Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS20320 and DDA3937_RS20325 overlap by 4 nucleotides DDA3937_RS20325 and DDA3937_RS20330 are separated by 13 nucleotides DDA3937_RS20330 and DDA3937_RS20335 are separated by 134 nucleotides
DDA3937_RS20320: DDA3937_RS20320 - ubiquinone biosynthesis regulatory protein kinase UbiB, at 4,626,157 to 4,627,794
_RS20320
DDA3937_RS20325: DDA3937_RS20325 - SCP2 domain-containing protein, at 4,627,791 to 4,628,399
_RS20325
DDA3937_RS20330: DDA3937_RS20330 - bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE, at 4,628,413 to 4,629,168
_RS20330
DDA3937_RS20335: DDA3937_RS20335 - DNA recombination protein RmuC, at 4,629,303 to 4,630,835
_RS20335
Position (kb) 4628
4629
4630 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4629.241 kb on - strand at 4629.241 kb on - strand at 4629.241 kb on - strand at 4629.241 kb on - strand at 4629.307 kb on - strand at 4629.391 kb on + strand at 4629.392 kb on - strand at 4629.392 kb on - strand at 4629.437 kb on + strand at 4629.438 kb on - strand at 4629.539 kb on + strand, within DDA3937_RS20335 at 4629.595 kb on + strand, within DDA3937_RS20335 at 4629.595 kb on + strand, within DDA3937_RS20335 at 4629.595 kb on + strand, within DDA3937_RS20335 at 4629.596 kb on - strand, within DDA3937_RS20335 at 4629.650 kb on - strand, within DDA3937_RS20335 at 4629.682 kb on - strand, within DDA3937_RS20335 at 4629.710 kb on + strand, within DDA3937_RS20335 at 4629.710 kb on + strand, within DDA3937_RS20335 at 4629.710 kb on + strand, within DDA3937_RS20335 at 4629.710 kb on + strand, within DDA3937_RS20335 at 4629.710 kb on + strand, within DDA3937_RS20335 at 4629.710 kb on + strand, within DDA3937_RS20335 at 4629.711 kb on - strand, within DDA3937_RS20335 at 4629.711 kb on - strand, within DDA3937_RS20335 at 4629.711 kb on - strand, within DDA3937_RS20335 at 4629.711 kb on - strand, within DDA3937_RS20335 at 4629.711 kb on - strand, within DDA3937_RS20335 at 4629.711 kb on - strand, within DDA3937_RS20335 at 4629.711 kb on - strand, within DDA3937_RS20335 at 4629.713 kb on + strand, within DDA3937_RS20335 at 4629.713 kb on + strand, within DDA3937_RS20335 at 4629.713 kb on + strand, within DDA3937_RS20335 at 4629.713 kb on + strand, within DDA3937_RS20335 at 4629.713 kb on + strand, within DDA3937_RS20335 at 4629.714 kb on - strand, within DDA3937_RS20335 at 4629.714 kb on - strand, within DDA3937_RS20335 at 4629.714 kb on - strand, within DDA3937_RS20335 at 4629.714 kb on - strand, within DDA3937_RS20335 at 4629.714 kb on - strand, within DDA3937_RS20335 at 4629.714 kb on - strand, within DDA3937_RS20335 at 4629.802 kb on + strand, within DDA3937_RS20335 at 4629.802 kb on + strand, within DDA3937_RS20335 at 4629.802 kb on + strand, within DDA3937_RS20335 at 4629.802 kb on + strand, within