.1
4,685,129	+				-1.6
4,685,129	+				+1.3
4,685,129	+				+1.5
4,685,129	+				+3.3
4,685,151	-				+0.2
4,685,403	-		DDA3937_RS20595	0.23	+0.0
4,685,403	-		DDA3937_RS20595	0.23	-1.3
4,685,753	-		DDA3937_RS20595	0.59	+0.1
4,685,753	-		DDA3937_RS20595	0.59	+1.2
4,685,859	+		DDA3937_RS20595	0.70	-1.4
4,685,860	-		DDA3937_RS20595	0.70	-0.3
4,685,908	+		DDA3937_RS20595	0.75	+1.0
4,685,908	+		DDA3937_RS20595	0.75	+0.8
4,685,908	+		DDA3937_RS20595	0.75	+0.1
4,685,908	+		DDA3937_RS20595	0.75	-0.9
4,685,908	+		DDA3937_RS20595	0.75	+1.2
4,685,908	+		DDA3937_RS20595	0.75	-0.7
4,685,908	+		DDA3937_RS20595	0.75	-0.8
4,685,909	-		DDA3937_RS20595	0.76	-1.4
4,685,909	-		DDA3937_RS20595	0.76	+2.5
4,685,909	-		DDA3937_RS20595	0.76	+1.2
4,685,909	-		DDA3937_RS20595	0.76	+2.2
4,685,909	-		DDA3937_RS20595	0.76	+0.2
4,685,909	-		DDA3937_RS20595	0.76	-0.1
4,685,912	+		DDA3937_RS20595	0.76	+1.2
4,685,912	+		DDA3937_RS20595	0.76	-1.4
4,685,912	+		DDA3937_RS20595	0.76	-0.2
4,685,913	-		DDA3937_RS20595	0.76	+1.4
4,685,931	+		DDA3937_RS20595	0.78	+0.0
4,685,932	-		DDA3937_RS20595	0.78	+0.6
4,685,932	-		DDA3937_RS20595	0.78	-1.0
4,685,955	+		DDA3937_RS20595	0.80	+0.1
4,685,956	-		DDA3937_RS20595	0.80	-2.5
4,685,956	-		DDA3937_RS20595	0.80	-0.4
4,686,090	+				+0.8
4,686,091	-				-1.3
4,686,091	-				+0.5
4,686,091	-				+0.1
4,686,091	-				-0.8
4,686,091	-				+1.0
4,686,091	-				-0.4
4,686,105	+				+1.5
4,686,105	+				-1.9
4,686,105	+				-0.2
4,686,105	+				-1.0
4,686,106	-				-0.8
4,686,106	-				-0.8
4,686,106	-				-0.4
4,686,106	-				+0.1
4,686,128	-				+0.7
4,686,135	+				+0.7
4,686,136	-				-1.1
4,686,136	-				-0.9
4,686,136	-				+1.0
4,686,159	+				+0.2
4,686,160	-				-2.5
4,686,171	-				-0.2
4,686,179	+				-1.4
4,686,179	+				-1.3
4,686,179	+				-3.8
4,686,180	-				-0.8
4,686,180	-				-1.5
4,686,180	-				-0.4
4,686,181	+				-0.4
4,686,181	+				+0.9
4,686,181	+				-0.4
4,686,181	+				-1.4
4,686,181	+				+0.1
4,686,181	+				-0.9
4,686,181	+				-1.5
4,686,181	+				-0.5
4,686,182	-				-1.0
4,686,182	-				-2.0
4,686,182	-				+1.4
4,686,201	+				-0.9
4,686,201	+				+0.6
4,686,270	-				-2.3
4,686,270	-				-0.3
4,686,309	+				-1.8
4,686,309	+				-2.8
4,686,309	+				-1.4
4,686,310	-				+0.7
4,686,312	+				+0.2
4,686,313	-				-0.3
4,686,340	+				+1.8
4,686,341	-				-1.9
4,686,369	+				-0.8
4,686,384	+				-1.3
4,686,384	+				-0.1
4,686,384	+				-0.8
4,686,384	+				-2.0
4,686,384	+				-1.3
4,686,385	-				-1.4
4,686,385	-				+1.2
4,686,385	-				-0.9
4,686,385	-				+0.8
4,686,398	+				+0.6
4,686,398	+				-3.0
4,686,399	-				+0.4
4,686,399	-				+0.4
4,686,399	-				+0.5
4,686,404	+				-0.0
4,686,404	+				-1.0
4,686,405	-				-1.7
4,686,416	+				-0.9
4,686,417	-				-2.6
4,686,421	+				-3.1
4,686,433	+				-1.3
4,686,438	+				+1.6
4,686,438	+				+0.4
4,686,438	+				-2.4
4,686,438	+				-3.5
4,686,438	+				+0.3
4,686,438	+				-1.4
4,686,439	-				-1.9
4,686,439	-				+1.1
4,686,439	-				+1.0
4,686,439	-				-0.0