DDA3937_RS20335 at 4629.803 kb on - strand, within DDA3937_RS20335 at 4629.803 kb on - strand, within DDA3937_RS20335 at 4629.803 kb on - strand, within DDA3937_RS20335 at 4629.940 kb on + strand, within DDA3937_RS20335 at 4629.968 kb on + strand, within DDA3937_RS20335 at 4629.968 kb on + strand, within DDA3937_RS20335 at 4630.057 kb on + strand, within DDA3937_RS20335 at 4630.057 kb on + strand, within DDA3937_RS20335 at 4630.057 kb on + strand at 4630.058 kb on - strand, within DDA3937_RS20335 at 4630.058 kb on - strand, within DDA3937_RS20335 at 4630.058 kb on - strand, within DDA3937_RS20335 at 4630.058 kb on - strand, within DDA3937_RS20335 at 4630.058 kb on - strand, within DDA3937_RS20335
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 4,629,241 - -2.8 4,629,241 - +0.7 4,629,241 - +1.2 4,629,241 - +2.1 4,629,307 - +1.1 4,629,391 + +0.5 4,629,392 - +2.2 4,629,392 - -1.0 4,629,437 + -0.1 4,629,438 - +0.6 4,629,539 + DDA3937_RS20335 0.15 +0.7 4,629,595 + DDA3937_RS20335 0.19 -0.1 4,629,595 + DDA3937_RS20335 0.19 -2.9 4,629,595 + DDA3937_RS20335 0.19 -1.2 4,629,596 - DDA3937_RS20335 0.19 +0.8 4,629,650 - DDA3937_RS20335 0.23 -1.6 4,629,682 - DDA3937_RS20335 0.25 -0.9 4,629,710 + DDA3937_RS20335 0.27 +0.2 4,629,710 + DDA3937_RS20335 0.27 -0.9 4,629,710 + DDA3937_RS20335 0.27 -0.7 4,629,710 + DDA3937_RS20335 0.27 -0.3 4,629,710 + DDA3937_RS20335 0.27 +1.3 4,629,710 + DDA3937_RS20335 0.27 -1.7 4,629,711 - DDA3937_RS20335 0.27 -1.7 4,629,711 - DDA3937_RS20335 0.27 +0.0 4,629,711 - DDA3937_RS20335 0.27 -0.4 4,629,711 - DDA3937_RS20335 0.27 +0.1 4,629,711 - DDA3937_RS20335 0.27 +2.9 4,629,711 - DDA3937_RS20335 0.27 -0.5 4,629,711 - DDA3937_RS20335 0.27 +1.1 4,629,713 + DDA3937_RS20335 0.27 -0.3 4,629,713 + DDA3937_RS20335 0.27 -2.1 4,629,713 + DDA3937_RS20335 0.27 -3.4 4,629,713 + DDA3937_RS20335 0.27 -1.3 4,629,713 + DDA3937_RS20335 0.27 +1.3 4,629,714 - DDA3937_RS20335 0.27 -1.6 4,629,714 - DDA3937_RS20335 0.27 -3.3 4,629,714 - DDA3937_RS20335 0.27 -2.5 4,629,714 - DDA3937_RS20335 0.27 +0.5 4,629,714 - DDA3937_RS20335 0.27 +0.2 4,629,714 - DDA3937_RS20335 0.27 -1.0 4,629,802 + DDA3937_RS20335 0.33 -0.3 4,629,802 + DDA3937_RS20335 0.33 -2.0 4,629,802 + DDA3937_RS20335 0.33 +3.3 4,629,802 + DDA3937_RS20335 0.33 -1.6 4,629,803 - DDA3937_RS20335 0.33 -0.0 4,629,803 - DDA3937_RS20335 0.33 -0.2 4,629,803 - DDA3937_RS20335 0.33 -1.9 4,629,940 + DDA3937_RS20335 0.42 -1.7 4,629,968 + DDA3937_RS20335 0.43 -0.2 4,629,968 + DDA3937_RS20335 0.43 -1.4 4,630,057 + DDA3937_RS20335 0.49 -2.6 4,630,057 + DDA3937_RS20335 0.49 -1.0 4,630,057 + -0.0 4,630,058 - DDA3937_RS20335 0.49 -1.9 4,630,058 - DDA3937_RS20335 0.49 -1.0 4,630,058 - DDA3937_RS20335 0.49 +0.9 4,630,058 - DDA3937_RS20335 0.49 -0.1 4,630,058 - DDA3937_RS20335 0.49 +0.8
Or see this region's nucleotide sequence