4,686,439	-				-0.8
4,686,439	-				-0.8
4,686,443	+				+0.2
4,686,444	-				-2.8
4,686,455	+				-0.3
4,686,455	+				-0.3
4,686,456	-				-1.8
4,686,456	-				+1.7
4,686,475	+				-2.6
4,686,475	+				-0.3
4,686,490	+				+1.6
4,686,490	+				-0.9
4,686,490	+				-0.8
4,686,491	-				-2.1
4,686,493	+				-1.3
4,686,494	-				-0.5
4,686,496	+				-0.3
4,686,496	+				+0.1
4,686,497	-				-3.4
4,686,524	+				-0.8
4,686,524	+				-2.6
4,686,524	+				-1.9
4,686,524	+				-1.8
4,686,528	+				+1.4
4,686,528	+				-1.0
4,686,528	+				-1.3
4,686,529	-				-1.4
4,686,529	-				-2.4
4,686,529	-				-3.3
4,686,556	+				-1.4
4,686,556	+				+0.1
4,686,557	-				-2.6
4,686,560	+				+0.7
4,686,560	+				-0.3
4,686,560	+				-0.0
4,686,560	+				+2.0
4,686,560	+				-1.3
4,686,560	+				-0.4
4,686,561	-				-0.5
4,686,561	-				-1.3
4,686,561	-				-1.6
4,686,564	+				+0.1
4,686,565	-				-1.8
4,686,575	+				-2.4
4,686,576	-				-0.2
4,686,576	-				-0.0
4,686,637	+		DDA3937_RS20600	0.13	-1.0
4,686,637	+		DDA3937_RS20600	0.13	-0.8
4,686,662	+		DDA3937_RS20600	0.15	-0.6
4,686,678	+		DDA3937_RS20600	0.16	+0.7
4,686,679	-		DDA3937_RS20600	0.16	-3.0
4,686,697	-		DDA3937_RS20600	0.17	+2.3
4,686,697	-		DDA3937_RS20600	0.17	-1.0
4,686,697	-		DDA3937_RS20600	0.17	-0.3
4,686,734	-		DDA3937_RS20600	0.20	-1.3
4,686,779	-		DDA3937_RS20600	0.24	-0.2
4,686,779	-		DDA3937_RS20600	0.24	-3.3
4,686,780	+		DDA3937_RS20600	0.24	+0.2
4,686,780	+		DDA3937_RS20600	0.24	-2.4
4,686,780	+		DDA3937_RS20600	0.24	+0.8
4,686,780	+		DDA3937_RS20600	0.24	-1.8
4,686,796	+		DDA3937_RS20600	0.25	-1.9
4,686,796	+		DDA3937_RS20600	0.25	-0.3
4,686,797	-		DDA3937_RS20600	0.25	-0.6
4,686,825	+		DDA3937_RS20600	0.27	-1.9
4,686,825	+		DDA3937_RS20600	0.27	-1.2
4,686,854	+		DDA3937_RS20600	0.29	-2.4
4,686,854	+		DDA3937_RS20600	0.29	-0.6
4,686,854	+		DDA3937_RS20600	0.29	-1.3
4,686,854	+		DDA3937_RS20600	0.29	+0.3
4,686,855	-		DDA3937_RS20600	0.29	+0.6
4,686,855	-		DDA3937_RS20600	0.29	-1.0
4,686,855	-		DDA3937_RS20600	0.29	+1.0
4,686,860	-		DDA3937_RS20600	0.30	+0.6
4,686,860	-		DDA3937_RS20600	0.30	-0.8
4,686,860	-		DDA3937_RS20600	0.30	-1.8
4,686,860	-		DDA3937_RS20600	0.30	-0.2
4,686,874	+		DDA3937_RS20600	0.31	-3.3
4,686,874	+		DDA3937_RS20600	0.31	+1.6
4,686,875	-		DDA3937_RS20600	0.31	-0.6
4,686,875	-		DDA3937_RS20600	0.31	-2.7
4,686,906	-		DDA3937_RS20600	0.33	-3.0
4,686,938	-		DDA3937_RS20600	0.36	-3.0
4,686,941	-		DDA3937_RS20600	0.36	+0.7
4,686,941	-		DDA3937_RS20600	0.36	+0.6
4,687,022	-		DDA3937_RS20600	0.42	-0.3
4,687,047	+		DDA3937_RS20600	0.44	-1.4
4,687,047	+		DDA3937_RS20600	0.44	-2.6
4,687,047	+		DDA3937_RS20600	0.44	-1.2
4,687,047	+		DDA3937_RS20600	0.44	-1.4
4,687,047	+		DDA3937_RS20600	0.44	-0.0
4,687,048	-		DDA3937_RS20600	0.44	-3.6
4,687,048	-		DDA3937_RS20600	0.44	-0.3
4,687,048	-		DDA3937_RS20600	0.44	-1.9
4,687,088	-		DDA3937_RS20600	0.47	-0.5
4,687,119	+		DDA3937_RS20600	0.49	-0.4
4,687,119	+		DDA3937_RS20600	0.49	+0.5